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Author SHA1 Message Date
Nan Zhu
00774eeac3
[jvm-packages] update version number for 1.2 branch (#6427) 
* [jvm-packages]update version number of 1.2 branch

* update ver
 2020-11-23 14:16:30 -08:00
Philip Hyunsu Cho
bcb15a980f
1.2.1 patch release (#6206) 
* Hide C++ symbols from dmlc-core (#6188)

* Up version to 1.2.1

* Fix lint

* [CI] Fix Docker build for CUDA 11 (#6202)

* Update Dockerfile.gpu
v1.2.1 		2020-10-12 15:10:16 -07:00
Tong He
0cd0dad0b5
Fix CRAN submission (#6076) 2020-09-01 23:38:27 -07:00
Philip Hyunsu Cho
884098ec22
[CI] Fix CRAN check (#6067) 2020-08-28 21:24:49 +08:00
Hyunsu Cho
738786680b Release 1.2.0 v1.2.0 2020-08-22 18:25:18 -07:00
Philip Hyunsu Cho
04232c01b2
[CI] Fix broken tests (#6048) 2020-08-22 11:43:38 -07:00
Jiaming Yuan
0353a78ab7 Fix scikit learn cls doc. (#6041) 2020-08-20 19:25:12 -07:00
Hyunsu Cho
0089a0e6bf Fix another typo v1.2.0rc2 2020-08-12 19:29:08 +00:00
Philip Hyunsu Cho
03a68a1714
Fix typo 2020-08-12 01:34:33 -07:00
Hyunsu Cho
a0da8a7e0a Make RC2 2020-08-12 00:50:51 -07:00
Hyunsu Cho
eee4eff49b [CI] Build GPU-enabled JAR artifact and deploy to xgboost-maven-repo 2020-08-12 00:50:47 -07:00
Jiaming Yuan
936a854baa
Back port fixes to 1.2 (#6002) 
* Fix sklearn doc. (#5980)

* Enforce tree order in JSON. (#5974)

* Make JSON model IO more future proof by using tree id in model loading.

* Fix dask predict shape infer. (#5989)

* [Breaking] Fix .predict() method and add .predict_proba() in xgboost.dask.DaskXGBClassifier (#5986)
 2020-08-11 20:22:31 +08:00
Hyunsu Cho
7856da5827 [CI] Use mgpu machine to run gpu hist unit tests v1.2.0rc1 2020-08-02 02:33:05 -07:00
Hyunsu Cho
50a0def6c3 Make RC1 2020-08-02 08:56:20 +00:00
Hyunsu Cho
9116a0ec10 Fix a unit test on CLI, to handle RC versions 2020-08-02 08:56:15 +00:00
Shaochen Shi
71197d1dfa
[jvm-packages] Fix wrong method name setAllowZeroForMissingValue. (#5740) 
* Allow non-zero for missing value when training.

* Fix wrong method names.

* Add a unit test

* Move the getter/setter unit test to MissingValueHandlingSuite

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-08-01 17:16:42 -07:00
Philip Hyunsu Cho
5a2dcd1c33
[R] Provide better guidance for persisting XGBoost model (#5964) 
* [R] Provide better guidance for persisting XGBoost model

* Update saving_model.rst

* Add a paragraph about xgb.serialize()
 2020-07-31 20:00:26 -07:00
Philip Hyunsu Cho
bf2990e773
Add missing Pytest marks to AsyncIO unit test (#5968) 2020-08-01 10:56:24 +08:00
Philip Hyunsu Cho
5f3c811e84
[CI] Assign larger /dev/shm to NCCL (#5966) 
* [CI] Assign larger /dev/shm to NCCL

* Use 10.2 artifact to run multi-GPU Python tests

* Add CUDA 10.0 -> 11.0 cross-version test; remove CUDA 10.0 target
 2020-07-31 10:05:04 -07:00
Philip Hyunsu Cho
3fcfaad577
Add CMake flag to log C API invocations, to aid debugging (#5925) 
* Add CMake flag to log C API invocations, to aid debugging

* Remove unnecessary parentheses
 2020-07-30 19:24:28 -07:00
James Bourbeau
3b88bc948f
Update XGBoost + Dask overview documentation (#5961) 
* Add imports to code snippet

* Better writing.
 2020-07-31 09:58:50 +08:00
Jiaming Yuan
70903c872f
Force colored output for ninja build. (#5959) 2020-07-30 20:48:03 +08:00
boxdot
d268a2a463
Thread-safe prediction by making the prediction cache thread-local. (#5853) 
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2020-07-30 12:33:50 +08:00
Jiaming Yuan
fa3715f584
[Dask] Asyncio support. (#5862) 2020-07-30 06:23:58 +08:00
Jiaming Yuan
e4a273e1da
Fix evaluate root split. (#5948) 2020-07-29 19:33:29 +08:00
Philip Hyunsu Cho
071e10c1d1
[CI] Fix broken Docker container 'cpu' (#5956) 2020-07-29 04:29:57 -07:00
Jiaming Yuan
f5fdcbe194
Disable feature validation on sklearn predict prob. (#5953) 
* Fix issue when scikit learn interface receives transformed inputs.
 2020-07-29 19:26:44 +08:00
Jiaming Yuan
18349a7ccf
[Breaking] Fix custom metric for multi output. (#5954) 
* Set output margin to true for custom metric.  This fixes only R and Python.
 2020-07-29 19:25:27 +08:00
Jiaming Yuan
75b8c22b0b
Fix prediction heuristic (#5955) 
* Relax check for prediction.
* Relax test in spark test.
* Add tests in C++.
 2020-07-29 19:24:07 +08:00
Philip Hyunsu Cho
5879acde9a
[CI] Improve R linter script (#5944) 
* [CI] Move lint to a separate script

* [CI] Improved lintr launcher

* Add lintr as a separate action

* Add custom parsing logic to print out logs

* Fix lintr issues in demos

* Run R demos

* Fix CRAN checks

* Install XGBoost into R env before running lintr

* Install devtools (needed to run demos)
 2020-07-27 00:55:35 -07:00
Bobby Wang
8943eb4314
[BLOCKING] [jvm-packages] add gpu_hist and enable gpu scheduling (#5171) 
* [jvm-packages] add gpu_hist tree method

* change updater hist to grow_quantile_histmaker

* add gpu scheduling

* pass correct parameters to xgboost library

* remove debug info

* add use.cuda for pom

* add CI for gpu_hist for jvm

* add gpu unit tests

* use gpu node to build jvm

* use nvidia-docker

* Add CLI interface to create_jni.py using argparse

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-07-26 21:53:24 -07:00
Philip Hyunsu Cho
6347fa1c2e
[R] Enable weighted learning to rank (#5945) 
* [R] enable weighted learning to rank

* Add R unit test for ranking

* Fix lint
 2020-07-26 21:10:36 -07:00
Philip Hyunsu Cho
ace7fd328b
[R] Add a compatibility layer to load Booster object from an old RDS file (#5940) 
* [R] Add a compatibility layer to load Booster from an old RDS
* Modify QuantileHistMaker::LoadConfig() to be backward compatible with 1.1.x
* Add a big warning about compatibility in QuantileHistMaker::LoadConfig()
* Add testing suite
* Discourage use of saveRDS() in CRAN doc
 2020-07-26 00:06:49 -07:00
Jiaming Yuan
40361043ae
[BLOCKING] Remove to_string. (#5934) 2020-07-26 10:21:26 +08:00
Philip Hyunsu Cho
12110c900e
[CI] Make Python model compatibility test runnable locally (#5941) 2020-07-25 16:58:02 -07:00
Philip Hyunsu Cho
487ab0ce73
[BLOCKING] Handle empty rows in data iterators correctly (#5929) 
* [jvm-packages] Handle empty rows in data iterators correctly

* Fix clang-tidy error

* last empty row

* Add comments [skip ci]

Co-authored-by: Nan Zhu <nanzhu@uber.com>
 2020-07-25 13:46:19 -07:00
Jiaming Yuan
a4de2f68e4
Use cudaOccupancyMaxPotentialBlockSize to calculate the block size. (#5926) 2020-07-23 14:24:42 +08:00
Jiaming Yuan
fbfbd525d8
Cache dependencies on Github Action. (#5928) 2020-07-23 14:00:19 +08:00
Philip Hyunsu Cho
4af857f95d
Add explicit template specialization for portability (#5921) 
* Add explicit template specializations

* Adding Specialization for FileAdapterBatch
 2020-07-22 12:31:17 -07:00
Jiaming Yuan
bc1d3ee230
Fix r early stop with custom objective. (#5923) 
* Specify `ntreelimit`.
 2020-07-23 03:28:17 +08:00
Jiaming Yuan
30363d9c35
Remove R and JVM from appveyor. (#5922) 2020-07-23 03:26:48 +08:00
Jiaming Yuan
66cc1e02aa
Setup github action. (#5917) 2020-07-22 15:05:25 +08:00
Philip Hyunsu Cho
627cf41a60
Add option to enable all compiler warnings in GCC/Clang (#5897) 
* Add option to enable all compiler warnings in GCC/Clang

* Fix -Wall for CUDA sources

* Make -Wall private req for xgboost-r
 2020-07-21 23:34:03 -07:00
Jiaming Yuan
9b688aca3b
Fix mingw build with R. (#5918) 2020-07-22 02:56:49 +08:00
Philip Hyunsu Cho
8d7702766a
[Doc] Document new objectives and metrics available on GPUs (#5909) 2020-07-21 02:10:59 -07:00
Jiaming Yuan
03fb98fbde
Fix typo in CI. [skip ci] (#5919) 2020-07-21 14:25:27 +08:00
Jiaming Yuan
8b1afce316
Add Github Action for R. (#5911) 
* Fix lintr errors.
 2020-07-20 19:23:36 +08:00
Andy Adinets
b3d2e7644a
Support building XGBoost with CUDA 11 (#5808) 
* Change serialization test.
* Add CUDA 11 tests on Linux CI.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-07-20 07:58:41 +08:00
Philip Hyunsu Cho
ac9136ee49
Further improvements and savings in Jenkins pipeline (#5904) 
* Publish artifacts only on the master and release branches

* Build CUDA only for Compute Capability 7.5 when building PRs

* Run all Windows jobs in a single worker image

* Build nightly XGBoost4J SNAPSHOT JARs with Scala 2.12 only

* Show skipped Python tests on Windows

* Make Graphviz optional for Python tests

* Add back C++ tests

* Unstash xgboost_cpp_tests

* Fix label to CUDA 10.1

* Install cuPy for CUDA 10.1

* Install jsonschema

* Address reviewer's feedback
 2020-07-18 03:30:40 -07:00
Jiaming Yuan
6c0c87216f
Fix Windows 2016 build. (#5902) 2020-07-18 05:50:17 +08:00