118 Commits

Author SHA1 Message Date
Jiaming Yuan
b3eb5d0945
Use UBJ in Python checkpoint. (#9958) 2024-01-09 03:22:15 +08:00
Jiaming Yuan
9f73127a23
Cleanup Python GPU tests. (#9934)
* Cleanup Python GPU tests.

- Remove the use of `gpu_hist` and `gpu_id` in cudf/cupy tests.
- Move base margin test into the testing directory.
2024-01-04 13:15:18 +08:00
Jiaming Yuan
faf0f2df10
Support dataframe data format in native XGBoost. (#9828)
- Implement a columnar adapter.
- Refactor Python pandas handling code to avoid converting into a single numpy array.
- Add support in R for transforming columns.
- Support R data.frame and factor type.
2023-12-12 09:56:31 +08:00
david-cortes
2c0fc97306
Remove note about multi-quantile being python-only (#9854) 2023-12-07 05:17:15 +08:00
Jiaming Yuan
3ca06ac51e
[doc] Mention data consistency for categorical features. (#9678) 2023-10-24 10:11:33 +08:00
Jiaming Yuan
c75a3bc0a9
[breaking] [jvm-packages] Remove rabit check point. (#9599)
- Add `numBoostedRound` to jvm packages
- Remove rabit checkpoint version.
- Change the starting version of training continuation in JVM [breaking].
- Redefine the checkpoint version policy in jvm package. [breaking]
- Rename the Python check point callback parameter. [breaking]
- Unifies the checkpoint policy between Python and JVM.
2023-09-26 18:06:34 +08:00
Jiaming Yuan
972730cde0
Use matrix for gradient. (#9508)
- Use the `linalg::Matrix` for storing gradients.
- New API for the custom objective.
- Custom objective for multi-class/multi-target is now required to return the correct shape.
- Custom objective for Python can accept arrays with any strides. (row-major, column-major)
2023-08-24 05:29:52 +08:00
Jiaming Yuan
fd4335d0bf
[doc] Document the current status of some features. (#9469) 2023-08-13 23:42:27 +08:00
Jiaming Yuan
f05a23b41c
Use weakref instead of id for DataIter cache. (#9445)
- Fix case where Python reuses id from freed objects.
- Small optimization to column matrix with QDM by using `realloc` instead of copying data.
2023-08-10 00:40:06 +08:00
Jiaming Yuan
851cba931e
Define best_iteration only if early stopping is used. (#9403)
* Define `best_iteration` only if early stopping is used.

This is the behavior specified by the document but not honored in the actual code.

- Don't set the attributes if there's no early stopping.
- Clean up the code for callbacks, and replace assertions with proper exceptions.
- Assign the attributes when early stopping `save_best` is used.
- Turn the attributes into Python properties.

---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2023-07-24 12:43:35 +08:00
Jiaming Yuan
16eb41936d
Handle the new device parameter in dask and demos. (#9386)
* Handle the new `device` parameter in dask and demos.

- Check no ordinal is specified in the dask interface.
- Update demos.
- Update dask doc.
- Update the condition for QDM.
2023-07-15 19:11:20 +08:00
Jiaming Yuan
ee6809e642
Use mmap for external memory. (#9282)
- Have basic infrastructure for mmap.
- Release file write handle.
2023-06-19 18:52:55 +08:00
Jiaming Yuan
1fcc26a6f8
Set ndcg to default for LTR. (#8822)
- Add document.
- Add tests.
- Use `ndcg` with `topk` as default.
2023-06-09 23:31:33 +08:00
Jiaming Yuan
1f9a57d17b
[Breaking] Require format to be specified in input URI. (#9077)
Previously, we use `libsvm` as default when format is not specified. However, the dmlc
data parser is not particularly robust against errors, and the most common type of error
is undefined format.

Along with which, we will recommend users to use other data loader instead. We will
continue the maintenance of the parsers as it's currently used for many internal tests
including federated learning.
2023-04-28 19:45:15 +08:00
Jiaming Yuan
720a8c3273
[doc] Remove parameter type in Python doc strings. (#9005) 2023-04-01 04:04:30 +08:00
Jiaming Yuan
401ce5cf5e
Run linters with the multi output demo. (#8966) 2023-03-28 00:47:28 +08:00
Jiaming Yuan
21a52c7f98
[doc] Add introduction and notes for the sklearn interface. (#8948) 2023-03-23 13:30:42 +08:00
Jiaming Yuan
151882dd26
Initial support for multi-target tree. (#8616)
* Implement multi-target for hist.

- Add new hist tree builder.
- Move data fetchers for tests.
- Dispatch function calls in gbm base on the tree type.
2023-03-22 23:49:56 +08:00
Jiaming Yuan
228a46e8ad
Support learning rate for zero-hessian objectives. (#8866) 2023-03-06 20:33:28 +08:00
Jiaming Yuan
6a892ce281
Specify src path for isort. (#8867) 2023-03-06 17:30:27 +08:00
Jiaming Yuan
cce4af4acf
Initial support for quantile loss. (#8750)
- Add support for Python.
- Add objective.
2023-02-16 02:30:18 +08:00
Jiaming Yuan
e9c178f402
[doc] Document update [skip ci] (#8784)
- Remove version specifics in cat demo.
- Remove aws yarn.
- Update faq.
- Stop mentioning MPI.
- Update sphinx inventory links.
- Fix typo.
2023-02-12 04:25:22 +08:00
Jiaming Yuan
7b3d473593
[doc] Add demo for inference using individual tree. (#8752) 2023-02-07 04:40:18 +08:00
Jiaming Yuan
d6018eb4b9
Remove all use of DeviceQuantileDMatrix. (#8665) 2023-01-17 00:04:10 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
Rory Mitchell
ce0382dcb0
[CI] Refactor tests to reduce CI time. (#8312) 2022-10-12 11:32:06 +02:00
Jiaming Yuan
570f8ae4ba
Use black on more Python files. (#8137) 2022-08-11 01:38:11 +08:00
Praateek Mahajan
ff471b3fab
In PySpark Estimator example use the model with validation_indicator (#8131)
* use the validation_indicator model

* use the validation_indicator model for regression
2022-08-03 13:57:41 +08:00
WeichenXu
f23cc92130
[pyspark] User guide doc and tutorials (#8082)
Co-authored-by: Bobby Wang <wbo4958@gmail.com>
2022-07-19 22:25:14 +08:00
Jiaming Yuan
52d4eda786
Deprecate use_label_encoder in XGBClassifier. (#7822)
* Deprecate `use_label_encoder` in XGBClassifier.

* We have removed the encoder, now prepare to remove the indicator.
2022-04-21 13:14:02 +08:00
Jiaming Yuan
bcce17e688
Remove text loading in basic walk through demo. (#7753) 2022-04-01 00:59:42 +08:00
Jiaming Yuan
4d81c741e9
External memory support for hist (#7531)
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
2022-03-22 00:13:20 +08:00
Jiaming Yuan
cd55823112
Demo for using custom objective with multi-target regression. (#7736) 2022-03-20 17:44:25 +08:00
Jiaming Yuan
1d468e20a4
Optimize GPU evaluation function for categorical data. (#7705)
* Use transform and cache.
2022-02-28 17:46:29 +08:00
Jiaming Yuan
0da7d872ef
[doc] Update for prediction. (#7648) 2022-02-15 05:01:55 +08:00
Jiaming Yuan
0d0abe1845
Support optimal partitioning for GPU hist. (#7652)
* Implement `MaxCategory` in quantile.
* Implement partition-based split for GPU evaluation.  Currently, it's based on the existing evaluation function.
* Extract an evaluator from GPU Hist to store the needed states.
* Added some CUDA stream/event utilities.
* Update document with references.
* Fixed a bug in approx evaluator where the number of data points is less than the number of categories.
2022-02-15 03:03:12 +08:00
Philip Hyunsu Cho
c621775f34
Replace all uses of deprecated function sklearn.datasets.load_boston (#7373)
* Replace all uses of deprecated function sklearn.datasets.load_boston

* More renaming

* Fix bad name

* Update assertion

* Fix n boosted rounds.

* Avoid over regularization.

* Rebase.

* Avoid over regularization.

* Whac-a-mole

Co-authored-by: fis <jm.yuan@outlook.com>
2022-01-30 04:27:57 -08:00
Jiaming Yuan
b4ec1682c6
Update document for multi output and categorical. (#7574)
* Group together categorical related parameters.
* Update documents about multioutput and categorical.
2022-01-19 04:35:17 +08:00
Jiaming Yuan
001503186c
Rewrite approx (#7214)
This PR rewrites the approx tree method to use codebase from hist for better performance and code sharing.

The rewrite has many benefits:
- Support for both `max_leaves` and `max_depth`.
- Support for `grow_policy`.
- Support for mono constraint.
- Support for feature weights.
- Support for easier bin configuration (`max_bin`).
- Support for categorical data.
- Faster performance for most of the datasets. (many times faster)
- Support for prediction cache.
- Significantly better performance for external memory.
- Unites the code base between approx and hist.
2022-01-10 21:15:05 +08:00
Jiaming Yuan
58a6723eb1
Initial support for multioutput regression. (#7514)
* Add num target model parameter, which is configured from input labels.
* Change elementwise metric and indexing for weights.
* Add demo.
* Add tests.
2021-12-18 09:28:38 +08:00
Jiaming Yuan
c024c42dce
Modernize XGBoost Python document. (#7468)
* Use sphinx gallery to integrate examples.
* Remove mock objects.
* Add dask doc inventory.
2021-11-23 23:24:52 +08:00
Jiaming Yuan
45aef75cca
Move skl eval_metric and early_stopping rounds to model params. (#6751)
A new parameter `custom_metric` is added to `train` and `cv` to distinguish the behaviour from the old `feval`.  And `feval` is deprecated.  The new `custom_metric` receives transformed prediction when the built-in objective is used.  This enables XGBoost to use cost functions from other libraries like scikit-learn directly without going through the definition of the link function.

`eval_metric` and `early_stopping_rounds` in sklearn interface are moved from `fit` to `__init__` and is now saved as part of the scikit-learn model.  The old ones in `fit` function are now deprecated. The new `eval_metric` in `__init__` has the same new behaviour as `custom_metric`.

Added more detailed documents for the behaviour of custom objective and metric.
2021-10-28 17:20:20 +08:00
Jiaming Yuan
2eee87423c
Remove old custom objective demo. (#7369)
We have 2 new custom objective demos covering both regression and classification with
accompanying tutorials in documents.
2021-10-27 16:31:48 +08:00
Jiaming Yuan
15685996fc
[doc] Small improvements for categorical data document. (#7330) 2021-10-20 18:04:32 +08:00
Jiaming Yuan
6cdcfe8128
Improve external memory demo. (#7320)
* Use npy format.
* Add evaluation.
* Use make_regression.
2021-10-17 11:25:24 +08:00
Jiaming Yuan
0bd8f21e4e
Add document for categorical data. (#7307) 2021-10-12 16:10:59 +08:00
Jiaming Yuan
0ed979b096
Support more input types for categorical data. (#7220)
* Support more input types for categorical data.

* Shorten the type name from "categorical" to "c".
* Tests for np/cp array and scipy csr/csc/coo.
* Specify the type for feature info.
2021-09-16 20:39:30 +08:00
Jiaming Yuan
d997c967d5
Demo for experimental categorical data support. (#7213) 2021-09-15 08:20:12 +08:00
Jiaming Yuan
7bdedacb54
Document for process_type. (#7135)
* Update document for prune and refresh.

* Add demo.
2021-08-03 13:11:52 +08:00