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Author SHA1 Message Date
Philip Hyunsu Cho
78d231264a
[CI] Enable faulthandler to show details when 0xC0000005 error occurs (#7771) 2022-03-30 19:16:54 -07:00
Jiaming Yuan
4615fa51ef
Drop support for deprecated CUDA architecture. (#7767) 
* Drop support for deprecated CUDA architecture.

* Check file size at release branch.

* Use 200 MB limit

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-30 15:16:35 -07:00
Jiaming Yuan
4bd5a33b10
Make rc1 release. (#7764) v1.6.0rc1 2022-03-30 21:32:40 +08:00
Jiaming Yuan
9150fdbd4d
Support pandas nullable types. (#7760) 2022-03-30 08:51:52 +08:00
Jiaming Yuan
d4796482b5
Fix failures on R hub and Win builder. (#7763) 
* Update date.
* Workaround amalgamation build with clang. (SimpleDMatrix instantiation)
* Workaround compiler error with driver push.
* Revert autoconf requirement.
* Fix model IO on 32-bit environment. (i386)
* Clarify the function name.
 2022-03-30 07:14:33 +08:00
Jiaming Yuan
a50b84244e
Cleanup configuration for constraints. (#7758) 2022-03-29 04:22:46 +08:00
Jiaming Yuan
3c9b04460a
Move num_parallel_tree to model parameter. (#7751) 
The size of forest should be a property of model itself instead of a training
hyper-parameter.
 2022-03-29 02:32:42 +08:00
Jiaming Yuan
8b3ecfca25
Mitigate flaky tests. (#7749) 
* Skip non-increasing test with external memory when subsample is used.
* Increase bin numbers for boost from prediction test. This mitigates the effect of
  non-deterministic partitioning.
 2022-03-28 21:20:50 +08:00
Christian Marquardt
39c5616af2
Added CPPFLAGS and LDFLAGS to the testing for OpenMP during R installation from source. (#7759) 2022-03-28 19:14:07 +08:00
Haoming Chen
b37ff3d492
Fix cox objective test by using XGBOOST_PARALLEL_STABLE_SORT (#7756) 2022-03-26 17:58:30 +08:00
Jiaming Yuan
b3ba0e8708
Check cupy lazily. (#7752) 2022-03-26 06:09:58 +08:00
Jiaming Yuan
af0cf88921
Workaround compiler error. (#7745) 2022-03-25 17:05:14 +08:00
Jiaming Yuan
64575591d8
Use context in SetInfo. (#7687) 
* Use the name `Context`.
* Pass a context object into `SetInfo`.
* Add context to proxy matrix.
* Add context to iterative DMatrix.

This is to remove the use of the default number of threads during `SetInfo` as a follow-up on
removing the global omp variable while preparing for CUDA stream semantic.  Currently, XGBoost
uses the legacy CUDA stream, we will gradually remove them in the future in favor of non-blocking streams.
 2022-03-24 22:16:26 +08:00
Oleksandr Pryimak
f5b20286e2
[jvm-packages] Launch dev jvm image under my user (#4676) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-03-23 10:39:51 -07:00
Chengyang
c92ab2ce49
Add type hints to core.py (#7707) 
Co-authored-by: Chengyang Gu <bridgream@gmail.com>
Co-authored-by: jiamingy <jm.yuan@outlook.com>
 2022-03-23 21:12:14 +08:00
Philip Hyunsu Cho
66cb4afc6c
Update install doc (#7747) 2022-03-23 17:20:01 +08:00
Aging
f20ffa8db3
Update JVM dev build Dockerfile and shell script (#6792) 
Co-authored-by: Zhuo Yuzhen <yuzhuo@paypal.com>
 2022-03-22 16:39:10 -07:00
Jiaming Yuan
4d81c741e9
External memory support for hist (#7531) 
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
 2022-03-22 00:13:20 +08:00
Jiaming Yuan
cd55823112
Demo for using custom objective with multi-target regression. (#7736) 2022-03-20 17:44:25 +08:00
Jiaming Yuan
996cc705af
Small cleanup to hist tree method. (#7735) 
* Remove special optimization using number of bins.
* Remove 1-based index for column sampling.
* Remove data layout.
* Unify update prediction cache.
 2022-03-20 03:44:55 +08:00
Jiaming Yuan
718472dbe2
[CI] Upgrade GitHub action Windows workers. (#7739) 2022-03-20 01:44:33 +08:00
Jiaming Yuan
9a400731d9
Replace device sync with stream sync. (#7737) 2022-03-19 23:22:23 +08:00
Jiaming Yuan
da351621a1
[R] Fix parsing decision stump. (#7689) 2022-03-17 01:08:22 +08:00
Jiaming Yuan
e78a38b837
Sort sparse page index when constructing DMatrix. (#7731) 2022-03-16 18:01:05 +08:00
Xiaochang Wu
613ec36c5a
Support building SimpleDMatrix from Arrow data format (#7512) 
* Integrate with Arrow C data API.
* Support Arrow dataset.
* Support Arrow table.

Co-authored-by: Xiaochang Wu <xiaochang.wu@intel.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Zhang Zhang <zhang.zhang@intel.com>
 2022-03-15 13:25:19 +08:00
William Hicks
6b6849b001
Correct xgboost-config directory for inclusion in other projects (#7730) 2022-03-15 03:18:44 +08:00
Jiaming Yuan
98d6faefd6
Implement slope for Pseduo-Huber. (#7727) 
* Add objective and metric.
* Some refactoring for CPU/GPU dispatching using linalg module.
 2022-03-14 21:42:38 +08:00
Daniel Clausen
4dafb5fac8
[JVM-Packages] Add support for detecting musl-based Linux (#7624) 
Co-authored-by: Marc Philipp <marc@gradle.com>
 2022-03-14 00:37:27 +08:00
Haoming Chen
04fc575c0e
Run tests in a temporary directory (#7723) 
Fix some tests to run in a temporary directory in case the root
directory is not writable. Note that most of tests are already
running in the temporary directory, so this PR just make them
consistent.
 2022-03-12 21:24:36 +08:00
Haoming Chen
55463b76c1
Initialize TreeUpdater ctx_ with nullptr (#7722) 2022-03-10 22:33:32 +08:00
Jiaming Yuan
a62a3d991d
[dask] prediction with categorical data. (#7708) 2022-03-10 00:21:48 +08:00
Pradipta Ghosh
68b6d6bbe2
Fix for Feature shape mismatch error (#7715) 2022-03-03 21:36:29 +08:00
Cheng Li
a92e0f6240
multi groups in the constraints (#7711) 2022-03-01 18:10:15 +08:00
Jiaming Yuan
1d468e20a4
Optimize GPU evaluation function for categorical data. (#7705) 
* Use transform and cache.
 2022-02-28 17:46:29 +08:00
Jiaming Yuan
18a4af63aa
Update documents and tests. (#7659) 
* Revise documents after recent refactoring and cat support.
* Add tests for behavior of max_depth and max_leaves.
 2022-02-26 03:57:47 +08:00
Jiaming Yuan
5eed2990ad
Fix file descriptor leak. (#7704) 2022-02-25 17:49:33 +08:00
Philip Hyunsu Cho
1b25dd59f9
Use CUDA 11 in clang-tidy (#7701) 
* Show command args when clang-tidy fails

* Add option to specify CUDA args

* Use clang-tidy 11

* [CI] Use CUDA 11
 2022-02-24 15:15:07 -08:00
Jiaming Yuan
83a66b4994
Support categorical data for hist. (#7695) 
* Extract partitioner from hist.
* Implement categorical data support by passing the gradient index directly into the partitioner.
* Organize/update document.
* Remove code for negative hessian.
 2022-02-25 03:47:14 +08:00
Jiaming Yuan
f60d95b0ba
[R] Construct booster object in load.raw. (#7686) 2022-02-24 10:06:18 +08:00
Bobby Wang
89aa8ddf52
[jvm-packages] fix the prediction issue for multi:softmax (#7694) 2022-02-24 01:09:45 +08:00
Jiaming Yuan
6762c45494
Small cleanup to gradient index and hist. (#7668) 
* Code comments.
* Const accessor to index.
* Remove some weird variables in the `Index` class.
* Simplify the `MemStackAllocator`.
 2022-02-23 11:37:21 +08:00
Jiaming Yuan
49c74a5369
Update R package description. (#7691) 
* Change role.
* Remove cmake file when building the package.
 2022-02-23 08:36:37 +08:00
Bobby Wang
e3e6de5ed9
[jvm-packages] unify the set features API (#7692) 
xgboost4j-spark provides 2 sets of API for setting features, one for CPU, another for GPU, which may cause confusion.

This PR removes the GPU API and adds an override CPU function setFeaturesCol to accept Array[String] parameters.
 2022-02-23 03:37:25 +08:00
Jiaming Yuan
c859764d29
[doc] Clarify that states in callbacks are mutated. (#7685) 
* Fix copy for cv.  This prevents inserting default callbacks into the input list.
* Clarify the behavior of callbacks in training/cv.
* Fix typos in doc.
 2022-02-22 11:45:00 +08:00
Jiaming Yuan
584bae1fc6
Fix document build with scikit-learn (#7684) 
* Require sphinx >= 4.4 for RTD.

* Install sklearn.
 2022-02-22 08:58:54 +08:00
Jiaming Yuan
e56d1779e1
Require Python 3.7. (#7682) 
* Update setup.py.
 2022-02-21 05:46:48 +08:00
Jiaming Yuan
549f3bd781
Honor CPU counts from CFS. (#7654) 2022-02-21 03:13:26 +08:00
Jiaming Yuan
671b3c8d8e
Fix typo. (#7680) 2022-02-20 03:42:47 +08:00
Jiaming Yuan
b2341eab0c
[R] Fix broken links. (#7670) 2022-02-20 00:55:48 +08:00
Bobby Wang
131858e7cb
[jvm-packages] Do not repartition when nWorker = 1 (#7676) 2022-02-19 21:45:54 +08:00