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Author SHA1 Message Date
Hyunsu Cho
3728855ce9 Make RC1 v1.1.0rc1 2020-04-24 13:56:54 -07:00
Philip Hyunsu Cho
ef26bc45bf
Hide C++ symbols in libxgboost.so when building Python wheel (#5590) 
* Hide C++ symbols in libxgboost.so when building Python wheel

* Update Jenkinsfile

* Add test

* Upgrade rabit

* Add setup.py option.

Co-authored-by: fis <jm.yuan@outlook.com>
 2020-04-24 13:32:05 -07:00
Rory Mitchell
660be66207
Avoid rabit calls in learner configuration (#5581) 2020-04-24 14:59:29 +12:00
Philip Hyunsu Cho
92913aaf7f
[CI] Use Vault repository to re-gain access to devtoolset-4 (#5589) 
* [CI] Use Vault repository to re-gain access to devtoolset-4

* Use manylinux2010 tag

* Update Dockerfile.jvm

* Fix rename_whl.py

* Upgrade Pip, to handle manylinux2010 tag

* Update insert_vcomp140.py

* Update test_python.sh
 2020-04-23 18:53:54 -07:00
Philip Hyunsu Cho
e4f5b6c84f
Port R compatibility patches from 1.0.0 release branch (#5577) 
* Don't use memset to set struct when compiling for R

* Support 32-bit Solaris target for R package
 2020-04-21 22:51:18 -07:00
Jiaming Yuan
f27b6f9ba6
Update document. (#5572) 2020-04-22 02:37:37 +08:00
Jiaming Yuan
c355ab65ed
Enable parameter validation for R. (#5569) 
* Enable parameter validation for R.

* Add test.
 2020-04-21 11:19:09 -07:00
Jiaming Yuan
564b22cee5
Restore attributes in complete. (#5573) 2020-04-21 11:06:55 -07:00
Rory Mitchell
a734f52807
Use cudaDeviceGetAttribute instead of cudaGetDeviceProperties (#5570) 2020-04-21 14:58:29 +12:00
Andy Adinets
73142041b9
For histograms, opting into maximum shared memory available per block. (#5491) 2020-04-21 14:56:42 +12:00
Jiaming Yuan
9c1103e06c
[Breaking] Set output margin to True for custom objective. (#5564) 
* Set output margin to True for custom objective in Python and R.

* Add a demo for writing multi-class custom objective function.

* Run tests on selected demos.
 2020-04-20 20:44:12 +08:00
Jiaming Yuan
fcbedcedf8
Fix configuration I load model. (#5562) 2020-04-20 17:25:11 +08:00
Jiaming Yuan
29a4cfe400
Group aware GPU sketching. (#5551) 
* Group aware GPU weighted sketching.

* Distribute group weights to each data point.
* Relax the test.
* Validate input meta info.
* Fix metainfo copy ctor.
 2020-04-20 17:18:52 +08:00
Liang-Chi Hsieh
397d8f0ee7
[jvm-packages] XGBoost Spark should deal with NaN when parsing evaluation output (#5546) 2020-04-19 23:10:30 -07:00
Jiaming Yuan
b809f5d8b8
Don't set seed on CLI interface. (#5563) 2020-04-20 12:17:03 +08:00
Jiaming Yuan
ccd30e4491
Fix non-openmp build. (#5566) 
* Add test to Jenkins.
* Fix threading utils tests.
* Require thread library.
 2020-04-20 12:16:38 +08:00
Rory Mitchell
b2827a80e1
Use non-synchronising scan (#5560) 2020-04-20 15:51:34 +12:00
Rory Mitchell
d6d1035950
gpu_hist performance fixes (#5558) 
* Remove unnecessary cuda API calls

* Fix histogram memory growth
 2020-04-19 12:21:13 +12:00
Jiaming Yuan
e1f22baf8c
Fix slice and get info. (#5552) 2020-04-18 18:00:13 +08:00
Jiaming Yuan
c245eb8755
Fix r interaction constraints (#5543) 
* Unify the parsing code.

* Cleanup.
 2020-04-18 06:53:51 +08:00
Jiaming Yuan
93df871c8c
Assert matching length of evaluation inputs. (#5540) 2020-04-18 06:52:55 +08:00
Jiaming Yuan
c69a19e2b1
Fix skl nan tag. (#5538) 2020-04-18 06:52:17 +08:00
Jiaming Yuan
cfee9fae91
Don't use uint for threads. (#5542) 2020-04-17 09:45:42 +08:00
Jiaming Yuan
bb29ce2818
Add missing aft parameters. [skip ci] (#5553) 2020-04-16 12:08:55 -07:00
ShvetsKS
a2d86b8e4b
Optimizations for RNG in InitData kernel (#5522) 
* optimizations for subsampling in InitData

* optimizations for subsampling in InitData

Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
 2020-04-16 18:24:32 +03:00
Rory Mitchell
e268fb0093
Use thrust functions instead of custom functions (#5544) 2020-04-16 21:41:16 +12:00
Melissa Kohl
6a169cd41a
Fix uninitialized value bug in xgboost callback (#5463) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-04-16 07:50:54 +08:00
Jiaming Yuan
468b1594d3
Fix CLI model IO. (#5535) 
* Add test for comparing Python and CLI training result.
 2020-04-16 07:48:47 +08:00
Philip Hyunsu Cho
0676a19e70
[jvm-packages] [CI] Publish XGBoost4J JARs with Scala 2.11 and 2.12 (#5539) 2020-04-15 09:32:02 -07:00
Philip Hyunsu Cho
ec02f40d42
[CI] Use Ubuntu 18.04 LTS in JVM CI, because 19.04 is EOL (#5537) 2020-04-15 07:32:46 -07:00
Jiaming Yuan
8b04736b81
[dask] dask cudf inplace prediction. (#5512) 
* Add inplace prediction for dask-cudf.

* Remove Dockerfile.release, since it's not used anywhere

* Use Conda exclusively in CUDF and GPU containers

* Improve cupy memory copying.

* Add skip marks to tests.

* Add mgpu-cudf category on the CI to run all distributed tests.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-04-15 18:15:51 +08:00
Rory Mitchell
ca4e05660e
Purge device_helpers.cuh (#5534) 
* Simplifications with caching_device_vector

* Purge device helpers
 2020-04-15 21:51:56 +12:00
Jiaming Yuan
a2f54963b6
Write binary header. (#5532) 2020-04-15 17:47:57 +08:00
Philip Hyunsu Cho
1b1969f20d
[jvm-packages] [CI] Create a Maven repository to host SNAPSHOT JARs (#5533) 2020-04-14 19:33:32 -07:00
Kamil A. Kaczmarek
2809fb8b6f
Add Neptune and Optuna to list of examples (#5528) 2020-04-14 11:00:50 -07:00
Jiaming Yuan
c90119eb67
Update Python doc. [skip ci] (#5517) 
* Update doc for copying booster. [skip ci]

The issue is resolved in  #5312 .

* Add version for new APIs. [skip ci]
 2020-04-14 16:25:20 +08:00
Philip Hyunsu Cho
88b64c8162
Ensure that configured dmlc/build_config.h is picked up by Rabit and XGBoost (#5514) 
* Ensure that configured header (build_config.h) from dmlc-core is picked up by Rabit and XGBoost

* Check which Rabit target is being used

* Use CMake 3.13 in all Jenkins tests

* Upgrade CMake in Travis CI

* Install CMake using Kitware installer

* Remove existing CMake (3.12.4)
 2020-04-11 23:48:28 -07:00
Nicolas Scozzaro
04f69b43e6
fix typo "customized" (#5515) 2020-04-12 14:43:48 +08:00
Liang-Chi Hsieh
449ab79e0c
[CI] Use devtoolset-6 because devtoolset-4 is EOL and no longer available (#5506) 
* Use devtoolset-6.

* [CI] Use devtoolset-6 because devtoolset-4 is EOL and no longer available

* CUDA 9.0 doesn't work with devtoolset-6; use devtoolset-4 for GPU build only

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-04-11 19:49:06 -07:00
Jiaming Yuan
b56c902841
[R] R raw serialization. (#5123) 
* Add bindings for serialization.
* Change `xgb.save.raw' into full serialization instead of simple model.
* Add `xgb.load.raw' for unserialization.
* Run devtools.
 2020-04-11 17:16:54 +08:00
Jiaming Yuan
a3db79df22
Remove makefiles. (#5513) 2020-04-11 13:25:53 +08:00
Rory Mitchell
093e2227e3
Serialise booster after training to reset state (#5484) 
* Serialise booster after training to reset state

* Prevent process_type being set on load

* Check for correct updater sequence
 2020-04-11 16:27:12 +12:00
Jiaming Yuan
4a0c8ef237
Update doc for parameter validation. (#5508) 
* Update doc for parameter validation.

* Fix github rebase.
 2020-04-11 00:43:46 +08:00
Jiaming Yuan
1334aca437
Fix github merge. (#5509) 2020-04-10 22:17:38 +08:00
Jiaming Yuan
866a477319
Unify max nodes. (#5497) 2020-04-10 19:26:35 +08:00
Jiaming Yuan
bd653fad4c
Remove distcol updater. (#5507) 
Closes #5498.
 2020-04-10 12:52:56 +08:00
Jiaming Yuan
7d52c0b8c2
Requires setting leaf stat when expanding tree. (#5501) 
* Fix GPU Hist feature importance.
 2020-04-10 12:27:03 +08:00
Jiaming Yuan
dc2950fd90
Fix checking booster. (#5505) 
* Use `get_params()` instead of `getattr` intrinsic.
 2020-04-10 12:21:21 +08:00
Jiaming Yuan
6671b42dd4
Use ellpack for prediction only when sparsepage doesn't exist. (#5504) 2020-04-10 12:15:46 +08:00
Bobby Wang
ad826e913f
[jvm-packages]add feature size for LabelPoint and DataBatch (#5303) 
* fix type error

* Validate number of features.

* resolve comments

* add feature size for LabelPoint and DataBatch

* pass the feature size to native

* move feature size validating tests into a separate suite

* resolve comments

Co-authored-by: fis <jm.yuan@outlook.com>
 2020-04-07 16:49:52 -07:00