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Author SHA1 Message Date
Rong Ou
a8255ea678
Add an in-memory collective communicator (#8494) 2022-12-01 00:24:12 +08:00
Jiaming Yuan
157e98edf7
Support half type from cupy. (#8487) 2022-11-30 17:56:42 +08:00
Jiaming Yuan
addaa63732
Support null value in CUDA array interface. (#8486) 
* Support null value in CUDA array interface.

- Fix for potential null value in array interface.
- Fix incorrect check on mask stride.

* Simple tests.

* Extract mask.
 2022-11-28 17:48:25 -08:00
Jiaming Yuan
3fc1046fd3
Reduce compiler warnings on CPU-only build. (#8483) 2022-11-29 00:04:16 +08:00
Jiaming Yuan
d666ba775e
Support all pandas nullable integer types. (#8480) 
- Enumerate all pandas integer types.
- Tests for `None`, `nan`, and `pd.NA`
 2022-11-28 22:38:16 +08:00
Jiaming Yuan
f2209c1fe4
Don't shuffle columns in categorical tests. (#8446) 2022-11-28 20:28:06 +08:00
WeichenXu
67ea1c3435
[pyspark] Make QDM optional based on cuDF check (#8471) 2022-11-27 14:58:54 +08:00
Jiaming Yuan
8f97c92541
Support half type for pandas. (#8481) 2022-11-24 12:47:40 +08:00
Jiaming Yuan
e07245f110
Take datatable as row major input. (#8472) 
* Take datatable as row major input.

Try to avoid a transform with dense table.
 2022-11-24 09:20:13 +08:00
Jiaming Yuan
284dcf8d22
Add script for change version. (#8443) 
- Replace jvm regex replacement script with mvn command.
- Replace cmake script for python version with python script.
- Automate rest of the manual steps.

The script can handle dev branch, rc release, and formal release version.
 2022-11-24 00:06:39 +08:00
Jiaming Yuan
5f1a6fca0d
[R] Use new interface for creating DMatrix from CSR. (#8455) 
* [R] Use new interface for creating DMatrix from CSR.

- CSC is still using the old API.

The old API is not aware of `nthread` parameter, which makes DMatrix to use all available
thread during construction and during transformation lie `SparsePage` -> `CSCPage`.
 2022-11-23 21:36:43 +08:00
Nick Becker
58d211545f
explain cpu/gpu interop and link to model IO tutorial (#8450) 2022-11-23 20:58:28 +08:00
Bobby Wang
2dde65f807
[ci] reduce pyspark test time (#8324) 2022-11-21 16:58:00 +08:00
Joyce
3b8a0e08f7
feat: use commit hash instead of version to actions workflows (#8460) 
Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrum@google.com>
 2022-11-17 22:04:11 +08:00
Rong Ou
30b1a26fc0
Remove unused page size constant (#8457) 2022-11-17 11:41:39 +08:00
Otto von Sperling
812d577597
Fix inline code blocks in 'spark_estimator.rst' (#8465) 2022-11-15 05:47:58 +08:00
Robert Maynard
16f96b6cfb
Work with newer thrust and libcudacxx (#8454) 
* Thrust 1.17 removes the experimental/pinned_allocator.

When xgboost is brought into a large project it can
be compiled against Thrust 1.17+ which don't offer
this experimental allocator.

To ensure that going forward xgboost works in all environments we provide a xgboost namespaced version of
the pinned_allocator that previously was in Thrust.
 2022-11-11 04:22:53 +08:00
Gavin Zhang
0c6266bc4a
SO_DOMAIN do not support on IBM i, using getsockname instead (#8437) 
Co-authored-by: GavinZhang <zhanggan@cn.ibm.com>
 2022-11-10 23:54:57 +08:00
Jiaming Yuan
9dd8d70f0e
Fix mypy errors. (#8444) 2022-11-09 13:19:11 +08:00
Jiaming Yuan
0252d504d8
Fix R package build on CI. (#8445) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 12:18:36 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Rong Ou
4449e30184
Always link federated proto statically (#8442) 2022-11-09 07:47:38 +08:00
Jiaming Yuan
ca0f7f2714
[doc] Update C tutorial. [skip ci] (#8436) 
- Use rst references instead of doxygen links.
- Replace deprecated functions.

- Add SaveModel; put free step last [skip ci]

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 07:14:12 +08:00
Jiaming Yuan
0b36f8fba1
[R] Fix CRAN test notes. (#8428) 
- Limit the number of used CPU cores in examples.
- Add a note for the constraint.
- Bring back the cleanup script.
 2022-11-09 02:03:30 +08:00
Rong Ou
8e76f5f595
Use DataSplitMode to configure data loading (#8434) 
* Use `DataSplitMode` to configure data loading
 2022-11-08 16:21:50 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
James Lamb
bf8de227a9
[CI] remove unused import in python tests (#8409) 2022-11-03 22:27:25 +08:00
James Lamb
b1b2524dbb
add files from python tests to .gitignore (#8410) 2022-11-03 07:57:45 +08:00
Rong Ou
99fa8dad2d
Add back xgboost.rabit for backwards compatibility (#8408) 
* Add back xgboost.rabit for backwards compatibility

* fix my errors

* Fix lint

* Use FutureWarning

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-11-01 21:47:41 -07:00
Philip Hyunsu Cho
0db903b471
Fix formatting in NEWS.md [skip ci] 2022-10-31 15:42:31 -07:00
Jiaming Yuan
917cbc0699
1.7 release note. [skip ci] (#8374) 
* Draft for 1.7 release note. [skip ci]

* Wording [skip ci]

* Update with backports [skip ci]

* Apply suggestions from code review [skip ci]

* Apply suggestions from code review [skip ci]

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>

* Update NEWS.md [skip ci]

Co-authored-by: Rory Mitchell <r.a.mitchell.nz@gmail.com>

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Rory Mitchell <r.a.mitchell.nz@gmail.com>
 2022-10-31 09:32:33 -07:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Joyce
7174d60ed2
Fix Scorecard Github Action not working (#8402) 
* chore: create security policy

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: only latest release on security police

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* chore: security policy support on effort base

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>

* Use dedicated e-mail address for security reporting

* fix: upgrade scorecard action version

Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrumu.u@gmail.com>
Signed-off-by: Joyce Brum <joycebrum@google.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-10-28 16:25:43 -04:00
Jiaming Yuan
a408c34558
Update JSON parser demo with categorical feature. (#8401) 
- Parse categorical features in the Python example.
- Add tests.
- Update document.
 2022-10-28 20:57:43 +08:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Jiaming Yuan
f73520bfff
Bump development version to 2.0. (#8390) 2022-10-28 15:21:19 +08:00
Christian Clauss
ae27e228c4
xrange() was removed in Python 3 in favor or range() (#8371) 2022-10-27 16:36:14 +08:00
Yizhi Liu
5699f60a88
Type fix for WebAssembly: use bst_ulong instead of size_t for ncol in CSR conversion. (#8369) 2022-10-26 19:21:45 +08:00
Jiaming Yuan
a2593e60bf
Speedup R test on github. (#8388) 2022-10-26 18:02:27 +08:00
Jiaming Yuan
786aa27134
[doc] Additional notes for release [skip ci] (#8367) 2022-10-26 17:55:15 +08:00
Jiaming Yuan
cf70864fa3
Move Python testing utilities into xgboost module. (#8379) 
- Add typehints.
- Fixes for pylint.

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-26 16:56:11 +08:00
Jiaming Yuan
7e53189e7c
[pyspark] Improve tutorial on enabling GPU support. (#8385) 
- Quote the databricks doc on how to manage dependencies.
- Some wording changes.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-10-26 15:45:54 +08:00
Thomas Stanley
ba9cc43464
Fix acronym (#8386) 2022-10-26 06:22:30 +08:00
Philip Hyunsu Cho
8bb55949ef
Fix building XGBoost with libomp 15 (#8384) 2022-10-25 12:01:11 -07:00
Jiaming Yuan
d0b99bdd95
[pyspark] Add type hint to basic utilities. (#8375) 2022-10-25 17:26:25 +08:00
Jiaming Yuan
1d2f6de573
remove travis status [skip ci] (#8382) 2022-10-24 14:37:33 +08:00
Jiaming Yuan
a3b8bca46a
Remove travis configuration file. [skip ci] (#8381) 2022-10-23 02:49:29 +08:00
Jiaming Yuan
bb5e18c29c
Fix CUDA async stream. (#8380) 2022-10-22 23:13:28 +08:00
Christian Clauss
5761f27e5e
Use ==/!= to compare constant literals (str, bytes, int, float, tuple) (#8372) 2022-10-22 21:53:03 +08:00
Jiaming Yuan
99467f3999
[doc] Cleanup outdated documents for GPU. [skip ci] (#8378) 2022-10-21 20:13:31 +08:00