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213 Commits

Author SHA1 Message Date
Philip Hyunsu Cho
6676c28cbc
[CI] Fix Windows wheel to be compatible with Poetry (#8991) 
* [CI] Fix Windows wheel to be compatible with Poetry

* Typo

* Eagerly scan globs to avoid patching same file twice
 2023-03-28 21:32:54 -07:00
Jiaming Yuan
401ce5cf5e
Run linters with the multi output demo. (#8966) 2023-03-28 00:47:28 +08:00
Jiaming Yuan
151882dd26
Initial support for multi-target tree. (#8616) 
* Implement multi-target for hist.

- Add new hist tree builder.
- Move data fetchers for tests.
- Dispatch function calls in gbm base on the tree type.
 2023-03-22 23:49:56 +08:00
Jiaming Yuan
f7ce0ec0df
Upgrade gcc toolchain to 9.x. (#8878) 
* Use new tool chain.

* Use gcc-9.

* Use cmake from system.

* DOn't link leak.
 2023-03-07 08:25:23 -08:00
Jiaming Yuan
6a892ce281
Specify src path for isort. (#8867) 2023-03-06 17:30:27 +08:00
Jiaming Yuan
4d665b3fb0
Restore clang tidy test. (#8861) 2023-03-03 13:47:04 -08:00
Philip Hyunsu Cho
6d8afb2218
[CI] Require C++17 + CMake 3.18; Use CUDA 11.8 in CI (#8853) 
* Update to C++17

* Turn off unity build

* Update CMake to 3.18

* Use MSVC 2022 + CUDA 11.8

* Re-create stack for worker images

* Allocate more disk space for Windows

* Tempiorarily disable clang-tidy

* RAPIDS now requires Python 3.10+

* Unpin cuda-python

* Use latest NCCL

* Use Ubuntu 20.04 in RMM image

* Mark failing mgpu test as xfail
 2023-03-01 09:22:24 -08:00
Jiaming Yuan
cce4af4acf
Initial support for quantile loss. (#8750) 
- Add support for Python.
- Add objective.
 2023-02-16 02:30:18 +08:00
Jiaming Yuan
7b3d473593
[doc] Add demo for inference using individual tree. (#8752) 2023-02-07 04:40:18 +08:00
Jiaming Yuan
0f37a01dd9
Require black formatter for the python package. (#8748) 2023-02-07 01:53:33 +08:00
Philip Hyunsu Cho
dd79ab846f
[CI] Fix failing arm build (#8751) 
* Always install Conda env into /opt/python; use Mamba

* Change ownership of Conda env to buildkite-agent user

* Use unique name

* Fix
 2023-02-03 22:32:48 -08:00
James Lamb
0d8248ddcd
[R] discourage use of regex for fixed string comparisons (#8736) 2023-01-30 18:47:21 +08:00
Jiaming Yuan
9fb12b20a4
Cleanup the callback module. (#8702) 
- Cleanup pylint markers.
- run formatter.
- Update examples of using callback.
 2023-01-22 00:13:49 +08:00
Jiaming Yuan
e27cda7626
[CI] Skip pyspark sparse tests. (#8675) 2023-01-14 05:37:00 +08:00
Jiaming Yuan
badeff1d74
Init estimation for regression. (#8272) 2023-01-11 02:04:56 +08:00
James Lamb
9a98c3726c
[R] [CI] add more linting checks (#8624) 2022-12-29 18:20:36 +08:00
James Lamb
c7e82b5914
[R] enforce lintr checks (fixes #8012) (#8613) 2022-12-25 05:02:56 +08:00
James Lamb
7a07dcf651
[R] resolve line_length_linter warnings (#8565) 
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2022-12-14 21:04:24 +08:00
Philip Hyunsu Cho
35d8447282
[CI] Use conda-forge channel in conda (#8583) 2022-12-11 23:25:29 -08:00
Jiaming Yuan
8824b40961
Update date in release script. [skip ci] (#8574) 2022-12-09 23:16:10 +08:00
James Lamb
ffee35e0f0
[R] [ci] remove dependency on {devtools} (#8563) 2022-12-09 01:21:28 +08:00
James Lamb
05fc6f3ca9
[R] [ci] move linting code out of package (#8545) 2022-12-07 03:18:17 +08:00
Jiaming Yuan
d99bdd1b1e
[CI] Fix github action mismatched glibcxx. (#8551) 
* [CI] Fix github action mismatched glibcxx.

Split up the Linux test to use the toolchain from conda forge.
 2022-12-06 17:42:15 +08:00
Jiaming Yuan
e07245f110
Take datatable as row major input. (#8472) 
* Take datatable as row major input.

Try to avoid a transform with dense table.
 2022-11-24 09:20:13 +08:00
Jiaming Yuan
284dcf8d22
Add script for change version. (#8443) 
- Replace jvm regex replacement script with mvn command.
- Replace cmake script for python version with python script.
- Automate rest of the manual steps.

The script can handle dev branch, rc release, and formal release version.
 2022-11-24 00:06:39 +08:00
Jiaming Yuan
5f1a6fca0d
[R] Use new interface for creating DMatrix from CSR. (#8455) 
* [R] Use new interface for creating DMatrix from CSR.

- CSC is still using the old API.

The old API is not aware of `nthread` parameter, which makes DMatrix to use all available
thread during construction and during transformation lie `SparsePage` -> `CSCPage`.
 2022-11-23 21:36:43 +08:00
Jiaming Yuan
0252d504d8
Fix R package build on CI. (#8445) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 12:18:36 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Jiaming Yuan
a408c34558
Update JSON parser demo with categorical feature. (#8401) 
- Parse categorical features in the Python example.
- Add tests.
- Update document.
 2022-10-28 20:57:43 +08:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Jiaming Yuan
a2593e60bf
Speedup R test on github. (#8388) 2022-10-26 18:02:27 +08:00
Jiaming Yuan
cf70864fa3
Move Python testing utilities into xgboost module. (#8379) 
- Add typehints.
- Fixes for pylint.

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-26 16:56:11 +08:00
Rong Ou
8f3dee58be
Speed up tests with federated learning enabled (#8350) 
* Speed up tests with federated learning enabled

* Re-enable timeouts

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-17 15:17:04 -07:00
Philip Hyunsu Cho
29595102b9
[CI] Set up test analytics for CPU Python tests (#8333) 
* [CI] Set up test analytics for CPU Python tests

* Install test collector
 2022-10-12 23:15:50 -07:00
Philip Hyunsu Cho
2faa744aba
[CI] Test federated learning plugin in the CI (#8325) 2022-10-12 13:57:39 -07:00
Rory Mitchell
ce0382dcb0
[CI] Refactor tests to reduce CI time. (#8312) 2022-10-12 11:32:06 +02:00
Philip Hyunsu Cho
50ff8a2623
More CI improvements (#8313) 
* Reduce clutter in log of Python test

* Set up BuildKite test analytics

* Add separate step for building containers

* Enable incremental update of CI stack; custom agent IAM policy
 2022-10-06 06:33:46 -08:00
Rory Mitchell
909e49e214
Reduce docker image size. (#8306) 2022-10-05 15:55:51 -08:00
Jiaming Yuan
e47b3a3da3
Upgrade mypy. (#8302) 
Some breaking changes were made in mypy.
 2022-10-05 14:31:59 +08:00
Philip Hyunsu Cho
ca0547bb65
[CI] Use RAPIDS 22.10 (#8298) 
* [CI] Use RAPIDS 22.10

* Store CUDA and RAPIDS versions in one place

* Fix

* Add missing #include

* Update gputreeshap submodule

* Fix

* Remove outdated distributed tests
 2022-10-03 23:18:07 -08:00
Philip Hyunsu Cho
9af99760d4
Various CI savings (#8291) 2022-09-30 05:42:56 -07:00
Jiaming Yuan
55cf24cc32
Obtain CSR matrix from DMatrix. (#8269) 2022-09-29 20:41:43 +08:00
Jiaming Yuan
b791446623
Initial support for IPv6 (#8225) 
- Merge rabit socket into XGBoost.
- Dask interface support.
- Add test to the socket.
 2022-09-21 18:06:50 +08:00
Philip Hyunsu Cho
e888eb2fa9
[CI] Migrate CI pipelines from Jenkins to BuildKite (#8142) 
* [CI] Migrate CI pipelines from Jenkins to BuildKite

* Require manual approval

* Less verbose output when pulling Docker

* Remove us-east-2 from metadata.py

* Add documentation

* Add missing underscore

* Add missing punctuation

* More specific instruction

* Better paragraph structure
 2022-09-07 16:29:25 -08:00
Philip Hyunsu Cho
35ef8abc27
[CI] Prune unused archs from libnccl (#8179) 
* [CI] Prune unused archs from libnccl

* Put pruning logic in CI directory

* Don't use --color in grep
 2022-08-21 00:46:16 -08:00
WeichenXu
53d2a733b0
[pyspark] Make Xgboost estimator support using sparse matrix as optimization (#8145) 
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
 2022-08-19 01:57:28 +08:00
Jiaming Yuan
16bca5d4a1
Support CPU input for device QuantileDMatrix. (#8136) 
- Copy `GHistIndexMatrix` to `Ellpack` when needed.
 2022-08-11 21:21:26 +08:00
Jiaming Yuan
d868126c39
[CI] Fix R build on Jenkins. (#8154) 2022-08-11 14:50:03 +08:00