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Author SHA1 Message Date
Philip Hyunsu Cho
5f3c811e84
[CI] Assign larger /dev/shm to NCCL (#5966) 
* [CI] Assign larger /dev/shm to NCCL

* Use 10.2 artifact to run multi-GPU Python tests

* Add CUDA 10.0 -> 11.0 cross-version test; remove CUDA 10.0 target
 2020-07-31 10:05:04 -07:00
Philip Hyunsu Cho
3fcfaad577
Add CMake flag to log C API invocations, to aid debugging (#5925) 
* Add CMake flag to log C API invocations, to aid debugging

* Remove unnecessary parentheses
 2020-07-30 19:24:28 -07:00
James Bourbeau
3b88bc948f
Update XGBoost + Dask overview documentation (#5961) 
* Add imports to code snippet

* Better writing.
 2020-07-31 09:58:50 +08:00
Jiaming Yuan
70903c872f
Force colored output for ninja build. (#5959) 2020-07-30 20:48:03 +08:00
boxdot
d268a2a463
Thread-safe prediction by making the prediction cache thread-local. (#5853) 
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2020-07-30 12:33:50 +08:00
Jiaming Yuan
fa3715f584
[Dask] Asyncio support. (#5862) 2020-07-30 06:23:58 +08:00
Jiaming Yuan
e4a273e1da
Fix evaluate root split. (#5948) 2020-07-29 19:33:29 +08:00
Philip Hyunsu Cho
071e10c1d1
[CI] Fix broken Docker container 'cpu' (#5956) 2020-07-29 04:29:57 -07:00
Jiaming Yuan
f5fdcbe194
Disable feature validation on sklearn predict prob. (#5953) 
* Fix issue when scikit learn interface receives transformed inputs.
 2020-07-29 19:26:44 +08:00
Jiaming Yuan
18349a7ccf
[Breaking] Fix custom metric for multi output. (#5954) 
* Set output margin to true for custom metric.  This fixes only R and Python.
 2020-07-29 19:25:27 +08:00
Jiaming Yuan
75b8c22b0b
Fix prediction heuristic (#5955) 
* Relax check for prediction.
* Relax test in spark test.
* Add tests in C++.
 2020-07-29 19:24:07 +08:00
Philip Hyunsu Cho
5879acde9a
[CI] Improve R linter script (#5944) 
* [CI] Move lint to a separate script

* [CI] Improved lintr launcher

* Add lintr as a separate action

* Add custom parsing logic to print out logs

* Fix lintr issues in demos

* Run R demos

* Fix CRAN checks

* Install XGBoost into R env before running lintr

* Install devtools (needed to run demos)
 2020-07-27 00:55:35 -07:00
Bobby Wang
8943eb4314
[BLOCKING] [jvm-packages] add gpu_hist and enable gpu scheduling (#5171) 
* [jvm-packages] add gpu_hist tree method

* change updater hist to grow_quantile_histmaker

* add gpu scheduling

* pass correct parameters to xgboost library

* remove debug info

* add use.cuda for pom

* add CI for gpu_hist for jvm

* add gpu unit tests

* use gpu node to build jvm

* use nvidia-docker

* Add CLI interface to create_jni.py using argparse

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-07-26 21:53:24 -07:00
Philip Hyunsu Cho
6347fa1c2e
[R] Enable weighted learning to rank (#5945) 
* [R] enable weighted learning to rank

* Add R unit test for ranking

* Fix lint
 2020-07-26 21:10:36 -07:00
Philip Hyunsu Cho
ace7fd328b
[R] Add a compatibility layer to load Booster object from an old RDS file (#5940) 
* [R] Add a compatibility layer to load Booster from an old RDS
* Modify QuantileHistMaker::LoadConfig() to be backward compatible with 1.1.x
* Add a big warning about compatibility in QuantileHistMaker::LoadConfig()
* Add testing suite
* Discourage use of saveRDS() in CRAN doc
 2020-07-26 00:06:49 -07:00
Jiaming Yuan
40361043ae
[BLOCKING] Remove to_string. (#5934) 2020-07-26 10:21:26 +08:00
Philip Hyunsu Cho
12110c900e
[CI] Make Python model compatibility test runnable locally (#5941) 2020-07-25 16:58:02 -07:00
Philip Hyunsu Cho
487ab0ce73
[BLOCKING] Handle empty rows in data iterators correctly (#5929) 
* [jvm-packages] Handle empty rows in data iterators correctly

* Fix clang-tidy error

* last empty row

* Add comments [skip ci]

Co-authored-by: Nan Zhu <nanzhu@uber.com>
 2020-07-25 13:46:19 -07:00
Jiaming Yuan
a4de2f68e4
Use cudaOccupancyMaxPotentialBlockSize to calculate the block size. (#5926) 2020-07-23 14:24:42 +08:00
Jiaming Yuan
fbfbd525d8
Cache dependencies on Github Action. (#5928) 2020-07-23 14:00:19 +08:00
Philip Hyunsu Cho
4af857f95d
Add explicit template specialization for portability (#5921) 
* Add explicit template specializations

* Adding Specialization for FileAdapterBatch
 2020-07-22 12:31:17 -07:00
Jiaming Yuan
bc1d3ee230
Fix r early stop with custom objective. (#5923) 
* Specify `ntreelimit`.
 2020-07-23 03:28:17 +08:00
Jiaming Yuan
30363d9c35
Remove R and JVM from appveyor. (#5922) 2020-07-23 03:26:48 +08:00
Jiaming Yuan
66cc1e02aa
Setup github action. (#5917) 2020-07-22 15:05:25 +08:00
Philip Hyunsu Cho
627cf41a60
Add option to enable all compiler warnings in GCC/Clang (#5897) 
* Add option to enable all compiler warnings in GCC/Clang

* Fix -Wall for CUDA sources

* Make -Wall private req for xgboost-r
 2020-07-21 23:34:03 -07:00
Jiaming Yuan
9b688aca3b
Fix mingw build with R. (#5918) 2020-07-22 02:56:49 +08:00
Philip Hyunsu Cho
8d7702766a
[Doc] Document new objectives and metrics available on GPUs (#5909) 2020-07-21 02:10:59 -07:00
Jiaming Yuan
03fb98fbde
Fix typo in CI. [skip ci] (#5919) 2020-07-21 14:25:27 +08:00
Jiaming Yuan
8b1afce316
Add Github Action for R. (#5911) 
* Fix lintr errors.
 2020-07-20 19:23:36 +08:00
Andy Adinets
b3d2e7644a
Support building XGBoost with CUDA 11 (#5808) 
* Change serialization test.
* Add CUDA 11 tests on Linux CI.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-07-20 07:58:41 +08:00
Philip Hyunsu Cho
ac9136ee49
Further improvements and savings in Jenkins pipeline (#5904) 
* Publish artifacts only on the master and release branches

* Build CUDA only for Compute Capability 7.5 when building PRs

* Run all Windows jobs in a single worker image

* Build nightly XGBoost4J SNAPSHOT JARs with Scala 2.12 only

* Show skipped Python tests on Windows

* Make Graphviz optional for Python tests

* Add back C++ tests

* Unstash xgboost_cpp_tests

* Fix label to CUDA 10.1

* Install cuPy for CUDA 10.1

* Install jsonschema

* Address reviewer's feedback
 2020-07-18 03:30:40 -07:00
Jiaming Yuan
6c0c87216f
Fix Windows 2016 build. (#5902) 2020-07-18 05:50:17 +08:00
Philip Hyunsu Cho
71b0528a2f
GPU implementation of AFT survival objective and metric (#5714) 
* Add interval accuracy

* De-virtualize AFT functions

* Lint

* Refactor AFT metric using GPU-CPU reducer

* Fix R build

* Fix build on Windows

* Fix copyright header

* Clang-tidy

* Fix crashing demo

* Fix typos in comment; explain GPU ID

* Remove unnecessary #include

* Add C++ test for interval accuracy

* Fix a bug in accuracy metric: use log pred

* Refactor AFT objective using GPU-CPU Transform

* Lint

* Fix lint

* Use Ninja to speed up build

* Use time, not /usr/bin/time

* Add cpu_build worker class, with concurrency = 1

* Use concurrency = 1 only for CUDA build

* concurrency = 1 for clang-tidy

* Address reviewer's feedback

* Update link to AFT paper
 2020-07-17 01:18:13 -07:00
Jiaming Yuan
7c2686146e
Dask device dmatrix (#5901) 
* Fix softprob with empty dmatrix.
 2020-07-17 13:17:43 +08:00
Jiaming Yuan
e471056ec4
Fix sketch size calculation. (#5898) 2020-07-17 08:33:16 +08:00
Bobby Wang
730866a7bc
[CI] update spark version to 3.0.0 (#5890) 
* [CI] update spark version to 3.0.0

* Update Dockerfile.jvm_cross

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-07-16 00:23:44 -07:00
Jiaming Yuan
029a8b533f
Simplify the data backends. (#5893) 2020-07-16 15:17:31 +08:00
Philip Hyunsu Cho
7aee0e51ed
Fix R package build with CMake 3.13 (#5895) 
* Fix R package build with CMake 3.13

* Require OpenMP for xgboost-r target
 2020-07-15 20:22:11 -07:00
Philip Hyunsu Cho
3c40f4a7f5
[CI] Reduce load on Windows CI pipeline (#5892) 2020-07-14 18:47:05 -07:00
Jiaming Yuan
3cae287dea
Fix NDK Build. (#5886) 
* Explicit cast for slice.
 2020-07-14 18:34:19 +08:00
Alexander Gugel
970b4b3fa2
Add XGBoosterGetNumFeature (#5856) 
- add GetNumFeature to Learner
- add XGBoosterGetNumFeature to C API
- update c-api-demo accordingly
 2020-07-13 23:25:17 -07:00
Philip Hyunsu Cho
e0c179c7cc
[CI] Enforce daily budget in Jenkins CI (#5884) 
* [CI] Throttle Jenkins CI

* Don't use Jenkins master instance
 2020-07-13 21:51:11 -07:00
Jiaming Yuan
dd445af56e
Cleanup on device sketch. (#5874) 
* Remove old functions.

* Merge weighted and un-weighted into a common interface.
 2020-07-14 10:15:54 +08:00
Bobby Wang
9f85e92602
[jvm-packages] update spark dependency to 3.0.0 (#5836) 2020-07-12 20:58:30 -07:00
Philip Hyunsu Cho
23e2c6ec91
Upgrade Rabit (#5876) 2020-07-09 16:18:33 -07:00
Zhang Zhang
1813804e36
Add new parameter singlePrecisionHistogram to xgboost4j-spark (#5811) 
Expose the existing 'singlePrecisionHistogram' param to the Spark layer.
 2020-07-08 16:29:35 -07:00
Philip Hyunsu Cho
0d411b0397
[CI] Simplify CMake build with modern CMake techniques (#5871) 
* [CI] Simplify CMake build

* Make sure that plugins can be built

* [CI] Install lz4 on Mac
 2020-07-08 04:23:24 -07:00
Philip Hyunsu Cho
22a31b1faa
[Doc] Document that CUDA 10.0 is required [skip ci] (#5872) 2020-07-07 18:55:19 -07:00
Rong Ou
06320729d4
fix device sketch with weights in external memory mode (#5870) 2020-07-08 08:44:07 +08:00
Jiaming Yuan
d0a29c3135
Remove print. (#5867) 2020-07-08 04:12:14 +08:00