* [R] fix predict contributions for data with no colnames
* [R] add a render parameter for xgb.plot.multi.trees; fixes#2628
* [R] update Rd's
* [R] remove unnecessary dep-package from R cmake install
* silence type warnings; readability
* [R] silence complaint about incomplete line at the end
* [R] initial version of xgb.plot.shap()
* [R] more work on xgb.plot.shap
* [R] enforce black font in xgb.plot.tree; fixes#2640
* [R] if feature names are available, check in predict that they are the same; fixes#2857
* [R] cran check and lint fixes
* remove tabs
* [R] add references; a test for plot.shap
* Fix#2905
* Fix gpu_exact test failures
* Fix bug in GPU prediction where multiple calls to batch prediction can produce incorrect results
* Fix GPU documentation formatting
* Some minor changes to the code style
Some minor changes to the code style in file basic_walkthrough.py
* coding style changes
* coding style changes arrcording PEP8
* Update basic_walkthrough.py
* Fix minor typo
* Minor edits to coding style
Minor edits to coding style following the proposals of PEP8.
* [jvm-packages] Exposed train-time evaluation metrics
They are accessible via 'XGBoostModel.summary'. The summary is not
serialized with the model and is only available after the training.
* Addressed review comments
* Extracted model-related tests into 'XGBoostModelSuite'
* Added tests for copying the 'XGBoostModel'
* [jvm-packages] Fixed a subtle bug in train/test split
Iterator.partition (naturally) assumes that the predicate is deterministic
but this is not the case for
r.nextDouble() <= trainTestRatio
therefore sometimes the DMatrix(...) call got a NoSuchElementException
and crashed the JVM due to lack of exception handling in
XGBoost4jCallbackDataIterNext.
* Make sure train/test objectives are different
I found the installation of the Python XGBoost package to be problematic as the documentation around compiler requirements was unclear, as discussed in #1501. I decided that I would improve the README.
- Implement colsampling, subsampling for gpu_hist_experimental
- Optimised multi-GPU implementation for gpu_hist_experimental
- Make nccl optional
- Add Volta architecture flag
- Optimise RegLossObj
- Add timing utilities for debug verbose mode
- Bump required cuda version to 8.0
In the refactor to add base margins, #2532, all of the labels were lost
when creating the dmatrix. This became obvious as metrics like ndcg
always returned 1.0 regardless of the results.
Change-Id: I88be047e1c108afba4784bd3d892bfc9edeabe55
Training a model with the experimental rank:ndcg objective incorrectly
returns a Classification model. Adjust the classification check to
not recognize rank:* objectives as classification.
While writing tests for isClassificationTask also turned up that
obj_type -> regression was incorrectly identified as a classification
task so the function was slightly adjusted to pass the new tests.
* Some minor changes to the code style
Some minor changes to the code style in file basic_walkthrough.py
* coding style changes
* coding style changes arrcording PEP8
* Update basic_walkthrough.py
* Fatal error if GPU algorithm selected without GPU support compiled
* Resolve type conversion warnings
* Fix gpu unit test failure
* Fix compressed iterator edge case
* Fix python unit test failures due to flake8 update on pip
Problem:
Fast histogram updater crashes whenever subsampling picks zero rows
Diagnosis:
Row set data structure uses "nullptr" internally to indicate a non-existent
row set. Since you cannot take the address of the first element of an empty
vector, a valid row set ends up getting "nullptr" as well.
Fix:
Use an arbitrary value (not equal to "nullptr") to bypass nullptr check.
* Only set OpenMP_CXX_FLAGS when OpenMP is found
I found this trying to get the Mac build working without OpenMP. Tips in
issue #2596 helped to point in the right direction.
* Revise check
* Trigger codecov
* Add SparkParallelismTracker to prevent job from hanging
* Code review comments
* Code Review Comments
* Fix unit tests
* Changes and unit test to catch the corner case.
* Update documentations
* Small improvements
* cancalAllJobs is problematic with scalatest. Remove it
* Code Review Comments
* Check number of executor cores beforehand, and throw exeception if any core is lost.
* Address CR Comments
* Add missing class
* Fix flaky unit test
* Address CR comments
* Remove redundant param for TaskFailedListener
* SHAP values for feature contributions
* Fix commenting error
* New polynomial time SHAP value estimation algorithm
* Update API to support SHAP values
* Fix merge conflicts with updates in master
* Correct submodule hashes
* Fix variable sized stack allocation
* Make lint happy
* Add docs
* Fix typo
* Adjust tolerances
* Remove unneeded def
* Fixed cpp test setup
* Updated R API and cleaned up
* Fixed test typo
* coding style update
Current coding style varies(for example: the mixed use of single quote and double quote), and it will be confusing, especially for new users.
This PR will try to follow proposal of PEP8, make the documents more readable.
* minor fix
* Allowed subsampling test from the training data frame/RDD
The implementation requires storing 1 - trainTestRatio points in memory
to make the sampling work.
An alternative approach would be to construct the full DMatrix and then
slice it deterministically into train/test. The peak memory consumption
of such scenario, however, is twice the dataset size.
* Removed duplication from 'XGBoost.train'
Scala callers can (and should) use names to supply a subset of
parameters. Method overloading is not required.
* Reuse XGBoost seed parameter to stabilize train/test splitting
* Added early stopping support to non-distributed XGBoost
Closes#1544
* Added early-stopping to distributed XGBoost
* Moved construction of 'watches' into a separate method
This commit also fixes the handling of 'baseMargin' which previously
was not added to the validation matrix.
* Addressed review comments
* [R] MSVC compatibility
* [GPU] allow seed in BernoulliRng up to size_t and scale to uint32_t
* R package build with cmake and CUDA
* R package CUDA build fixes and cleanups
* always export the R package native initialization routine on windows
* update the install instructions doc
* fix lint
* use static_cast directly to set BernoulliRng seed
* [R] demo for GPU accelerated algorithm
* tidy up the R package cmake stuff
* R pack cmake: installs main dependency packages if needed
* [R] version bump in DESCRIPTION
* update NEWS
* added short missing/sparse values explanations to FAQ
Current version of xgboost.readthedocs.io has a broken search box.
Enabling themes on ReadTheDocs is known to break the search function, as
reported in
[this document](https://github.com/rtfd/readthedocs.org/issues/1487). To get
around the bug, we replace the `searchtools.js` file with our custom version.
