290 Commits

Author SHA1 Message Date
Jiaming Yuan
1094d6015d
[py] Use the first found native library. (#9860) 2023-12-08 17:23:16 +08:00
Jiaming Yuan
39c637ee19
Use array interface in Python prediction return. (#9855) 2023-12-08 03:42:14 +08:00
Jiaming Yuan
0715ab3c10
Use dlopen to load NCCL. (#9796)
This PR adds optional support for loading nccl with `dlopen` as an alternative of compile time linking. This is to address the size bloat issue with the PyPI binary release.
- Add CMake option to load `nccl` at runtime.
- Add an NCCL stub.

After this, `nccl` will be fetched from PyPI when using pip to install XGBoost, either by a user or by `pyproject.toml`. Others who want to link the nccl at compile time can continue to do so without any change.

At the moment, this is Linux only since we only support MNMG on Linux.
2023-11-22 19:27:31 +08:00
Rong Ou
da6803b75b
Support column-wise data split with in-memory inputs (#9628)
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2023-10-17 12:16:39 +08:00
Jiaming Yuan
60526100e3
Support arrow through pandas ext types. (#9612)
- Use pandas extension type for pyarrow support.
- Additional support for QDM.
- Additional support for inplace_predict.
2023-09-28 17:00:16 +08:00
Jiaming Yuan
a90d204942
Use array interface for testing numpy arrays. (#9602) 2023-09-23 03:13:48 +08:00
Jiaming Yuan
972730cde0
Use matrix for gradient. (#9508)
- Use the `linalg::Matrix` for storing gradients.
- New API for the custom objective.
- Custom objective for multi-class/multi-target is now required to return the correct shape.
- Custom objective for Python can accept arrays with any strides. (row-major, column-major)
2023-08-24 05:29:52 +08:00
Jiaming Yuan
044fea1281
Drop support for loading remote files. (#9504) 2023-08-21 23:34:05 +08:00
Jiaming Yuan
5188e27513
Fix version parsing with rc release. (#9493) 2023-08-16 22:44:58 +08:00
Jiaming Yuan
f05a23b41c
Use weakref instead of id for DataIter cache. (#9445)
- Fix case where Python reuses id from freed objects.
- Small optimization to column matrix with QDM by using `realloc` instead of copying data.
2023-08-10 00:40:06 +08:00
Jiaming Yuan
7129988847
Accept only keyword arguments in data iterator. (#9431) 2023-08-03 12:44:16 +08:00
Jiaming Yuan
851cba931e
Define best_iteration only if early stopping is used. (#9403)
* Define `best_iteration` only if early stopping is used.

This is the behavior specified by the document but not honored in the actual code.

- Don't set the attributes if there's no early stopping.
- Clean up the code for callbacks, and replace assertions with proper exceptions.
- Assign the attributes when early stopping `save_best` is used.
- Turn the attributes into Python properties.

---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2023-07-24 12:43:35 +08:00
Jiaming Yuan
01e00efc53
[breaking] Remove support for single string feature info. (#9401)
- Input must be a sequence of strings.
- Improve validation error message.
2023-07-24 11:06:30 +08:00
Jiaming Yuan
6e18d3a290
[pyspark] Handle the device parameter in pyspark. (#9390)
- Handle the new `device` parameter in PySpark.
- Deprecate the old `use_gpu` parameter.
2023-07-18 08:47:03 +08:00
Jiaming Yuan
b342ef951b
Make feature validation immutable. (#9388) 2023-07-16 06:52:55 +08:00
Jiaming Yuan
16eb41936d
Handle the new device parameter in dask and demos. (#9386)
* Handle the new `device` parameter in dask and demos.

- Check no ordinal is specified in the dask interface.
- Update demos.
- Update dask doc.
- Update the condition for QDM.
2023-07-15 19:11:20 +08:00
Jiaming Yuan
9da5050643
Turn warning messages into Python warnings. (#9387) 2023-07-15 07:46:43 +08:00
Jiaming Yuan
04aff3af8e
Define the new device parameter. (#9362) 2023-07-13 19:30:25 +08:00
Jiaming Yuan
20c52f07d2
Support exporting cut values (#9356) 2023-07-08 15:32:41 +08:00
Jiaming Yuan
39390cc2ee
[breaking] Remove the predictor param, allow fallback to prediction using DMatrix. (#9129)
- A `DeviceOrd` struct is implemented to indicate the device. It will eventually replace the `gpu_id` parameter.
- The `predictor` parameter is removed.
- Fallback to `DMatrix` when `inplace_predict` is not available.
- The heuristic for choosing a predictor is only used during training.
2023-07-03 19:23:54 +08:00
michael-gendy-mention-me
c5677a2b2c
Remove type: ignore hints (#9197) 2023-05-27 07:48:28 +08:00
Jiaming Yuan
720a8c3273
[doc] Remove parameter type in Python doc strings. (#9005) 2023-04-01 04:04:30 +08:00
Jiaming Yuan
bac22734fb
Remove ntree limit in python package. (#8345)
- Remove `ntree_limit`. The parameter has been deprecated since 1.4.0.
- The SHAP package compatibility is broken.
2023-03-31 19:01:55 +08:00
Jiaming Yuan
acc110c251
[MT-TREE] Support prediction cache and model slicing. (#8968)
- Fix prediction range.
- Support prediction cache in mt-hist.
- Support model slicing.
- Make the booster a Python iterable by defining `__iter__`.
- Cleanup removed/deprecated parameters.
- A new field in the output model `iteration_indptr` for pointing to the ranges of trees for each iteration.
2023-03-27 23:10:54 +08:00
Jiaming Yuan
c2b3a13e70
[breaking][skl] Remove parameter serialization. (#8963)
- Remove parameter serialization in the scikit-learn interface.

The scikit-lear interface `save_model` will save only the model and discard all
hyper-parameters. This is to align with the native XGBoost interface, which distinguishes
the hyper-parameter and model parameters.

With the scikit-learn interface, model parameters are attributes of the estimator. For
instance, `n_features_in_`, `n_classes_` are always accessible with
`estimator.n_features_in_` and `estimator.n_classes_`, but not with the
`estimator.get_params`.

- Define a `load_model` method for classifier to load its own attributes.

- Set n_estimators to None by default.
2023-03-27 21:34:10 +08:00
Jiaming Yuan
7eba285a1e
Support sklearn cross validation for ranker. (#8859)
* Support sklearn cross validation for ranker.

- Add a convention for X to include a special `qid` column.

sklearn utilities consider only `X`, `y` and `sample_weight` for supervised learning
algorithms, but we need an additional qid array for ranking.

It's important to be able to support the cross validation function in sklearn since all
other tuning functions like grid search are based on cross validation.
2023-03-07 00:22:08 +08:00
Jiaming Yuan
cce4af4acf
Initial support for quantile loss. (#8750)
- Add support for Python.
- Add objective.
2023-02-16 02:30:18 +08:00
Jiaming Yuan
c4802bfcd0
Cleanup booster param types. (#8756) 2023-02-07 15:52:19 +08:00
Jiaming Yuan
0f37a01dd9
Require black formatter for the python package. (#8748) 2023-02-07 01:53:33 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672)
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
2023-02-05 01:59:46 +08:00
Jiaming Yuan
31b9cbab3d
Make sure input numpy array is aligned. (#8690)
- use `np.require` to specify that the alignment is required.
- scipy csr as well.
- validate input pointer in `ArrayInterface`.
2023-01-18 08:12:13 +08:00
Jiaming Yuan
247946a875
Cache transformed in QuantileDMatrix for efficiency. (#8666) 2023-01-17 06:02:40 +08:00
Jiaming Yuan
1b58d81315
[doc] Document Python inputs. (#8643) 2023-01-10 15:39:32 +08:00
Rong Ou
3ceeb8c61c
Add data split mode to DMatrix MetaInfo (#8568) 2022-12-25 20:37:37 +08:00
Jiaming Yuan
f6effa1734
Support Series and Python primitives in inplace_predict and QDM (#8547) 2022-12-17 00:15:15 +08:00
Jiaming Yuan
001e663d42
Set enable_categorical to True in predict. (#8592) 2022-12-15 05:27:06 +08:00
James Lamb
06ea6c7e79
[python] remove unnecessary conversions between data structures (#8546)
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2022-12-14 18:32:02 +08:00
Jiaming Yuan
d666ba775e
Support all pandas nullable integer types. (#8480)
- Enumerate all pandas integer types.
- Tests for `None`, `nan`, and `pd.NA`
2022-11-28 22:38:16 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
Yizhi Liu
5699f60a88
Type fix for WebAssembly: use bst_ulong instead of size_t for ncol in CSR conversion. (#8369) 2022-10-26 19:21:45 +08:00
Jiaming Yuan
c884b9e888
Validate features for inplace predict. (#8359) 2022-10-19 23:05:36 +08:00
Jiaming Yuan
fcddbc9264
FIx incorrect function name. (#8346) 2022-10-17 19:28:20 +08:00
Jiaming Yuan
97a5b088a5
[pyspark] Use quantile dmatrix. (#8284) 2022-10-12 20:38:53 +08:00
Jiaming Yuan
5545c49cfc
Require keyword args for data iterator. (#8327) 2022-10-10 17:47:13 +08:00
Jiaming Yuan
e47b3a3da3
Upgrade mypy. (#8302)
Some breaking changes were made in mypy.
2022-10-05 14:31:59 +08:00
Jiaming Yuan
97c3a80a34
Add C document to sphinx, fix arrow. (#8300)
- Group C API.
- Add C API sphinx doc.
- Consistent use of `OptionalArg` and the parameter name `config`.
- Remove call to deprecated functions in demo.
- Fix some formatting errors.
- Add links to c examples in the document (only visible with doxygen pages)
- Fix arrow.
2022-10-05 09:52:15 +08:00
Jiaming Yuan
55cf24cc32
Obtain CSR matrix from DMatrix. (#8269) 2022-09-29 20:41:43 +08:00
Jiaming Yuan
6925b222e0
Fix mixed types with cuDF. (#8280) 2022-09-29 00:57:52 +08:00
Jiaming Yuan
f835368bcf
Mark next release as 1.7 instead of 2.0 (#8281) 2022-09-28 14:33:37 +08:00
Jiaming Yuan
570f8ae4ba
Use black on more Python files. (#8137) 2022-08-11 01:38:11 +08:00