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1247 Commits

Author SHA1 Message Date
Jiaming Yuan
5f1a6fca0d
[R] Use new interface for creating DMatrix from CSR. (#8455) 
* [R] Use new interface for creating DMatrix from CSR.

- CSC is still using the old API.

The old API is not aware of `nthread` parameter, which makes DMatrix to use all available
thread during construction and during transformation lie `SparsePage` -> `CSCPage`.
 2022-11-23 21:36:43 +08:00
Bobby Wang
2dde65f807
[ci] reduce pyspark test time (#8324) 2022-11-21 16:58:00 +08:00
Jiaming Yuan
0252d504d8
Fix R package build on CI. (#8445) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 12:18:36 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Rong Ou
8e76f5f595
Use DataSplitMode to configure data loading (#8434) 
* Use `DataSplitMode` to configure data loading
 2022-11-08 16:21:50 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
Rong Ou
99fa8dad2d
Add back xgboost.rabit for backwards compatibility (#8408) 
* Add back xgboost.rabit for backwards compatibility

* fix my errors

* Fix lint

* Use FutureWarning

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-11-01 21:47:41 -07:00
Jiaming Yuan
2ed3c29c8a
[CI] Cleanup github action tests. (#8397) 
- Merge doxygen build with sphinx.
- Use mamba on non-windows Github Action.
 2022-10-29 06:04:27 +08:00
Jiaming Yuan
a408c34558
Update JSON parser demo with categorical feature. (#8401) 
- Parse categorical features in the Python example.
- Add tests.
- Update document.
 2022-10-28 20:57:43 +08:00
Jiaming Yuan
cfd2a9f872
Extract dask and spark test into distributed test. (#8395) 
- Move test files.
- Run spark and dask separately to prevent conflicts.
- Gather common code into the testing module.
 2022-10-28 16:24:32 +08:00
Jiaming Yuan
a2593e60bf
Speedup R test on github. (#8388) 2022-10-26 18:02:27 +08:00
Jiaming Yuan
cf70864fa3
Move Python testing utilities into xgboost module. (#8379) 
- Add typehints.
- Fixes for pylint.

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-26 16:56:11 +08:00
Christian Clauss
5761f27e5e
Use ==/!= to compare constant literals (str, bytes, int, float, tuple) (#8372) 2022-10-22 21:53:03 +08:00
Dmitry Razdoburdin
5bd849f1b5
Unify the partitioner for hist and approx. 
Co-authored-by: dmitry.razdoburdin <drazdobu@jfldaal005.jf.intel.com>
Co-authored-by: jiamingy <jm.yuan@outlook.com>
 2022-10-20 02:49:20 +08:00
Jiaming Yuan
c884b9e888
Validate features for inplace predict. (#8359) 2022-10-19 23:05:36 +08:00
Bobby Wang
76f95a6667
[pyspark] Filter out the unsupported train parameters (#8355) 2022-10-18 23:26:02 +08:00
Jiaming Yuan
3901f5d9db
[pyspark] Cleanup data processing. (#8344) 
* Enable additional combinations of ctor parameters.
* Unify procedures for QuantileDMatrix and DMatrix.
 2022-10-18 14:56:23 +08:00
Rong Ou
8f3dee58be
Speed up tests with federated learning enabled (#8350) 
* Speed up tests with federated learning enabled

* Re-enable timeouts

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-17 15:17:04 -07:00
Jiaming Yuan
031d66ec27
Configuration for init estimation. (#8343) 
* Configuration for init estimation.

* Check whether the model needs configuration based on const attribute `ModelFitted`
instead of a mutable state.
* Add parameter `boost_from_average` to tell whether the user has specified base score.
* Add tests.
 2022-10-18 01:52:24 +08:00
Jiaming Yuan
2176e511fc
Disable pytest-timeout for now. (#8348) 2022-10-17 23:06:10 +08:00
Jiaming Yuan
748d516c50
[pyspark] Enable running GPU tests on variable number of GPUs. (#8335) 2022-10-13 21:03:45 +08:00
Jiaming Yuan
3ef1703553
Allow using string view to find JSON value. (#8332) 
- Allow comparison between string and string view.
- Fix compiler warnings.
 2022-10-13 17:10:13 +08:00
Philip Hyunsu Cho
29595102b9
[CI] Set up test analytics for CPU Python tests (#8333) 
* [CI] Set up test analytics for CPU Python tests

* Install test collector
 2022-10-12 23:15:50 -07:00
Philip Hyunsu Cho
2faa744aba
[CI] Test federated learning plugin in the CI (#8325) 2022-10-12 13:57:39 -07:00
Jiaming Yuan
97a5b088a5
[pyspark] Use quantile dmatrix. (#8284) 2022-10-12 20:38:53 +08:00
Rory Mitchell
ce0382dcb0
[CI] Refactor tests to reduce CI time. (#8312) 2022-10-12 11:32:06 +02:00
Rong Ou
39afdac3be
Better error message when world size and rank are set as strings (#8316) 
Co-authored-by: jiamingy <jm.yuan@outlook.com>
 2022-10-12 15:53:25 +08:00
Rory Mitchell
210915c985
Use integer gradients in gpu_hist split evaluation (#8274) 2022-10-11 12:16:27 +02:00
Jiaming Yuan
5545c49cfc
Require keyword args for data iterator. (#8327) 2022-10-10 17:47:13 +08:00
Jiaming Yuan
e1f9f80df2
Use gpu predictor for get csr test. (#8323) 2022-10-10 16:12:37 +08:00
Philip Hyunsu Cho
50ff8a2623
More CI improvements (#8313) 
* Reduce clutter in log of Python test

* Set up BuildKite test analytics

* Add separate step for building containers

* Enable incremental update of CI stack; custom agent IAM policy
 2022-10-06 06:33:46 -08:00
Philip Hyunsu Cho
bc7a6ec603
Fix clang tidy (#8314) 
* Fix clang-tidy

* Exempt clang-tidy from budget check

* Move clang-tidy
 2022-10-06 05:16:06 -08:00
Rory Mitchell
909e49e214
Reduce docker image size. (#8306) 2022-10-05 15:55:51 -08:00
Rong Ou
668b8a0ea4
[Breaking] Switch from rabit to the collective communicator (#8257) 
* Switch from rabit to the collective communicator

* fix size_t specialization

* really fix size_t

* try again

* add include

* more include

* fix lint errors

* remove rabit includes

* fix pylint error

* return dict from communicator context

* fix communicator shutdown

* fix dask test

* reset communicator mocklist

* fix distributed tests

* do not save device communicator

* fix jvm gpu tests

* add python test for federated communicator

* Update gputreeshap submodule

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-05 14:39:01 -08:00
Jiaming Yuan
e47b3a3da3
Upgrade mypy. (#8302) 
Some breaking changes were made in mypy.
 2022-10-05 14:31:59 +08:00
Philip Hyunsu Cho
b2bbf49015
Additional improvements to CI (#8303) 
* Wait until budget check is complete

* Ensure that multi-GPU tests run for the master branch

* Fix
 2022-10-04 03:03:38 -08:00
Rory Mitchell
d686bf52a6
Reduce time for some multi-gpu tests (#8288) 
* Faster dask tests

* Reuse AllReducer objects in tests.

* Faster boost from prediction tests.

* Use rmm dask fixture.

* Speed up dask demo.

* mypy

* Format with black.

* mypy

* Clang-tidy

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-10-04 02:49:33 -08:00
Philip Hyunsu Cho
ca0547bb65
[CI] Use RAPIDS 22.10 (#8298) 
* [CI] Use RAPIDS 22.10

* Store CUDA and RAPIDS versions in one place

* Fix

* Add missing #include

* Update gputreeshap submodule

* Fix

* Remove outdated distributed tests
 2022-10-03 23:18:07 -08:00
Philip Hyunsu Cho
37886a5dff
[CI] Document the use of Docker wrapper script (#8297) 
* [CI] Document the use of Docker wrapper script

* Grammer fixes

* Document buildkite pipeline defs

* tests/buildkite/*.sh isn't meant to run locally
 2022-10-02 12:45:00 -07:00
Philip Hyunsu Cho
9af99760d4
Various CI savings (#8291) 2022-09-30 05:42:56 -07:00
Jiaming Yuan
299e5000a4
Fix buildkite label. (#8287) 2022-09-29 17:33:19 -07:00
Jiaming Yuan
55cf24cc32
Obtain CSR matrix from DMatrix. (#8269) 2022-09-29 20:41:43 +08:00
Philip Hyunsu Cho
b14c44ee5e
[CI] Put Multi-GPU test suites in separate pipeline (#8286) 
* [CI] Put Multi-GPU test suites in separate pipeline

* Avoid unset var error in Bash
 2022-09-29 00:41:48 -08:00
Jiaming Yuan
6925b222e0
Fix mixed types with cuDF. (#8280) 2022-09-29 00:57:52 +08:00
Jiaming Yuan
6d1452074a
Remove MGPU cpp tests. (#8276) 
Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-09-27 21:18:23 +08:00
Jiaming Yuan
fcab51aa82
Support more pandas nullable types (#8262) 
- Float32/64
- Category.
 2022-09-27 01:59:50 +08:00
Rory Mitchell
8f77677193
Use quantised gradients in gpu_hist histograms (#8246) 2022-09-26 17:35:35 +02:00
WeichenXu
ff71c69adf
[pyspark] Add validation for param 'early_stopping_rounds' and 'validation_indicator_col' (#8250) 
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
 2022-09-26 17:43:03 +08:00
Jiaming Yuan
3fd331f8f2
Add checks to C pointer arguments. (#8254) 2022-09-22 19:02:22 +08:00
Dmitry Razdoburdin
eb7bbee2c9
Optional by-column histogram build. (#8233) 
Co-authored-by: dmitry.razdoburdin <drazdobu@jfldaal005.jf.intel.com>
 2022-09-22 05:16:13 +08:00