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564 Commits

Author SHA1 Message Date
Jiaming Yuan
306e38ff31
Avoid including c_api.h in header files. (#5782) 2020-06-12 16:24:24 +08:00
Jiaming Yuan
3028fa6b42
Implement weighted sketching for adapter. (#5760) 
* Bounded memory tests.
* Fixed memory estimation.
 2020-06-12 06:20:39 +08:00
James Lamb
c96e1ef283
[python-package] remove unused imports (#5776) 2020-06-11 16:50:27 +08:00
Jiaming Yuan
cacff9232a
Remove column major specialization. (#5755) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-06-05 16:19:14 +08:00
Jiaming Yuan
bd9d57f579
Add helper for generating batches of data. (#5756) 
* Add helper for generating batches of data.

* VC keyword clash.

* Another clash.
 2020-06-05 09:53:56 +08:00
Rory Mitchell
359023c0fa
Speed up python test (#5752) 
* Speed up tests

* Prevent DeviceQuantileDMatrix initialisation with numpy

* Use joblib.memory

* Use RandomState
 2020-06-05 11:39:24 +12:00
ShvetsKS
cd3d14ad0e
Add float32 histogram (#5624) 
* new single_precision_histogram param was added.

Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
Co-authored-by: fis <jm.yuan@outlook.com>
 2020-06-03 11:24:53 +08:00
Jiaming Yuan
e49607af19
Add Python binding for rabit ops. (#5743) 2020-06-02 19:47:23 +08:00
Jiaming Yuan
e533908922
Expose device sketching in header. (#5747) 2020-06-02 13:02:53 +08:00
Jiaming Yuan
9e1b29944e
Fix loading old model. (#5724) 
* Add test.
 2020-05-31 14:55:32 +08:00
Jiaming Yuan
35e2205256
[dask] Return GPU Series when input is from cuDF. (#5710) 
* Refactor predict function.
 2020-05-28 17:51:20 +08:00
Philip Hyunsu Cho
91c646392d
Require Python 3.6+; drop Python 3.5 from CI (#5715) 2020-05-27 16:19:30 -07:00
Philip Hyunsu Cho
e3aa7f1441
Define _CRT_SECURE_NO_WARNINGS to remove unneeded warnings in MSVC (#5434) 2020-05-25 22:46:07 -07:00
Jiaming Yuan
8438c7d0e4
Fix IsDense. (#5702) 2020-05-26 08:24:37 +08:00
Jiaming Yuan
5af8161a1a
Implement Python data handler. (#5689) 
* Define data handlers for DMatrix.
* Throw ValueError in scikit learn interface.
 2020-05-22 11:53:55 +08:00
Andy Adinets
646def51e0
C++14 for xgboost (#5664) 2020-05-21 12:26:40 +12:00
ShvetsKS
dd01e4ba8d
Distributed optimizations for 'hist' method with CPUs (#5557) 
Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
 2020-05-20 06:03:03 +03:00
Jiaming Yuan
7903286961
Remove silent from R demos. (#5675) 
* Remove silent from R demos.

* Vignettes.
 2020-05-19 18:20:46 +08:00
LionOrCatThatIsTheQuestion
83981a9ce3
Pseudo-huber loss metric added (#5647) 
- Add pseudo huber loss objective.
- Add pseudo huber loss metric.

Co-authored-by: Reetz <s02reetz@iavgroup.local>
 2020-05-18 21:08:07 +08:00
Jiaming Yuan
535479e69f
Add JSON schema to model dump. (#5660) 2020-05-15 10:18:43 +08:00
Jiaming Yuan
2c1a439869
Update Python demos with tests. (#5651) 
* Remove GPU memory usage demo.
* Add tests for demos.
* Remove `silent`.
* Remove shebang as it's not portable.
 2020-05-12 12:04:42 +08:00
Oleksandr Kuvshynov
4e64e2ef8e
skip missing lookup if nothing is missing in CPU hist partition kernel. (#5644) 
* [xgboost] skip missing lookup if nothing is missing
 2020-05-12 05:50:08 +03:00
Jiaming Yuan
9ad40901a8
Upgrade to CUDA 10.0 (#5649) (#5652) 
Co-authored-by: fis <jm.yuan@outlook.com>

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-05-11 22:27:36 +08:00
Rory Mitchell
fcf57823b6
Reduce device synchronisation (#5631) 
* Reduce device synchronisation

* Initialise pinned memory
 2020-05-07 21:19:46 +12:00
Jiaming Yuan
21ed1f0c6d
Support 64bit seed. (#5643) 2020-05-07 14:52:38 +08:00
Jiaming Yuan
eaf2a00b5c
Enhance nvtx support. (#5636) 2020-05-06 22:54:24 +08:00
Rory Mitchell
b9649e7b8e
Refactor gpu_hist split evaluation (#5610) 
* Refactor

* Rewrite evaluate splits

* Add more tests
 2020-04-30 08:58:12 +12:00
Jiaming Yuan
c90457f489
Refactor the CLI. (#5574) 
* Enable parameter validation.
* Enable JSON.
* Catch `dmlc::Error`.
* Show help message.
 2020-04-26 10:56:33 +08:00
Jiaming Yuan
7d93932423
Better message when no GPU is found. (#5594) 2020-04-26 10:00:57 +08:00
Philip Hyunsu Cho
a23de1c108
[CI] Grant public read access to Mac OSX wheels (#5602) 2020-04-25 11:51:26 -07:00
Philip Hyunsu Cho
f68155de6c
Fix compilation on Mac OSX High Sierra (10.13) (#5597) 
* Fix compilation on Mac OSX High Sierra

* [CI] Build Mac OSX binary wheel using Travis CI
 2020-04-25 10:53:03 -07:00
Jiaming Yuan
e726dd9902
Set device in device dmatrix. (#5596) 2020-04-25 13:42:53 +08:00
Philip Hyunsu Cho
ef26bc45bf
Hide C++ symbols in libxgboost.so when building Python wheel (#5590) 
* Hide C++ symbols in libxgboost.so when building Python wheel

* Update Jenkinsfile

* Add test

* Upgrade rabit

* Add setup.py option.

Co-authored-by: fis <jm.yuan@outlook.com>
 2020-04-24 13:32:05 -07:00
Rory Mitchell
660be66207
Avoid rabit calls in learner configuration (#5581) 2020-04-24 14:59:29 +12:00
Philip Hyunsu Cho
92913aaf7f
[CI] Use Vault repository to re-gain access to devtoolset-4 (#5589) 
* [CI] Use Vault repository to re-gain access to devtoolset-4

* Use manylinux2010 tag

* Update Dockerfile.jvm

* Fix rename_whl.py

* Upgrade Pip, to handle manylinux2010 tag

* Update insert_vcomp140.py

* Update test_python.sh
 2020-04-23 18:53:54 -07:00
Andy Adinets
73142041b9
For histograms, opting into maximum shared memory available per block. (#5491) 2020-04-21 14:56:42 +12:00
Jiaming Yuan
9c1103e06c
[Breaking] Set output margin to True for custom objective. (#5564) 
* Set output margin to True for custom objective in Python and R.

* Add a demo for writing multi-class custom objective function.

* Run tests on selected demos.
 2020-04-20 20:44:12 +08:00
Jiaming Yuan
29a4cfe400
Group aware GPU sketching. (#5551) 
* Group aware GPU weighted sketching.

* Distribute group weights to each data point.
* Relax the test.
* Validate input meta info.
* Fix metainfo copy ctor.
 2020-04-20 17:18:52 +08:00
Jiaming Yuan
b809f5d8b8
Don't set seed on CLI interface. (#5563) 2020-04-20 12:17:03 +08:00
Jiaming Yuan
ccd30e4491
Fix non-openmp build. (#5566) 
* Add test to Jenkins.
* Fix threading utils tests.
* Require thread library.
 2020-04-20 12:16:38 +08:00
Rory Mitchell
d6d1035950
gpu_hist performance fixes (#5558) 
* Remove unnecessary cuda API calls

* Fix histogram memory growth
 2020-04-19 12:21:13 +12:00
Jiaming Yuan
e1f22baf8c
Fix slice and get info. (#5552) 2020-04-18 18:00:13 +08:00
Jiaming Yuan
c245eb8755
Fix r interaction constraints (#5543) 
* Unify the parsing code.

* Cleanup.
 2020-04-18 06:53:51 +08:00
Jiaming Yuan
93df871c8c
Assert matching length of evaluation inputs. (#5540) 2020-04-18 06:52:55 +08:00
Jiaming Yuan
c69a19e2b1
Fix skl nan tag. (#5538) 2020-04-18 06:52:17 +08:00
ShvetsKS
a2d86b8e4b
Optimizations for RNG in InitData kernel (#5522) 
* optimizations for subsampling in InitData

* optimizations for subsampling in InitData

Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
 2020-04-16 18:24:32 +03:00
Rory Mitchell
e268fb0093
Use thrust functions instead of custom functions (#5544) 2020-04-16 21:41:16 +12:00
Jiaming Yuan
468b1594d3
Fix CLI model IO. (#5535) 
* Add test for comparing Python and CLI training result.
 2020-04-16 07:48:47 +08:00
Philip Hyunsu Cho
0676a19e70
[jvm-packages] [CI] Publish XGBoost4J JARs with Scala 2.11 and 2.12 (#5539) 2020-04-15 09:32:02 -07:00
Philip Hyunsu Cho
ec02f40d42
[CI] Use Ubuntu 18.04 LTS in JVM CI, because 19.04 is EOL (#5537) 2020-04-15 07:32:46 -07:00