- Reduce dependency on dmlc parsers and provide an interface for users to load data by themselves.
- Remove use of threaded iterator and IO queue.
- Remove `page_size`.
- Make sure the number of pages in memory is bounded.
- Make sure the cache can not be violated.
- Provide an interface for internal algorithms to process data asynchronously.
* Categorical prediction with CPU predictor and GPU predict leaf.
* Implement categorical prediction for CPU prediction.
* Implement categorical prediction for GPU predict leaf.
* Refactor the prediction functions to have a unified get next node function.
Co-authored-by: Shvets Kirill <kirill.shvets@intel.com>
* Use normal predictor for dart booster.
* Implement `inplace_predict` for dart.
* Enable `dart` for dask interface now that it's thread-safe.
* categorical data should be working out of box for dart now.
The implementation is not very efficient as it has to pull back the data and
apply weight for each tree, but still a significant improvement over previous
implementation as now we no longer binary search for each sample.
* Fix output prediction shape on dataframe.
* Add a new API function for predicting on `DMatrix`. This function aligns
with rest of the `XGBoosterPredictFrom*` functions on semantic of function
arguments.
* Purge `ntree_limit` from libxgboost, use iteration instead.
* [dask] Use `inplace_predict` by default for dask sklearn models.
* [dask] Run prediction shape inference on worker instead of client.
The breaking change is in the Python sklearn `apply` function, I made it to be
consistent with other prediction functions where `best_iteration` is used by
default.
* Make external memory data partitioning deterministic.
* Change the meaning of `page_size` from bytes to number of rows.
* Design a data pool.
* Note for external memory.
* Enable unity build on Windows CI.
* Force garbage collect on test.
Normal prediction with DMatrix is now thread safe with locks. Added inplace prediction is lock free thread safe.
When data is on device (cupy, cudf), the returned data is also on device.
* Implementation for numpy, csr, cudf and cupy.
* Implementation for dask.
* Remove sync in simple dmatrix.
* Move prediction cache into Learner.
* Clean-ups
- Remove duplicated cache in Learner and GBM.
- Remove ad-hoc fix of invalid cache.
- Remove `PredictFromCache` in predictors.
- Remove prediction cache for linear altogether, as it's only moving the
prediction into training process but doesn't provide any actual overall speed
gain.
- The cache is now unique to Learner, which means the ownership is no longer
shared by any other components.
* Changes
- Add version to prediction cache.
- Use weak ptr to check expired DMatrix.
- Pass shared pointer instead of raw pointer.
* Pass pointer to model parameters.
This PR de-duplicates most of the model parameters except the one in
`tree_model.h`. One difficulty is `base_score` is a model property but can be
changed at runtime by objective function. Hence when performing model IO, we
need to save the one provided by users, instead of the one transformed by
objective. Here we created an immutable version of `LearnerModelParam` that
represents the value of model parameter after configuration.
* Move get transpose into cc.
* Clean up headers in host device vector, remove thrust dependency.
* Move span and host device vector into public.
* Install c++ headers.
* Short notes for c and c++.
Co-Authored-By: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
* Refactor configuration [Part II].
* General changes:
** Remove `Init` methods to avoid ambiguity.
** Remove `Configure(std::map<>)` to avoid redundant copying and prepare for
parameter validation. (`std::vector` is returned from `InitAllowUnknown`).
** Add name to tree updaters for easier debugging.
* Learner changes:
** Make `LearnerImpl` the only source of configuration.
All configurations are stored and carried out by `LearnerImpl::Configure()`.
** Remove booster in C API.
Originally kept for "compatibility reason", but did not state why. So here
we just remove it.
** Add a `metric_names_` field in `LearnerImpl`.
** Remove `LazyInit`. Configuration will always be lazy.
** Run `Configure` before every iteration.
* Predictor changes:
** Allocate both cpu and gpu predictor.
** Remove cpu_predictor from gpu_predictor.
`GBTree` is now used to dispatch the predictor.
** Remove some GPU Predictor tests.
* IO
No IO changes. The binary model format stability is tested by comparing
hashing value of save models between two commits
* Fix external memory for get column batches.
This fixes two bugs:
* Use PushCSC for get column batches.
* Don't remove the created temporary directory before finishing test.
* Check all pages.
* - set the appropriate device before freeing device memory...
- pr #4532 added a global memory tracker/logger to keep track of number of (de)allocations
and peak memory usage on a per device basis.
- this pr adds the appropriate check to make sure that the (de)allocation counts and memory usages
makes sense for the device. since verbosity is typically increased on debug/non-retail builds.
* - pre-create cub allocators and reuse them
- create them once and not resize them dynamically. we need to ensure that these allocators
are created and destroyed exactly once so that the appropriate device id's are set
This is part 1 of refactoring configuration.
* Move tree heuristic configurations.
* Split up declarations and definitions for GBTree.
* Implement UseGPU in gbm.
* Only define `gpu_id` and `n_gpus` in `LearnerTrainParam`
* Pass LearnerTrainParam through XGBoost vid factory method.
* Disable all GPU usage when GPU related parameters are not specified (fixes XGBoost choosing GPU over aggressively).
* Test learner train param io.
* Fix gpu pickling.
* Fix#3342 and h2oai/h2o4gpu#625: Save predictor parameters in model file
This allows pickled models to retain predictor attributes, such as
'predictor' (whether to use CPU or GPU) and 'n_gpu' (number of GPUs
to use). Related: h2oai/h2o4gpu#625Closes#3342.
TODO. Write a test.
* Fix lint
* Do not load GPU predictor into CPU-only XGBoost
* Add a test for pickling GPU predictors
* Make sample data big enough to pass multi GPU test
* Update test_gpu_predictor.cu
* Multi-GPU support in GPUPredictor.
- GPUPredictor is multi-GPU
- removed DeviceMatrix, as it has been made obsolete by using HostDeviceVector in DMatrix
* Replaced pointers with spans in GPUPredictor.
* Added a multi-GPU predictor test.
* Fix multi-gpu test.
* Fix n_rows < n_gpus.
* Reinitialize shards when GPUSet is changed.
* Tests range of data.
* Remove commented code.
* Remove commented code.
* DMatrix refactor 2
* Remove buffered rowset usage where possible
* Transition to c++11 style iterators for row access
* Transition column iterators to C++ 11
* Use sparse page as singular CSR matrix representation
* Simplify dmatrix methods
* Reduce statefullness of batch iterators
* BREAKING CHANGE: Remove prob_buffer_row parameter. Users are instead recommended to sample their dataset as a preprocessing step before using XGBoost.
* Replaced std::vector-based interfaces with HostDeviceVector-based interfaces.
- replacement was performed in the learner, boosters, predictors,
updaters, and objective functions
- only interfaces used in training were replaced;
interfaces like PredictInstance() still use std::vector
- refactoring necessary for replacement of interfaces was also performed,
such as using HostDeviceVector in prediction cache
* HostDeviceVector-based interfaces for custom objective function example plugin.
* Fatal error if GPU algorithm selected without GPU support compiled
* Resolve type conversion warnings
* Fix gpu unit test failure
* Fix compressed iterator edge case
* Fix python unit test failures due to flake8 update on pip
* SHAP values for feature contributions
* Fix commenting error
* New polynomial time SHAP value estimation algorithm
* Update API to support SHAP values
* Fix merge conflicts with updates in master
* Correct submodule hashes
* Fix variable sized stack allocation
* Make lint happy
* Add docs
* Fix typo
* Adjust tolerances
* Remove unneeded def
* Fixed cpp test setup
* Updated R API and cleaned up
* Fixed test typo
