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1619 Commits

Author SHA1 Message Date
Jiaming Yuan
e1a2c1bbb3
[EM] Merge GPU partitioning with histogram building. (#10766) 
- Stop concatenating pages if there's no subsampling.
- Use a single iteration for histogram build and partitioning.
 2024-08-31 03:25:37 +08:00
Jiaming Yuan
98ac153265
Avoid warning from NVCC. (#10757) 2024-08-30 16:11:31 +08:00
Jiaming Yuan
34d4ab455e
[EM] Avoid stream sync in quantile sketching. (#10765) 
.
 2024-08-30 12:33:24 +08:00
Jiaming Yuan
61dd854a52
[EM] Refactor GPU histogram builder. (#10764) 
- Expose the maximum number of cached nodes to be consistent with the CPU implementation. Also easier for testing.
- Extract the subtraction trick for easier testing.
- Split up the `GradientQuantiser` to avoid circular dependency.
 2024-08-30 02:39:14 +08:00
Jiaming Yuan
34937fea41
[EM] Python wrapper for the ExtMemQuantileDMatrix. (#10762) 
Not exposed to the document yet.

- Add C API.
- Add Python API.
- Basic CPU tests.
 2024-08-29 04:08:25 +08:00
Jiaming Yuan
4fe67f10b4
[EM] Have one partitioner for each batch. (#10760) 
- Initialize one partitioner for each batch.
- Collect partition size during initialization.
- Support base ridx in the finalization.
 2024-08-29 01:35:17 +08:00
Philip Hyunsu Cho
7794d3da8a
Ensure that pip check does not fail due to bad platform tag (#10755) 
* Remove custom tag generation

* Revert "Remove custom tag generation"

This reverts commit fe3cf0e8786c7dc05e1deced3a1c92cd79094735.

* Fetch an accurate platform tag from Pip 22+

* Fix formatting

* TOML allows trailing commas

* Update patch

* Add trailing comma

* Fix up patch

* Use `packaging`

Co-authored-by: jakirkham <jakirkham@gmail.com>

---------

Co-authored-by: jakirkham <jakirkham@gmail.com>
 2024-08-27 18:11:08 -07:00
Jiaming Yuan
64afe9873b
Increase timeout in C++ tests from 1 to 5 seconds. (#10756) 
To avoid CI failures on FreeBSD.
 2024-08-28 02:27:14 +08:00
Jiaming Yuan
bde1265caf
[EM] Return a full DMatrix instead of a Ellpack from the GPU sampler. (#10753) 2024-08-28 01:05:11 +08:00
Jiaming Yuan
d6ebcfb032
[EM] Support CPU quantile objective for external memory. (#10751) 2024-08-27 04:16:57 +08:00
david-cortes
12c6b7ceea
[R] Remove demos (#10750) 2024-08-27 04:16:36 +08:00
Jiaming Yuan
06c4246ff1
[CI] Workaround mypy errors. (#10754) 2024-08-27 02:54:11 +08:00
Jiaming Yuan
25966e4ba8
[EM] Pass batch parameter into extmem format. (#10736) 
- Allow customization for format reading.
- Customize the number of pre-fetch batches.
 2024-08-27 02:37:50 +08:00
Jiaming Yuan
fd0138c91c
[coll] Improve column split tests with named threads. (#10735) 2024-08-24 12:43:47 +08:00
Jiaming Yuan
55aef8f546
[EM] Avoid resizing host cache. (#10734) 
* [EM] Avoid resizing host cache.

- Add SAM allocator and resource.
- Use page-based cache instead of stream-based cache.
 2024-08-23 06:34:01 +08:00
Philip Hyunsu Cho
cd83fe6033
[breaking][CI] Use CTK 12.4 (#10697) 2024-08-21 19:59:34 -07:00
Jiaming Yuan
142bdc73ec
[EM] Support SHAP contribution with QDM. (#10724) 
- Add GPU support.
- Add external memory support.
- Update the GPU tree shap.
 2024-08-22 05:25:10 +08:00
Jiaming Yuan
cb54374550
Update clang-tidy. (#10730) 
- Install cmake using pip.
- Fix compile command generation.
- Clean up the tidy script and remove the need to load the yaml file.
- Fix modernized type traits.
- Fix span class. Polymorphism support is dropped
 2024-08-22 04:12:18 +08:00
Dmitry Razdoburdin
24d225c1ab
[SYCL] Implement UpdatePredictionCache and connect updater with leraner. (#10701) 
---------

Co-authored-by: Dmitry Razdoburdin <>
 2024-08-22 02:07:44 +08:00
Jiaming Yuan
9b88495840
[multi] Implement weight feature importance. (#10700) 2024-08-22 02:06:47 +08:00
Jiaming Yuan
402e7837fb
Fix potential race in feature constraint. (#10719) 2024-08-21 16:50:31 +08:00
Jiaming Yuan
508ac13243
Check cub errors. (#10721) 
- Make sure cuda error returned by cub scan is caught.
- Avoid temporary buffer allocation in thrust device vector.
 2024-08-21 02:50:26 +08:00
Jiaming Yuan
ec3f327c20
Add managed memory allocator. (#10711) 2024-08-17 03:02:34 +08:00
Jiaming Yuan
8d7fe262d9
[EM] Enable access to the number of batches. (#10691) 
- Expose `NumBatches` in `DMatrix`.
- Small cleanup for removing legacy CUDA stream and ~force CUDA context initialization~.
- Purge old external memory data generation code.
 2024-08-17 02:59:45 +08:00
Jiaming Yuan
abe65e3769
Reduce thread contention in column split histogram test. (#10708) 2024-08-17 01:00:32 +08:00
Jiaming Yuan
2258bc870d
Add more tests and doc for QDM. (#10692) 2024-08-16 23:30:04 +08:00
Jiaming Yuan
582ea104b5
[EM] Enable prediction cache for GPU. (#10707) 
- Use `UpdatePosition` for all nodes and skip `FinalizePosition` when external memory is used.
- Create `encode/decode` for node position, this is just as a refactor.
- Reuse code between update position and finalization.
 2024-08-15 21:41:59 +08:00
Dmitry Razdoburdin
773ded684b
[sycl] Add depth-wise policy (#10690) 
Co-authored-by: Dmitry Razdoburdin <>
 2024-08-13 18:12:35 +08:00
Jiaming Yuan
2ecc85ffad
[EM] Support ExtMemQdm in the GPU predictor. (#10694) 2024-08-13 12:21:11 +08:00
Jiaming Yuan
43704549a2
[coll] Reduce the amount of open files (socket). (#10693) 
Reduce the chance of hitting `Failed to call `socket`: Too many open files`.
 2024-08-13 05:23:49 +08:00
Jiaming Yuan
d414fdf2e7
[EM] Add GPU version of the external memory QDM. (#10689) 2024-08-10 10:49:43 +08:00
James Lamb
18b28d9315
[R] prefer startsWith to substr() or regular expressions (#10687) 2024-08-09 21:18:46 +08:00
James Lamb
fb9201abae
[CI] use key=value form for Dockerfile ENV statements (#10685) 2024-08-09 21:12:50 +08:00
Jiaming Yuan
7bccc1ea2c
[EM] CPU implementation for external memory QDM. (#10682) 
- A new DMatrix type.
- Extract common code into a new QDM base class.

Not yet working:
- Not exposed to the interface yet, will wait for the GPU implementation.
- ~No meta info yet, still working on the source.~
- Exporting data to CSR is not supported yet.
 2024-08-09 09:38:02 +08:00
Dmitry Razdoburdin
e555a238bc
[SYCL]. Add implementation for loss-guided policy (#10681) 
---------

Co-authored-by: Dmitry Razdoburdin <>
 2024-08-09 09:04:46 +08:00
Jiaming Yuan
cc3b56fc37
Cleanup GPU Hist tests. (#10677) 
* Cleanup GPU Hist tests.

- Remove GPU Hist gradient sampling test. The same properties are tested in the gradient
  sampler test suite.
- Move basic histogram tests into the histogram test suite.
- Remove the header inclusion of the `updater_gpu_hist.cu` in tests.
 2024-08-06 11:50:44 +08:00
Jiaming Yuan
6ccf116601
[dask] Reduce the flakiness of tests. (#10678) 2024-08-06 06:04:10 +08:00
Jiaming Yuan
3d8107adb8
Support doc link for the sklearn module. (#10287) 2024-08-06 02:35:32 +08:00
Jiaming Yuan
a269055b2b
[coll] Use loky for tests. (#10676) 
This makes the tests easier to run and debug. In addition, they can now work on Windows as
well.
 2024-08-03 07:33:42 +08:00
Jiaming Yuan
a185b693dc
Reduce warnings and flakiness in tests. (#10659) 
- Fix warnings in tests.
- Try to reduce the flakiness of dask test.
 2024-08-03 07:32:47 +08:00
Jiaming Yuan
2e7ba900ef
[CI] Add timeout limit to JVM tests. (#10673) 2024-08-03 01:51:13 +08:00
Jiaming Yuan
574c20dc1d
Enable CI build for the federated-secure branch. (#10671) 2024-08-02 22:13:17 +08:00
Jiaming Yuan
77c844cef7
Reduce thread contention in column split tests. (#10658) 
---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-08-01 18:36:46 +08:00
Philip Hyunsu Cho
778751a1bb
Update the release script to download xgboost-cpu (#10657) 
* Update the release script to download xgboost-cpu

* Exclude mypy 1.11.1; un-cap pylint

* Exclude mypy 1.11.0 too
 2024-07-31 14:43:10 -07:00
Jiaming Yuan
fb77ed7603
[CI] Fix Python wheel workflow. (#10649) 
* [CI] Fix Python wheel workflow.

* Use Python 3.10 for building wheels

---------

Co-authored-by: Hyunsu Cho <phcho@nvidia.com>
 2024-07-30 10:13:47 -07:00
Jiaming Yuan
827d0e8edb
[breaking] Bump Python requirement to 3.10. (#10434) 
- Bump the Python requirement.
- Fix type hints.
- Use loky to avoid deadlock.
- Workaround cupy-numpy compatibility issue on Windows caused by the `safe` casting rule.
- Simplify the repartitioning logic to avoid dask errors.
 2024-07-30 17:31:06 +08:00
Dmitry Razdoburdin
7720272870
[sycl] add split applications and tests (#10636) 
Co-authored-by: Dmitry Razdoburdin <>
 2024-07-26 15:25:49 +08:00
Philip Hyunsu Cho
411c8466bd
[CMake] Explicitly link with CCCL (standalone or CTK) (#10624) 2024-07-23 18:42:54 -07:00
Jiaming Yuan
a19bbc9be5
Avoid caching allocator for large allocations. (#10582) 2024-07-23 03:48:03 +08:00
Dmitry Razdoburdin
f6cae4da85
[SYCL] Add splits evaluation (#10605) 
---------

Co-authored-by: Dmitry Razdoburdin <>
 2024-07-22 18:14:06 +08:00