[jvm-packages] update version of 1.1.0 branch (#6435)

* [CI] Throttle Jenkins CI

* Don't use Jenkins master instance

Jenkinsfile

@@ -31,13 +31,14 @@ pipeline {
 
   // Build stages
   stages {
-    stage('Jenkins Linux: Get sources') {
-      agent { label 'linux && cpu' }
+    stage('Jenkins Linux: Initialize') {
+      agent { label 'job_initializer' }
       steps {
         script {
           checkoutSrcs()
           commit_id = "${GIT_COMMIT}"
         }
+        sh 'python3 tests/jenkins_get_approval.py'
         stash name: 'srcs'
         milestone ordinal: 1
       }
@@ -324,25 +325,12 @@ def TestPythonGPU(args) {
       sh """
       ${dockerRun} ${container_type} ${docker_binary} ${docker_args} tests/ci_build/test_python.sh mgpu
       """
-      if (args.cuda_version != '9.0') {
-        echo "Running tests with cuDF..."
-        sh """
-        ${dockerRun} cudf ${docker_binary} ${docker_args} tests/ci_build/test_python.sh mgpu-cudf
-        """
-      }
     } else {
       echo "Using a single GPU"
       sh """
       ${dockerRun} ${container_type} ${docker_binary} ${docker_args} tests/ci_build/test_python.sh gpu
       """
-      if (args.cuda_version != '9.0') {
-        echo "Running tests with cuDF..."
-        sh """
-        ${dockerRun} cudf ${docker_binary} ${docker_args} tests/ci_build/test_python.sh cudf
-        """
-      }
     }
-    // For CUDA 10.0 target, run cuDF tests too
     deleteDir()
   }
 }

Jenkinsfile-win64

@@ -12,13 +12,14 @@ pipeline {
   agent none
   // Build stages
   stages {
-    stage('Jenkins Win64: Get sources') {
-      agent { label 'win64 && build' }
+    stage('Jenkins Win64: Initialize') {
+      agent { label 'job_initializer' }
       steps {
         script {
           checkoutSrcs()
           commit_id = "${GIT_COMMIT}"
         }
+        sh 'python3 tests/jenkins_get_approval.py'
         stash name: 'srcs'
         milestone ordinal: 1
       }
@@ -40,7 +41,6 @@ pipeline {
         script {
           parallel ([
             'test-win64-cpu': { TestWin64CPU() },
-            'test-win64-gpu-cuda10.0': { TestWin64GPU(cuda_target: 'cuda10_0') },
             'test-win64-gpu-cuda10.1': { TestWin64GPU(cuda_target: 'cuda10_1') }
           ])
         }
@@ -138,7 +138,7 @@ def TestWin64GPU(args) {
     """
     echo "Installing Python dependencies..."
     bat """
-     conda activate && conda upgrade scikit-learn pandas numpy
+     conda activate && conda upgrade scikit-learn pandas numpy && python -m pip uninstall -y cupy-cuda100 cupy-cuda101 cupy-cuda102
     """
     echo "Running Python tests..."
     bat """

include/xgboost/version_config.h

@@ -6,6 +6,6 @@
 
 #define XGBOOST_VER_MAJOR 1
 #define XGBOOST_VER_MINOR 1
-#define XGBOOST_VER_PATCH 0
+#define XGBOOST_VER_PATCH 1
 
 #endif  // XGBOOST_VERSION_CONFIG_H_

jvm-packages/pom.xml

@@ -6,7 +6,7 @@
 
     <groupId>ml.dmlc</groupId>
     <artifactId>xgboost-jvm_2.12</artifactId>
-    <version>1.1.1</version>
+    <version>1.1.2</version>
     <packaging>pom</packaging>
     <name>XGBoost JVM Package</name>
     <description>JVM Package for XGBoost</description>

jvm-packages/xgboost4j-example/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.1.1</version>
+        <version>1.1.2</version>
     </parent>
     <artifactId>xgboost4j-example_2.12</artifactId>
-    <version>1.1.1</version>
+    <version>1.1.2</version>
     <packaging>jar</packaging>
     <build>
         <plugins>
@@ -26,7 +26,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j-spark_${scala.binary.version}</artifactId>
-            <version>1.1.1</version>
+            <version>1.1.2</version>
         </dependency>
         <dependency>
             <groupId>org.apache.spark</groupId>
@@ -37,7 +37,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j-flink_${scala.binary.version}</artifactId>
-            <version>1.1.1</version>
+            <version>1.1.2</version>
         </dependency>
         <dependency>
             <groupId>org.apache.commons</groupId>

jvm-packages/xgboost4j-flink/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.1.1</version>
+        <version>1.1.2</version>
     </parent>
     <artifactId>xgboost4j-flink_2.12</artifactId>
-    <version>1.1.1</version>
+    <version>1.1.2</version>
     <build>
         <plugins>
             <plugin>
@@ -26,7 +26,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j_${scala.binary.version}</artifactId>
-            <version>1.1.1</version>
+            <version>1.1.2</version>
         </dependency>
         <dependency>
             <groupId>org.apache.commons</groupId>

jvm-packages/xgboost4j-spark/pom.xml

@@ -6,7 +6,7 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.1.1</version>
+        <version>1.1.2</version>
     </parent>
     <artifactId>xgboost4j-spark_2.12</artifactId>
     <build>
@@ -24,7 +24,7 @@
         <dependency>
             <groupId>ml.dmlc</groupId>
             <artifactId>xgboost4j_${scala.binary.version}</artifactId>
-            <version>1.1.1</version>
+            <version>1.1.2</version>
         </dependency>
         <dependency>
             <groupId>org.apache.spark</groupId>

jvm-packages/xgboost4j/pom.xml

@@ -6,10 +6,10 @@
     <parent>
         <groupId>ml.dmlc</groupId>
         <artifactId>xgboost-jvm_2.12</artifactId>
-        <version>1.1.1</version>
+        <version>1.1.2</version>
     </parent>
     <artifactId>xgboost4j_2.12</artifactId>
-    <version>1.1.1</version>
+    <version>1.1.2</version>
     <packaging>jar</packaging>
 
     <dependencies>

src/c_api/c_api.cc

@@ -181,7 +181,7 @@ XGB_DLL int XGDMatrixSliceDMatrixEx(DMatrixHandle handle,
         << "slice does not support group structure";
   }
   DMatrix* dmat = static_cast<std::shared_ptr<DMatrix>*>(handle)->get();
-  *out = new std::shared_ptr<DMatrix>(dmat->Slice({idxset, len}));
+  *out = new std::shared_ptr<DMatrix>(dmat->Slice({idxset, static_cast<std::size_t>(len)}));
   API_END();
 }
 

tests/ci_build/Dockerfile.cudf

@@ -1,37 +0,0 @@
-ARG CUDA_VERSION
-FROM nvidia/cuda:$CUDA_VERSION-runtime-ubuntu16.04
-
-# Environment
-ENV DEBIAN_FRONTEND noninteractive
-SHELL ["/bin/bash", "-c"]   # Use Bash as shell
-
-# Install all basic requirements
-RUN \
-    apt-get update && \
-    apt-get install -y wget unzip bzip2 libgomp1 build-essential && \
-    # Python
-    wget -O Miniconda3.sh https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
-    bash Miniconda3.sh -b -p /opt/python
-
-ENV PATH=/opt/python/bin:$PATH
-
-# Create new Conda environment with cuDF, Dask, and cuPy
-RUN \
-    conda create -n cudf_test -c rapidsai -c nvidia -c conda-forge -c defaults \
-        python=3.7 cudf cudatoolkit=$CUDA_VERSION dask dask-cuda dask-cudf cupy \
-        numpy pytest scipy scikit-learn pandas matplotlib wheel python-kubernetes urllib3 graphviz
-
-ENV GOSU_VERSION 1.10
-
-# Install lightweight sudo (not bound to TTY)
-RUN set -ex; \
-    wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-amd64" && \
-    chmod +x /usr/local/bin/gosu && \
-    gosu nobody true
-
-# Default entry-point to use if running locally
-# It will preserve attributes of created files
-COPY entrypoint.sh /scripts/
-
-WORKDIR /workspace
-ENTRYPOINT ["/scripts/entrypoint.sh"]

tests/ci_build/Dockerfile.gpu

@@ -3,6 +3,7 @@ FROM nvidia/cuda:$CUDA_VERSION-runtime-ubuntu16.04
 
 # Environment
 ENV DEBIAN_FRONTEND noninteractive
+SHELL ["/bin/bash", "-c"]   # Use Bash as shell
 
 # Install all basic requirements
 RUN \
@@ -14,11 +15,11 @@ RUN \
 
 ENV PATH=/opt/python/bin:$PATH
 
-# Install Python packages
+# Create new Conda environment with cuDF, Dask, and cuPy
 RUN \
     conda create -n gpu_test -c rapidsai -c nvidia -c conda-forge -c defaults \
-        python=3.7 dask dask-cuda numpy pytest scipy  scikit-learn pandas \
-        matplotlib wheel python-kubernetes urllib3 graphviz
+        python=3.7 cudf=0.14 cudatoolkit=$CUDA_VERSION dask dask-cuda dask-cudf cupy \
+        numpy pytest scipy scikit-learn pandas matplotlib wheel python-kubernetes urllib3 graphviz
 
 ENV GOSU_VERSION 1.10
 

tests/ci_build/test_python.sh

@@ -44,20 +44,6 @@ case "$suite" in
     cd -
     ;;
 
-  cudf)
-    source activate cudf_test
-    install_xgboost
-    pytest -v -s -rxXs --fulltrace -m "not mgpu" \
-           tests/python-gpu/test_from_cudf.py tests/python-gpu/test_from_cupy.py \
-	   tests/python-gpu/test_gpu_prediction.py
-    ;;
-
-  mgpu-cudf)
-    source activate cudf_test
-    install_xgboost
-    pytest -v -s -rxXs --fulltrace -m "mgpu" tests/python-gpu/test_gpu_with_dask.py
-    ;;
-
   cpu)
     install_xgboost
     pytest -v -s --fulltrace tests/python
@@ -72,7 +58,7 @@ case "$suite" in
     ;;
 
   *)
-    echo "Usage: $0 {gpu|mgpu|cudf|cpu|cpu-py35}"
+    echo "Usage: $0 {gpu|mgpu|cpu|cpu-py35}"
     exit 1
     ;;
 esac

tests/jenkins_get_approval.py

@@ -0,0 +1,26 @@
+import boto3
+import json
+
+lambda_client = boto3.client('lambda', region_name='us-west-2')
+
+# Source code for the Lambda function is available at https://github.com/hcho3/xgboost-devops
+r = lambda_client.invoke(
+    FunctionName='XGBoostCICostWatcher',
+    InvocationType='RequestResponse',
+    Payload='{}'.encode('utf-8')
+)
+
+payload = r['Payload'].read().decode('utf-8')
+if 'FunctionError' in r:
+    msg = 'Error when invoking the Lambda function. Stack trace:\n'
+    error = json.loads(payload)
+    msg += f"    {error['errorType']}: {error['errorMessage']}\n"
+    for trace in error['stackTrace']:
+        for line in trace.split('\n'):
+            msg += f'    {line}\n'
+    raise RuntimeError(msg)
+response = json.loads(payload)
+if response['approved']:
+    print(f"Testing approved. Reason: {response['reason']}")
+else:
+    raise RuntimeError(f"Testing rejected. Reason: {response['reason']}")