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Author SHA1 Message Date
Jiaming Yuan
c1a62b5fa2
Expect gpu external memory to fail. (#6381) 2020-11-12 19:24:48 +08:00
Jiaming Yuan
c90f968d92
Update Python documents. (#6376) 2020-11-12 17:51:32 +08:00
Philip Hyunsu Cho
c5645180a6
[R] Fix a crash that occurs with noLD R (#6378) 2020-11-11 21:09:08 -08:00
James Lamb
12d27f43ff
[doc] make Dask distributed example copy-pastable (#6345) 2020-11-11 20:22:17 -08:00
Jiaming Yuan
d711d648cb
Fix label errors in graph visualization (#6369) 2020-11-11 17:44:59 -08:00
Jiaming Yuan
debeae2509
[R] Fix warnings from R check --as-cran (#6374) 
* Remove exit and printf.

* Fix warnings.
 2020-11-11 18:39:37 +08:00
Jiaming Yuan
6e12c2a6f8
[dask] Supoort running on GKE. (#6343) 
* Avoid accessing `scheduler_info()['workers']`.
* Avoid calling `client.gather` inside task.
* Avoid using `client.scheduler_address`.
 2020-11-11 18:04:34 +08:00
Jiaming Yuan
8a17610666
Implement GPU predict leaf. (#6187) 2020-11-11 17:33:47 +08:00
Philip Hyunsu Cho
7f101d1b33
[CI] Remove R check from Jenkins (#6372) 
* Remove R check from Jenkins

* Print stacktrace when CRAN test fail in GitHub Actions

* Add verbose flag in tests/ci_build/print_r_stacktrace.sh

* Fix path in tests/ci_build/print_r_stacktrace.sh
 2020-11-10 22:46:54 -08:00
Jiaming Yuan
a5cfa7841e
Run R check as cran on action. [skip ci] (#6371) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-11-11 12:02:53 +08:00
Jiaming Yuan
43efadea2e
Deterministic data partitioning for external memory (#6317) 
* Make external memory data partitioning deterministic.

* Change the meaning of `page_size` from bytes to number of rows.

* Design a data pool.

* Note for external memory.

* Enable unity build on Windows CI.

* Force garbage collect on test.
 2020-11-11 06:11:06 +08:00
Jean Lescut-Muller
9564886d9f
Update custom_metric_obj.rst (#6367) 2020-11-10 22:29:22 +08:00
Jiaming Yuan
e65e3cf36e
Support shared library in system path. (#6362) 2020-11-10 16:04:25 +08:00
Jiaming Yuan
184e2eac7d
Add period to evaluation monitor. (#6348) 2020-11-10 07:47:48 +08:00
ShvetsKS
d411f98d26
simple fix for static shedule in predict (#6357) 
Co-authored-by: ShvetsKS <kirill.shvets@intel.com>
 2020-11-09 17:01:30 +08:00
Jiaming Yuan
519cee115a
Avoid resetting seed for every configuration. (#6349) 2020-11-06 10:28:35 +08:00
James Lamb
f3a4253984
Ignore files from local Dask development (#6346) 2020-11-05 13:54:46 +08:00
Jack Dunn
51e6531315
Fix missing space in warning message (#6340) 2020-11-04 06:03:16 -05:00
Jiaming Yuan
2cc9662005
Support slicing tree model (#6302) 
This PR is meant the end the confusion around best_ntree_limit and unify model slicing. We have multi-class and random forests, asking users to understand how to set ntree_limit is difficult and error prone.

* Implement the save_best option in early stopping.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-11-02 23:27:39 -08:00
Rory Mitchell
29745c6df2
Fix inclusive scan for large sizes (#6234) 2020-11-03 17:01:43 +13:00
Jiaming Yuan
7756192906
[dask] Fix prediction on DaskDMatrix with multiple meta data. (#6333) 
* Unify the meta handling methods.
 2020-11-02 19:18:44 -05:00
Jiaming Yuan
5a7b3592ed
Optional find_package for sanitizers. (#6329) 2020-11-02 19:17:17 -05:00
Jiaming Yuan
048acf81cd
Enable shap sparse test. (#6332) 2020-11-01 20:59:27 +08:00
Igor Moura
5e1e972aea
Clean up warnings (#6325) 2020-10-30 23:50:29 +08:00
nabokovas
f0fe18fc28
Add a new github actions badge (#6321) 2020-10-30 17:57:21 +08:00
Jiaming Yuan
6ff331b705
Fix Python callback. (#6320) 2020-10-30 05:03:44 +08:00
Sergio Gavilán
b181a88f9f
Reduced some C++ compiler warnings (#6197) 
* Removed some warnings

* Rebase with master

* Solved C++ Google Tests errors made by refactoring in order to remove warnings

* Undo renaming path -> path_

* Fix style check

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-29 12:36:00 -07:00
Jiaming Yuan
c80657b542
Fix flaky data initialization test. (#6318) 2020-10-30 03:11:22 +08:00
Naveed Ahmed Saleem Janvekar
608bda7052
[jvm-packages] add example to handle missing value other than 0 (#5677) 
add example to handle missing value other than 0 under Dealing with missing values section
 2020-10-28 17:24:35 -07:00
Jiaming Yuan
74ea82209b
Lazy import dask libraries. (#6309) 
* Lazy import dask libraries.

* Lint && fix.

* Use short name.
 2020-10-28 15:50:11 -07:00
Jiaming Yuan
dfac5f89e9
Group CLI demo into subdirectory. (#6258) 
CLI is not most developed interface. Putting them into correct directory can help new users to avoid it as most of the use cases are from a language binding.
 2020-10-28 14:40:44 -07:00
James Lamb
6383757dca
[R] allow xgb.plot.importance() calls to fill a grid (#6294) 2020-10-28 14:37:28 -07:00
Tanuja Kirthi Doddapaneni
d261ba029a
Added USE_NCCL_LIB_PATH option to enable user to set NCCL_LIBRARY during build (#6310) 
Description: To enable user to set NCCL_LIBRARY during build
 2020-10-28 14:36:31 -07:00
vcarpani
671971e12e
Compiler warnings (#6286) 
* Fix warnings for json.h

* Fix warnings for metric.h

* Fix warnings for updater_quantile_hist.cc.

* Fix warnings for updater_histmaker.cc.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-28 13:46:15 -07:00
Jiaming Yuan
e8884c4637
Document tree method for feature weights. (#6312) 2020-10-28 13:42:13 -07:00
Philip Hyunsu Cho
143b278267
Mark flaky tests as XFAIL (#6299) 
* Temporarily skip TestGPUUpdaters::test_categorical

* Temporarily skip test_boost_from_prediction[approx]
 2020-10-28 11:50:57 -07:00
Jiaming Yuan
c4da967b5c
Support unity build. (#6295) 
* Support unity build.

* Setup on Windows Jenkins.

* Revert "Setup on Windows Jenkins."

This reverts commit 8345cb8d2b009eec8ae9fa6f16412a7c9b6ec12c.
 2020-10-28 11:49:28 -07:00
Philip Hyunsu Cho
f6169c0b16
[CI] Use separate Docker cache for each CUDA version (#6305) 2020-10-28 11:07:00 -07:00
Jiaming Yuan
3310e208fd
Fix inplace prediction interval. (#6259) 
* Add back the interval in call.
* Make the interval non-optional.
 2020-10-28 13:13:59 +08:00
Jiaming Yuan
cc76724762
Reduce warning. (#6273) 2020-10-27 12:24:19 -07:00
DIVYA CHAUHAN
4e9c4f2d73
Create a tutorial for using the C API in a C/C++ application (#6285) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-27 12:19:20 -07:00
James Lamb
e1de390e6e
[ci] replace 'egrep' with 'grep -E' (#6287) 2020-10-27 12:05:48 -07:00
Rory Mitchell
f0c3ff313f
Update GPUTreeShap, add docs (#6281) 
* Update GPUTreeShap, add docs

* Fix test

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-27 18:22:12 +13:00
Jiaming Yuan
b180223d18
Cleanup RABIT. (#6290) 
* Remove recovery and MPI speed tests.
* Remove readme.
* Remove Python binding.
* Add checks in C API.
 2020-10-27 08:48:22 +08:00
Akira Funahashi
8e0f5a6fc7
Update plugin instructions for CMake build (#6289) 2020-10-26 17:42:07 -07:00
Philip Hyunsu Cho
c8ec62103a
Deprecate LabelEncoder in XGBClassifier; Enable cuDF/cuPy inputs in XGBClassifier (#6269) 
* Deprecate LabelEncoder in XGBClassifier; skip LabelEncoder for cuDF/cuPy inputs

* Add unit tests for cuDF and cuPy inputs with XGBClassifier

* Fix lint

* Clarify warning

* Move use_label_encoder option to XGBClassifier constructor

* Add a test for cudf.Series

* Add use_label_encoder to XGBRFClassifier doc

* Address reviewer feedback
 2020-10-26 13:20:51 -07:00
Jiaming Yuan
bcfab4d726
Revert "Disable JSON full serialization for now. (#6248)" (#6266) 
This reverts commit 6d293020fbfa2c67b532d550fe5d55689662caac.
 2020-10-27 03:30:47 +08:00
Jiaming Yuan
d61b628bf5
Remove RABIT CMake targets. (#6275) 
* Now it's built as part of libxgboost.
* Set correct C API error in RABIT initialization and finalization.
* Remove redundant message.
* Guard the tracker print C API.
 2020-10-27 01:30:20 +08:00
Jiaming Yuan
2686d32a36
Skip dask tests on ARM. (#6267) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-26 15:09:05 +08:00
Philip Hyunsu Cho
677f676172
Use UserWarning for old callback, as DeprecationWarning is not visible (#6270) 2020-10-22 01:10:52 -07:00