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Author SHA1 Message Date
Ali
b35dd76dca
[R] don't remove CMakeLists in cleanup (#6930) 
currently installing the R-pacakge will leave the repo in dirty state, since
`CmakeLists.txt` is already checked in. This fixes the `cleanup`
script to not delete this file.
 2021-05-03 17:46:15 +08:00
Jiaming Yuan
37ad60fe25
Enforce input data is not object. (#6927) 
* Check for object data type.
* Allow strided arrays with greater underlying buffer size.
 2021-05-02 00:09:01 +08:00
Jiaming Yuan
a1d23f6613
Relax test for decision stump in distributed environment. (#6919) 2021-04-30 09:04:11 +08:00
Jiaming Yuan
45ddc39c1d
Relax shotgun test. (#6918) 2021-04-30 09:03:12 +08:00
Jiaming Yuan
34df1f588b
Reduce Travis environment setup time. (#6912) 
* Remove unused r from travis.
* Don't update homebrew.
* Don't install indirect/unused dependencies like libgit2, wget, openssl.
* Move graphviz installation to conda.
 2021-04-30 09:02:40 +08:00
Jiaming Yuan
b31d37eac5
[CI] Fix custom metric test with empty dataset. (#6917) 2021-04-30 09:00:05 +08:00
Jiaming Yuan
db6285fb55
[CI] Skip external memory gtest on osx. (#6901) 2021-04-30 08:59:33 +08:00
david-cortes
4e1a8b1fe5
Update R handles in-place (#6903) 
* update R handles in-place #fixes 6896

* update test to expect non-null handle

* remove unused variable

* fix failing tests

* solve linter complains
 2021-04-29 12:50:46 -07:00
Philip Hyunsu Cho
5472ef626c
[R] Re-generate Roxygen2 doc (#6915) 2021-04-29 11:55:07 -07:00
James Lamb
20f34d9776
[R-package] Update dependencies from CMake-based installation (#6906) 
* remove stringi
* add Matrix and jsonlite
 2021-04-29 01:32:01 +08:00
Jiaming Yuan
ef473b1f09
Disable pylint error. (#6911) 2021-04-29 01:01:37 +08:00
Jiaming Yuan
8760ec4827
Ensure predict leaf output 1-dim vector where there's only 1 tree. (#6889) 2021-04-23 15:07:48 +08:00
Jiaming Yuan
54afa3ac7a
Relax shotgun test. (#6900) 
It's non-deterministic algorithm, the test is flaky.
 2021-04-23 13:01:44 +08:00
Jiaming Yuan
a2ecbdaa31
Add an API guard to prevent global variables being changed. (#6891) 2021-04-23 10:27:57 +08:00
Jiaming Yuan
896aede340
Reorganize the installation documents. (#6877) 
* Split up installation and building from source.
* Use consistent section titles.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-04-22 04:48:32 +08:00
Jiaming Yuan
74b41637de
Revert "[jvm-packages] Add XGBOOST_RABIT_TRACKER_IP_FOR_TEST to set rabit tracker IP. (#6869)" (#6886) 
This reverts commit 2828da3c4c951baa45d1bb6f85c7b3a6657cd607.
 2021-04-21 11:20:10 -07:00
Kai Fricke
c8cc3eacc9
[docs] Add tutorial for XGBoost-Ray (#6884) 
* Add XGBoost-Ray tutorial

* Add link to modin
 2021-04-22 02:07:13 +08:00
Bobby Wang
2828da3c4c
[jvm-packages] Add XGBOOST_RABIT_TRACKER_IP_FOR_TEST to set rabit tracker IP. (#6869) 
* Add `XGBOOST_RABIT_TRACKER_IP_FOR_TEST` to set rabit tracker IP

* change spark and rabit tracker IP to 127.0.0.1on GitHub Action.

Co-authored-by: fis <jm.yuan@outlook.com>
 2021-04-22 02:00:22 +08:00
Jiaming Yuan
233bdf105f
Remove setDaemon in tracker. (#6872) 2021-04-22 01:57:13 +08:00
Jiaming Yuan
71b938f608
1.4.1 release news. (#6876) 2021-04-22 01:55:57 +08:00
Jiaming Yuan
146549260a
Bump version to 1.5.0 snapshot in master. (#6875) 2021-04-22 01:53:44 +08:00
Jiaming Yuan
bec2b4f094
Revert "Use CPU input for test_boost_from_prediction. (#6818)" (#6858) 
This reverts commit 74f3a2f4b5c2654af90d1477fd543b5d97280fbe.
 2021-04-20 14:54:02 +08:00
Bobby Wang
2c684ffd32
[jvm-packages] fix "key not found: train" issue (#6842) 
* [jvm-packages] fix "key not found: train" issue

* fix bug
 2021-04-18 23:28:39 -07:00
Jiaming Yuan
556a83022d
Implement unified update prediction cache for (gpu_)hist. (#6860) 
* Implement utilites for linalg.
* Unify the update prediction cache functions.
* Implement update prediction cache for multi-class gpu hist.
 2021-04-17 00:29:34 +08:00
Jiaming Yuan
1b26a2a561
Copy output data for argsort. (#6866) 
Fix GPU AUC.
 2021-04-16 21:05:01 +08:00
Jiaming Yuan
a5d7094a45
Update documents. (#6856) 
* Add early stopping section to prediction doc.
* Remove best_ntree_limit.
* Better doxygen output.
 2021-04-16 12:41:03 +08:00
ReeceGoding
d31a57cf5f
Removed typo in callbacks.R (#6863) 
Changed "TURE" to "TRUE".
 2021-04-16 05:43:22 +08:00
Jiaming Yuan
bccb7e87d1
Update dmlc-core. (#6862) 
* Install pandoc, pandoc-citeproc on CI.
 2021-04-16 00:14:17 +08:00
ReeceGoding
2e8c101b4a
Removed magrittr dependency in callbacks.R (#6855) 2021-04-15 18:45:17 +08:00
Philip Hyunsu Cho
4224c08cac
Add demo for using AFT survival with Dask (#6853) 2021-04-13 16:18:33 -07:00
Philip Hyunsu Cho
878b990fcd
[CI] Upload Doxygen to correct destination (#6854) 2021-04-13 16:18:13 -07:00
Jiaming Yuan
dee5ef2dfd
Typehint for Sklearn. (#6799) 2021-04-14 06:55:21 +08:00
Jiaming Yuan
3d919db0c0
Fix pip release script. [skip ci] (#6845) 2021-04-14 06:46:02 +08:00
Jiaming Yuan
b9a4f3336a
1.4 release notes. (#6843) 2021-04-13 08:38:27 +08:00
Philip Hyunsu Cho
ea7a6a0321
[CI] Pack R package tarball with pre-built xgboost.so (with GPU support) (#6827) 
* Add scripts for packaging R package with GPU-enabled libxgboost.so

* [CI] Automatically build R package tarball

* Add comments

* Don't build tarball for pull requests

* Update the installation doc
 2021-04-07 21:15:34 -07:00
Jiaming Yuan
f294c4e023
Use constexpr in dh::CopyIf. (#6828) 2021-04-08 07:37:47 +08:00
Viktor Szathmáry
b65e3c4444
[jvm] reduce scala-compiler, scalatest dependency scopes (#6730) 
* [jvm] reduce scala-compiler, scalatest dependency scopes

* [jvm] workaround for GpuTestSuite scalatest dependency

* scalatest scope tweak
 2021-04-07 15:22:08 -07:00
Jiaming Yuan
7bcc8b3e5c
Use batched copy if. (#6826) 2021-04-06 10:34:04 +08:00
giladmaya
aa0d8f20c1
Support configuring constraints by feature names (#6783) 
Co-authored-by: fis <jm.yuan@outlook.com>
 2021-04-04 06:53:33 +08:00
Jiaming Yuan
7e06c81894
Fix approximated predict contribution. (#6811) 2021-04-03 02:15:03 +08:00
Jiaming Yuan
0cced530ea
[doc] Clarify prediction function. (#6813) 2021-04-03 02:12:04 +08:00
Jiaming Yuan
b1fdb220f4
Remove deprecated n_gpus parameter. (#6821) 2021-04-02 03:02:32 +08:00
Jiaming Yuan
74f3a2f4b5
Use CPU input for test_boost_from_prediction. (#6818) 2021-04-02 00:11:35 +08:00
Jiaming Yuan
47b62480af
More general predict proba. (#6817) 
* Use `output_margin` for `softmax`.
* Add test for dask binary cls.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2021-04-01 19:52:12 +08:00
Jiaming Yuan
a5c852660b
Update document for sklearn model IO. (#6809) 
* Update the use of JSON.
* Remove unnecessary type cast.
 2021-04-01 15:52:36 +08:00
Jiaming Yuan
905fdd3e08
Fix typos in AUC. (#6795) 2021-03-31 16:35:42 +08:00
Jiaming Yuan
ca998df912
Clarify the behavior of use_rmm. (#6808) 
* Clarify the `use_rmm` flag in document and demo.
 2021-03-31 15:43:11 +08:00
Jiaming Yuan
3039dd194b
Don't estimate sketch batch size when rmm is used. (#6807) 2021-03-31 15:29:56 +08:00
Jiaming Yuan
10ae0f9511
Fix doc for apply method. (#6796) 2021-03-31 15:28:31 +08:00
Jiaming Yuan
138fe8516a
Remove unnecessary calls to iota. (#6797) 2021-03-31 15:27:23 +08:00