xgboost/tests/python/test_with_sklearn.py
terrytangyuan 7d297b418f Added more thorough test for early stopping (+1 squashed commit)
Squashed commits:
[4f78cc0] Added test for early stopping (+1 squashed commit)
2015-11-02 20:37:27 -06:00

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Python

import xgboost as xgb
import numpy as np
from sklearn.cross_validation import KFold, train_test_split
from sklearn.metrics import mean_squared_error
from sklearn.grid_search import GridSearchCV
from sklearn.datasets import load_iris, load_digits, load_boston
rng = np.random.RandomState(1994)
def test_binary_classification():
digits = load_digits(2)
y = digits['target']
X = digits['data']
kf = KFold(y.shape[0], n_folds=2, shuffle=True, random_state=rng)
for train_index, test_index in kf:
xgb_model = xgb.XGBClassifier().fit(X[train_index],y[train_index])
preds = xgb_model.predict(X[test_index])
labels = y[test_index]
err = sum(1 for i in range(len(preds)) if int(preds[i]>0.5)!=labels[i]) / float(len(preds))
assert err < 0.1
def test_multiclass_classification():
iris = load_iris()
y = iris['target']
X = iris['data']
kf = KFold(y.shape[0], n_folds=2, shuffle=True, random_state=rng)
for train_index, test_index in kf:
xgb_model = xgb.XGBClassifier().fit(X[train_index],y[train_index])
preds = xgb_model.predict(X[test_index])
# test other params in XGBClassifier().fit
preds2 = xgb_model.predict(X[test_index], output_margin=True, ntree_limit=3)
preds3 = xgb_model.predict(X[test_index], output_margin=True, ntree_limit=0)
preds4 = xgb_model.predict(X[test_index], output_margin=False, ntree_limit=3)
labels = y[test_index]
err = sum(1 for i in range(len(preds)) if int(preds[i]>0.5)!=labels[i]) / float(len(preds))
assert err < 0.4
def test_boston_housing_regression():
boston = load_boston()
y = boston['target']
X = boston['data']
kf = KFold(y.shape[0], n_folds=2, shuffle=True, random_state=rng)
for train_index, test_index in kf:
xgb_model = xgb.XGBRegressor().fit(X[train_index],y[train_index])
preds = xgb_model.predict(X[test_index])
# test other params in XGBRegressor().fit
preds2 = xgb_model.predict(X[test_index], output_margin=True, ntree_limit=3)
preds3 = xgb_model.predict(X[test_index], output_margin=True, ntree_limit=0)
preds4 = xgb_model.predict(X[test_index], output_margin=False, ntree_limit=3)
labels = y[test_index]
assert mean_squared_error(preds, labels) < 25
def test_parameter_tuning():
boston = load_boston()
y = boston['target']
X = boston['data']
xgb_model = xgb.XGBRegressor()
clf = GridSearchCV(xgb_model,
{'max_depth': [2,4,6],
'n_estimators': [50,100,200]}, verbose=1)
clf.fit(X,y)
assert clf.best_score_ < 0.7
assert clf.best_params_ == {'n_estimators': 100, 'max_depth': 4}