464 Commits

Author SHA1 Message Date
Hyunsu Cho
ea6b117a57 [jvm-packages] [CI] Publish XGBoost4J JARs with Scala 2.11 and 2.12 2020-04-15 08:39:36 -07:00
Hyunsu Cho
40b4a45770 [CI] Deploy SNAPSHOT JARs to S3 bucket 2020-04-14 14:52:32 -07:00
Jiaming Yuan
58ebbab979
Define lazy isinstance for Python compat. (#5364) (#5369)
* Avoid importing datatable.
* Fix #5363.
2020-02-26 20:39:38 +08:00
Jiaming Yuan
2bc5d8d449
Restore loading model from buffer. (#5360) (#5366) 2020-02-26 14:23:10 +08:00
Philip Hyunsu Cho
7d178cbd25 Fix a small typo in sklearn.py that broke multiple eval metrics (#5341) 2020-02-22 19:04:48 +08:00
Hyunsu Cho
fcb2efbadd Fix a unit test that mistook MINOR ver for PATCH ver 2020-02-21 07:11:59 +00:00
Philip Hyunsu Cho
bf1b2cbfa2
Remove f-string, since it's not supported by Python 3.5 (#5330)
* Remove f-string, since it's not supported by Python 3.5

* Add Python 3.5 to CI, to ensure compatibility

* Remove duplicated matplotlib

* Show deprecation notice for Python 3.5

* Fix lint

* Fix lint
2020-02-20 22:47:05 -08:00
Jiaming Yuan
088c43d666 Fix changing locale. (#5314)
* Fix changing locale.

* Don't use locale guard.

As number parsing is implemented in house, we don't need locale.

* Update doc.
2020-02-17 13:01:48 +08:00
Jiaming Yuan
213f4fa45a
Fix loading old logit model, helper for converting old pickle. (#5281)
* Fix loading old logit model.
* Add a helper script for converting old pickle file.
* Add version as a model parameter.
* Remove the size check in R test to relax the size constraint.
* Add missing R doc for passing linting. Run devtools.
* Cleanup old model IO logic.
* Test compatibility on CI.
* Make the argument as required.
2020-02-13 15:28:13 +08:00
Jiaming Yuan
eeb67c3d52 Avoid dask test fixtures. (#5270)
* Fix Travis OSX timeout.

* Fix classifier.
2020-02-03 22:57:36 -08:00
Jiaming Yuan
ed37fdb9c9 Export JSON config in get_params. (#5256) 2020-02-03 06:16:03 +00:00
Jiaming Yuan
7f542d2198
Test model compatibility. (#5248)
* Add model compability tests.

* Typo.
2020-01-31 02:46:13 -08:00
Jiaming Yuan
fe8d72b50b
Cleanup warnings. (#5247)
From clang-tidy-9 and gcc-7: Invalid case style, narrowing definition, wrong
initialization order, unused variables.
2020-01-31 14:52:15 +08:00
Jiaming Yuan
472ded549d
Save Scikit-Learn attributes into learner attributes. (#5245)
* Remove the recommendation for pickle.

* Save skl attributes in booster.attr

* Test loading scikit-learn model with native booster.
2020-01-30 16:00:18 +08:00
Egor Smirnov
c67163250e
Optimized BuildHist function (#5156) 2020-01-29 23:32:57 -08:00
Philip Hyunsu Cho
4240daed4e
Make pip install xgboost*.tar.gz work by fixing build-python.sh (#5241)
* Make pip install xgboost*.tar.gz work by fixing build-python.sh

* Simplify install doc

* Add test

* Install Miniconda for Linux target too

* Build XGBoost only once in sdist

* Try importing xgboost after installation

* Don't set PYTHONPATH env var for sdist test
2020-01-28 23:18:23 -08:00
Jiaming Yuan
ef19480eda
Add dart to JSON schema. (#5218)
* Add dart to JSON schema.

* Use spaces instead of tab.
2020-01-28 13:29:09 +08:00
Rory Mitchell
1b3947d929
Make some GPU tests deterministic (#5229) 2020-01-26 11:53:07 +13:00
Jiaming Yuan
3eb1279bbf
Config for linear updaters. (#5222) 2020-01-25 11:26:46 +08:00
Jiaming Yuan
40680368cf
Add constraint parameters to Scikit-Learn interface. (#5227)
* Add document for constraints.

* Fix a format error in doc for objective function.
2020-01-25 11:12:02 +08:00
Philip Hyunsu Cho
44469a0ca9
Extensible binary serialization format for DMatrix::MetaInfo (#5187)
* Turn xgboost::DataType into C++11 enum class

* New binary serialization format for DMatrix::MetaInfo

* Fix clang-tidy

* Fix c++ test

* Implement new format proposal

* Move helper functions to anonymous namespace; remove unneeded field

* Fix lint

* Add shape.

* Keep only roundtrip test.

* Fix test.

* various fixes

* Update data.cc

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-01-23 11:33:17 -08:00
OrdoAbChao
b4f952bd22 [Breaking] Remove Scikit-Learn default parameters (#5130)
* Simplify Scikit-Learn parameter management.

* Copy base class for removing duplicated parameter signatures.
* Set all parameters to None.
* Handle None in set_param.
* Extract the doc.

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-01-23 20:25:20 +08:00
Rory Mitchell
aa9a68010b
uint not supported in cudf (#5225) 2020-01-23 16:59:18 +13:00
Jiaming Yuan
1891cc766d
Fix metainfo from DataFrame. (#5216)
* Fix metainfo from DataFrame.

* Unify helper functions for data and meta.
2020-01-22 16:29:44 +08:00
Rory Mitchell
9c56480c61
Support dmatrix construction from cupy array (#5206) 2020-01-22 13:15:27 +13:00
Philip Hyunsu Cho
0184f2e9f7
Explicitly use UTF-8 codepage when using MSVC (#5197)
* Explicitly use UTF-8 codepage when using MSVC

* Fix build with CUDA enabled
2020-01-14 13:30:34 -08:00
Rory Mitchell
a73e25e15f
Implement slice via adapters (#5198) 2020-01-14 12:55:41 +13:00
Kodi Arfer
f100b8d878 [Breaking] Don't drop trees during DART prediction by default (#5115)
* Simplify DropTrees calling logic

* Add `training` parameter for prediction method.

* [Breaking]: Add `training` to C API.

* Change for R and Python custom objective.

* Correct comment.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-01-13 21:48:30 +08:00
Jiaming Yuan
7b65698187
Enforce correct data shape. (#5191)
* Fix syncing DMatrix columns.
* notes for tree method.
* Enable feature validation for all interfaces except for jvm.
* Better tests for boosting from predictions.
* Disable validation on JVM.
2020-01-13 15:48:17 +08:00
Rory Mitchell
8cbcc53ccb
Remove old cudf constructor code (#5194) 2020-01-10 16:35:23 +13:00
Rory Mitchell
87ebfc1315
Implement cudf construction with adapters. (#5189) 2020-01-09 20:23:06 +13:00
Jiaming Yuan
ee287808fb
Lazy initialization of device vector. (#5173)
* Lazy initialization of device vector.

* Fix #5162.

* Disable copy constructor of HostDeviceVector.  Prevents implicit copying.

* Fix CPU build.

* Bring back move assignment operator.
2020-01-07 11:23:05 +08:00
Jiaming Yuan
ebc86a3afa
Disable parameter validation for Scikit-Learn interface. (#5167)
* Disable parameter validation for now.

Scikit-Learn passes all parameters down to XGBoost, whether they are used or
not.

* Add option `validate_parameters`.
2020-01-07 11:17:31 +08:00
Egor Smirnov
7b17e76c5b Optimized EvaluateSplut function (#5138)
* Add block based threading utilities.
2019-12-31 18:18:42 +08:00
Jiaming Yuan
04db125699
Quick fix for memory leak in CPU Hist. (#5153)
Closes https://github.com/dmlc/xgboost/issues/3579 .

* Don't use map.
2019-12-31 14:05:53 +08:00
K.O
018df6004e Fix feature_name crated from int64index dataframe. (#5081) 2019-12-30 12:26:22 +08:00
Jiaming Yuan
6848d0426f
Clean up Python 2 compatibility code. (#5161) 2019-12-27 18:34:53 +08:00
Jiaming Yuan
61286c6e8f
Fix wrapping GPU ID and prevent data copying. (#5160)
* Removed some data copying.

* Make sure gpu_id is valid before any configuration is carried out.
2019-12-27 16:51:08 +08:00
sriramch
ee81ba8e1f implementation of map ranking algorithm on gpu (#5129)
* - implementation of map ranking algorithm
  - also effected necessary suggestions mentioned in the earlier ranking pr's
  - made some performance improvements to the ndcg algo as well
2019-12-27 12:05:37 +13:00
Philip Hyunsu Cho
9b0af6e882 Enable OpenMP with Apple Clang (Mac default compiler) (#5146)
* Add OpenMP as CMake target

* Require CMake 3.12, to allow linking OpenMP target to objxgboost

* Specify OpenMP compiler flag for CUDA host compiler

* Require CMake 3.16+ if the OS is Mac OSX

* Use AppleClang in Mac tests.

* Update dmlc-core
2019-12-26 16:53:12 +08:00
Jiaming Yuan
f3d7877802
Parameter validation (#5157)
* Unused code.

* Split up old colmaker parameters from train param.

* Fix dart.

* Better name.
2019-12-26 11:59:05 +08:00
Jiaming Yuan
ced3660f60
Tests for empty dmatrix. (#5159) 2019-12-26 11:51:54 +08:00
Jiaming Yuan
298ebe68ac
[Breaking] Remove learning_rates in Python. (#5155)
* Remove `learning_rates`.

It's been deprecated since we have callback.

* Set `before_iteration` of `reset_learning_rate` to False to preserve 
  the initial learning rate, and comply to the term "reset".

Closes #4709.

* Tests for various `tree_method`.
2019-12-24 14:25:48 +08:00
Jiaming Yuan
0202e04a8e
Add base margin to sklearn interface. (#5151) 2019-12-24 09:43:41 +08:00
Jiaming Yuan
1d0ca49761
Example JSON model parser and Schema. (#5137) 2019-12-23 19:47:35 +08:00
Jiaming Yuan
c8bdb652c4
Add check for length of weights. (#4872) 2019-12-21 11:30:58 +08:00
Rory Mitchell
3d04a8cc97
Use dynamic types for array interface columns instead of templates (#5108) 2019-12-21 16:08:10 +13:00
Jiaming Yuan
b915788708
Remove benchmark code in GPU test. (#5141)
* Update Jenkins script.
2019-12-21 11:00:21 +08:00
Philip Hyunsu Cho
74f545bde3 [CI] Repair download URL for Maven 3.6.1 (#5139) 2019-12-20 10:07:40 +08:00
Jiaming Yuan
27b3646d29
Tests and documents for new JSON routines. (#5120) 2019-12-18 08:44:27 +08:00