Commit Graph
563 Commits
Author SHA1 Message Date
Jiaming Yuan 3e693e4f97 [dask] Fix nthread config with dask sklearn wrapper. (#7633) 2022-02-08 06:38:32 +08:00
Philip Hyunsu Choandfis c621775f34 Replace all uses of deprecated function sklearn.datasets.load_boston (#7373)
* Replace all uses of deprecated function sklearn.datasets.load_boston

* More renaming

* Fix bad name

* Update assertion

* Fix n boosted rounds.

* Avoid over regularization.

* Rebase.

* Avoid over regularization.

* Whac-a-mole

Co-authored-by: fis <jm.yuan@outlook.com>
2022-01-30 04:27:57 -08:00
Philip Hyunsu Cho b4340abf56 Add special handling for multi:softmax in sklearn predict (#7607)
* Add special handling for multi:softmax in sklearn predict

* Add test coverage
2022-01-29 15:54:49 -08:00
Jiaming Yuan 24789429fd Support latest pandas Index type. (#7595) 2022-01-26 18:20:10 +08:00
Jiaming Yuan ef4dae4c0e [dask] Add scheduler address to dask config. (#7581)
- Add user configuration.
- Bring back to the logic of using scheduler address from dask.  This was removed when we were trying to support GKE, now we bring it back and let xgboost try it if direct guess or host IP from user config failed.
2022-01-22 01:56:32 +08:00
Jiaming Yuan 5ddd4a9d06 Small cleanup to tests. (#7585)
* Use random port in dask tests to avoid warnings for occupied port.
* Increase the difficulty of AUC tests.
2022-01-21 06:26:57 +00:00
Jiaming Yuan dac9eb13bd Implement new save_raw in Python. (#7572)
* Expose the new C API function to Python.
* Remove old document and helper script.
* Small optimization to the `save_raw` and Json ctors.
2022-01-19 02:27:51 +08:00
Jiaming Yuan cc06fab9a7 Support distributed CPU env for categorical data. (#7575)
* Add support for cat data in sketch allreduce.
* Share tests between CPU and GPU.
2022-01-18 21:56:07 +08:00
Jiaming Yuan deab0e32ba Validate out of range categorical value. (#7576)
* Use float in CPU categorical set to preserve the input value.
* Check out of range values.
2022-01-18 20:16:19 +08:00
Jiaming Yuan d6ea5cc1ed Cover approx tree method for categorical data tests. (#7569)
* Add tree to df tests.
* Add plotting tests.
* Add histogram tests.
2022-01-16 11:31:40 +08:00
Jiaming Yuan a1bcd33a3b [breaking] Change internal model serialization to UBJSON. (#7556)
* Use typed array for models.
* Change the memory snapshot format.
* Add new C API for saving to raw format.
2022-01-16 02:11:53 +08:00
Jiaming Yuan 13b0fa4b97 Implement get_group. (#7564) 2022-01-16 02:07:42 +08:00
Philip Hyunsu Cho 20c0d60ac7 Restore functionality of max_depth=0 in hist (#7551)
* Restore functionality of max_depth=0 in hist

* Add test case
2022-01-11 01:37:44 +08:00
Jiaming Yuan 001503186c Rewrite approx (#7214)
This PR rewrites the approx tree method to use codebase from hist for better performance and code sharing.

The rewrite has many benefits:
- Support for both `max_leaves` and `max_depth`.
- Support for `grow_policy`.
- Support for mono constraint.
- Support for feature weights.
- Support for easier bin configuration (`max_bin`).
- Support for categorical data.
- Faster performance for most of the datasets. (many times faster)
- Support for prediction cache.
- Significantly better performance for external memory.
- Unites the code base between approx and hist.
2022-01-10 21:15:05 +08:00
Jiaming Yuan 0df2ae63c7 Fix num_boosted_rounds for linear model. (#7538)
* Add note.

* Fix n boosted rounds.
2022-01-05 03:29:33 +08:00
Jiaming Yuan eb1efb54b5 Define feature_names_in_. (#7526)
* Define `feature_names_in_`.
* Raise attribute error if it's not defined.
2022-01-05 01:35:34 +08:00
Jiaming Yuan 8f0a42a266 Initial support for multi-label classification. (#7521)
* Add support in sklearn classifier.
2022-01-04 23:58:21 +08:00
Ginko Balboaandjiamingy 29bfa94bb6 Fix external memory with gpu_hist and subsampling combination bug. (#7481)
Instead of accessing data from the `original_page_`, access the data from the first page of the available batch.

fix #7476

Co-authored-by: jiamingy <jm.yuan@outlook.com>
2021-12-24 11:15:35 +08:00
Xiaochang Wu 59bd1ab17e Skip callback demo test if matplotlib is not installed (#7520) 2021-12-19 08:20:38 +08:00
Jiaming Yuan 58a6723eb1 Initial support for multioutput regression. (#7514)
* Add num target model parameter, which is configured from input labels.
* Change elementwise metric and indexing for weights.
* Add demo.
* Add tests.
2021-12-18 09:28:38 +08:00
Jiaming Yuan 5b1161bb64 Convert labels into tensor. (#7456)
* Add a new ctor to tensor for `initilizer_list`.
* Change labels from host device vector to tensor.
* Rename the field from `labels_` to `labels` since it's a public member.
2021-12-17 00:58:35 +08:00
Jiaming Yuan 70b12d898a [dask] Fix ddqdm with empty partition. (#7510)
* Fix empty partition.

* war.
2021-12-16 20:37:29 +08:00
Jiaming Yuan 05497a9141 [dask] Fix asyncio. (#7508) 2021-12-13 01:48:25 +08:00
Jiaming Yuan b124a27f57 Support scipy sparse in dask. (#7457) 2021-11-23 16:45:36 +08:00
Jiaming Yuan d33854af1b [Breaking] Accept multi-dim meta info. (#7405)
This PR changes base_margin into a 3-dim array, with one of them being reserved for multi-target classification. Also, a breaking change is made for binary serialization due to extra dimension along with a fix for saving the feature weights. Lastly, it unifies the prediction initialization between CPU and GPU. After this PR, the meta info setter in Python will be based on array interface.
2021-11-18 23:02:54 +08:00
Jiaming Yuan 8cc75f1576 Cleanup Python tests. (#7426) 2021-11-14 15:47:05 +08:00
Jiaming Yuan 57a4b4ff64 Handle OMP_THREAD_LIMIT. (#7390) 2021-11-03 15:44:38 +08:00
Jiaming Yuan 154b15060e Move callbacks from fit to __init__. (#7375) 2021-11-02 17:51:42 +08:00
Jiaming Yuan a13321148a Support multi-class with base margin. (#7381)
This is already partially supported but never properly tested. So the only possible way to use it is calling `numpy.ndarray.flatten` with `base_margin` before passing it into XGBoost. This PR adds proper support
for most of the data types along with tests.
2021-11-02 13:38:00 +08:00
Jiaming Yuan 0f7a9b42f1 Use double precision in metric calculation. (#7364) 2021-11-02 12:00:32 +08:00
Jiaming Yuan c6769488b3 Typehint for subset of core API. (#7348) 2021-10-28 20:47:04 +08:00
Jiaming Yuan 45aef75cca Move skl eval_metric and early_stopping rounds to model params. (#6751)
A new parameter `custom_metric` is added to `train` and `cv` to distinguish the behaviour from the old `feval`.  And `feval` is deprecated.  The new `custom_metric` receives transformed prediction when the built-in objective is used.  This enables XGBoost to use cost functions from other libraries like scikit-learn directly without going through the definition of the link function.

`eval_metric` and `early_stopping_rounds` in sklearn interface are moved from `fit` to `__init__` and is now saved as part of the scikit-learn model.  The old ones in `fit` function are now deprecated. The new `eval_metric` in `__init__` has the same new behaviour as `custom_metric`.

Added more detailed documents for the behaviour of custom objective and metric.
2021-10-28 17:20:20 +08:00
Jiaming Yuan 3c4aa9b2ea [breaking] Remove label encoder deprecated in 1.3. (#7357) 2021-10-28 13:24:29 +08:00
Jiaming Yuan ac9bfaa4f2 Handle missing values in dataframe with category dtype. (#7331)
* Replace -1 in pandas initializer.
* Unify `IsValid` functor.
* Mimic pandas data handling in cuDF glue code.
* Check invalid categories.
* Fix DDM sketching.
2021-10-28 03:33:54 +08:00
Jiaming Yuan 2eee87423c Remove old custom objective demo. (#7369)
We have 2 new custom objective demos covering both regression and classification with
accompanying tutorials in documents.
2021-10-27 16:31:48 +08:00
Jiaming Yuan d4349426d8 Re-implement PR-AUC. (#7297)
* Support binary/multi-class classification, ranking.
* Add documents.
* Handle missing data.
2021-10-26 13:07:50 +08:00
Jiaming Yuan f999897615 [dask] Use nthread in DMatrix construction. (#7337)
This is consistent with the thread overriding behavior.
2021-10-20 15:16:40 +08:00
Jiaming Yuan f53da412aa Add typehint to tracker. (#7338) 2021-10-20 12:49:36 +08:00
Jiaming Yuan 298af6f409 Fix weighted samples in multi-class AUC. (#7300) 2021-10-11 15:12:29 +08:00
Jiaming Yuan 69d3b1b8b4 Remove old callback deprecated in 1.3. (#7280) 2021-10-08 17:24:59 +08:00
Jiaming Yuan 578de9f762 Fix cv verbose_eval (#7291) 2021-10-08 12:28:38 +08:00
Jiaming Yuan d8cb395380 Fix gamma neg log likelihood. (#7275) 2021-10-05 16:57:08 +08:00
Jiaming Yuan c735c17f33 Disable callback and ES on random forest. (#7236) 2021-09-17 18:21:17 +08:00
Jiaming Yuan 22d56cebf1 Encode pandas categorical data automatically. (#7231) 2021-09-17 11:09:55 +08:00
Jiaming Yuan 0ed979b096 Support more input types for categorical data. (#7220)
* Support more input types for categorical data.

* Shorten the type name from "categorical" to "c".
* Tests for np/cp array and scipy csr/csc/coo.
* Specify the type for feature info.
2021-09-16 20:39:30 +08:00
Jiaming Yuan 3f38d983a6 Fix prediction configuration. (#7159)
After the predictor parameter was added to the constructor, this configuration was broken.
2021-08-11 16:34:36 +08:00
Jiaming Yuan 8a84be37b8 Pass scikit learn estimator checks for regressor. (#7130)
* Check data shape.
* Check labels.
2021-08-03 18:58:20 +08:00
Jiaming Yuan e2c406f5c8 Support min_delta in early stopping. (#7137)
* Support `min_delta` in early stopping.

* Remove abs_tol.
2021-08-03 14:29:17 +08:00
Jiaming Yuan d080b5a953 Fix model slicing. (#7149)
* Use correct pointer.
* Remove best_iteration/best_score.
2021-08-03 11:51:56 +08:00
Jiaming Yuan 7ee7a95b84 Use upstream URI in distributed quantile tests. (#7129)
* Use upstream URI in distributed quantile tests.

* Fix test cv `PytestAssertRewriteWarning`.
2021-07-27 14:09:49 +08:00