472 Commits

Author SHA1 Message Date
Michael Mayer
52620fdb34
[R] Improve more docstrings (#9919) 2023-12-26 17:30:13 +08:00
Michael Mayer
b807f3e30c
[R] improve docstrings for "xgb.Booster.R" (#9906) 2023-12-21 10:01:30 +08:00
david-cortes
ff3d82c006
[R] Refactor field logic for dmatrix (#9901) 2023-12-18 20:31:01 +08:00
david-cortes
cd473c9da3
[R] enable multi-dimensional base_margin (#9885) 2023-12-14 09:16:53 +08:00
david-cortes
42173d7bc3
[doc] Clarify the effect of enable_categorical (#9877) 2023-12-13 08:39:41 +08:00
david-cortes
ddab49a8be
[doc][R] Update arguments for ellipsis in predict (#9868) 2023-12-12 12:13:47 +08:00
Jiaming Yuan
faf0f2df10
Support dataframe data format in native XGBoost. (#9828)
- Implement a columnar adapter.
- Refactor Python pandas handling code to avoid converting into a single numpy array.
- Add support in R for transforming columns.
- Support R data.frame and factor type.
2023-12-12 09:56:31 +08:00
david-cortes
562352101d
[R] Move all DMatrix fields to function arguments (#9862) 2023-12-10 02:45:28 +08:00
david-cortes
9e9d41b95c
[R] Add note about serialization of DMatrix objects (#9853) 2023-12-07 03:11:15 +08:00
david-cortes
1de3f4135c
[R] Enable vector-valued parameters (#9849) 2023-12-06 20:32:20 +08:00
david-cortes
62571b79eb
[R] Enable multi-output objectives (#9839) 2023-12-06 03:13:14 +08:00
david-cortes
bfa1252fca
[R][doc] Update docs about fitting from CSR (#9818) 2023-11-29 05:42:41 +08:00
david-cortes
d3f0646779
[R] Avoid modifying importance dt in-place, fix aggregation (#9740) 2023-11-01 05:10:59 +08:00
James Lamb
799f8485e2
[R] [CI] enforce lintr::function_left_parentheses_linter check (#9631) 2023-10-08 09:42:09 +08:00
Jiaming Yuan
cac2cd2e94
[R] Set number of threads in demos and tests. (#9591)
- Restrict the number of threads in IO.
- Specify the number of threads in demos and tests.
- Add helper scripts for checks.
2023-09-23 21:44:03 +08:00
Jiaming Yuan
5abe50ff8c
[R] Fix method name. (#9577) 2023-09-13 23:19:29 +08:00
Jiaming Yuan
be6a552956
[R] Support multi-class custom objective. (#9526) 2023-08-29 08:27:13 +08:00
Jiaming Yuan
972730cde0
Use matrix for gradient. (#9508)
- Use the `linalg::Matrix` for storing gradients.
- New API for the custom objective.
- Custom objective for multi-class/multi-target is now required to return the correct shape.
- Custom objective for Python can accept arrays with any strides. (row-major, column-major)
2023-08-24 05:29:52 +08:00
James Lamb
b82e78c169
[R] remove commented-out code (#9481) 2023-08-15 13:44:08 +08:00
James Lamb
e3f624d8e7
[R] remove more uses of default values in internal functions (#9476) 2023-08-14 22:18:33 +08:00
James Lamb
2c84daeca7
[R] [doc] remove documentation index entries for internal functions (#9477) 2023-08-14 22:18:02 +08:00
James Lamb
428f6cbbe2
[R] remove default values in internal booster manipulation functions (#9461) 2023-08-11 15:07:18 +08:00
James Lamb
44bd2981b2
[R] remove default values in internal utility functions (#9457) 2023-08-10 21:40:59 +08:00
James Lamb
4359356d46
[R] [CI] use lintr 3.1.0 (#9456) 2023-08-10 17:49:16 +08:00
Jiaming Yuan
a57371ef7c
Fix links in R doc. (#9450) 2023-08-10 02:38:14 +08:00
Philip Hyunsu Cho
819098a48f
[R] Handle UTF-8 paths on Windows (#9448) 2023-08-08 21:29:19 -07:00
Jiaming Yuan
9fbde21e9d
Rework the precision metric. (#9222)
- Rework the precision metric for both CPU and GPU.
- Mention it in the document.
- Cleanup old support code for GPU ranking metric.
- Deterministic GPU implementation.

* Drop support for classification.

* type.

* use batch shape.

* lint.

* cpu build.

* cpu build.

* lint.

* Tests.

* Fix.

* Cleanup error message.
2023-06-02 20:49:43 +08:00
Jiaming Yuan
cd05e38533
[doc][R] Update link. (#8998) 2023-03-30 19:09:07 +08:00
Krzysztof Dyba
e8a69013e6
[R] update predict docs (#8886) 2023-03-09 05:58:39 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672)
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
2023-02-05 01:59:46 +08:00
James Lamb
0d8248ddcd
[R] discourage use of regex for fixed string comparisons (#8736) 2023-01-30 18:47:21 +08:00
Philip Hyunsu Cho
d29e45371f
[R-package] Alter xgb.train() to accept multiple eval metrics as a list (#8657) 2023-01-24 17:14:14 -08:00
Jiaming Yuan
e7d612d22c
[R] Fix threads used to create DMatrix in predict. (#8681) 2023-01-15 03:09:08 +08:00
James Lamb
9a98c3726c
[R] [CI] add more linting checks (#8624) 2022-12-29 18:20:36 +08:00
James Lamb
c7e82b5914
[R] enforce lintr checks (fixes #8012) (#8613) 2022-12-25 05:02:56 +08:00
James Lamb
17ce1f26c8
[R] address some lintr warnings (#8609) 2022-12-17 18:36:14 +08:00
James Lamb
7a07dcf651
[R] resolve line_length_linter warnings (#8565)
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2022-12-14 21:04:24 +08:00
James Lamb
fbe40d00d8
[R] resolve brace_linter warnings (#8564) 2022-12-08 23:01:00 +08:00
Jiaming Yuan
5f1a6fca0d
[R] Use new interface for creating DMatrix from CSR. (#8455)
* [R] Use new interface for creating DMatrix from CSR.

- CSC is still using the old API.

The old API is not aware of `nthread` parameter, which makes DMatrix to use all available
thread during construction and during transformation lie `SparsePage` -> `CSCPage`.
2022-11-23 21:36:43 +08:00
Jiaming Yuan
0b36f8fba1
[R] Fix CRAN test notes. (#8428)
- Limit the number of used CPU cores in examples.
- Add a note for the constraint.
- Bring back the cleanup script.
2022-11-09 02:03:30 +08:00
Jiaming Yuan
210eb471e9
[R] Implement feature info for DMatrix. (#8048) 2022-07-09 05:57:39 +08:00
Michael Chirico
3af02584c1
error early if missing DiagrammeR (#8037) 2022-07-02 19:37:53 +08:00
Jiaming Yuan
da351621a1
[R] Fix parsing decision stump. (#7689) 2022-03-17 01:08:22 +08:00
Jiaming Yuan
f60d95b0ba
[R] Construct booster object in load.raw. (#7686) 2022-02-24 10:06:18 +08:00
Jiaming Yuan
b2341eab0c
[R] Fix broken links. (#7670) 2022-02-20 00:55:48 +08:00
Jiaming Yuan
12949c6b31
[R] Implement feature weights. (#7660) 2022-02-16 22:20:52 +08:00
david-cortes
7f738e7f6f
[R] Accept CSR data for predictions (#7615) 2022-01-30 00:54:57 +08:00
Jiaming Yuan
81210420c6
Remove omp_get_max_threads (#7608)
This is the one last PR for removing omp global variable.

* Add context object to the `DMatrix`.  This bridges `DMatrix` with https://github.com/dmlc/xgboost/issues/7308 .
* Require context to be available at the construction time of booster.
* Add `n_threads` support for R csc DMatrix constructor.
* Remove `omp_get_max_threads` in R glue code.
* Remove threading utilities that rely on omp global variable.
2022-01-28 16:09:22 +08:00
Philip Hyunsu Cho
028bdc1740
[R] Fix typo in docstring (#7606) 2022-01-26 23:33:25 +08:00
Jiaming Yuan
d262503781
[R] Implement new save raw in R. (#7571) 2022-01-22 20:55:47 +08:00