Compare commits
12 Commits
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78d231264a | ||
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4615fa51ef | ||
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4bd5a33b10 |
@@ -1,5 +1,5 @@
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cmake_minimum_required(VERSION 3.14 FATAL_ERROR)
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project(xgboost LANGUAGES CXX C VERSION 1.6.0)
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project(xgboost LANGUAGES CXX C VERSION 1.6.1)
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include(cmake/Utils.cmake)
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list(APPEND CMAKE_MODULE_PATH "${xgboost_SOURCE_DIR}/cmake/modules")
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cmake_policy(SET CMP0022 NEW)
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@@ -153,9 +153,9 @@ def TestWin64() {
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conda activate ${env_name} && for /R %%i in (python-package\\dist\\*.whl) DO python -m pip install "%%i"
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"""
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echo "Running Python tests..."
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bat "conda activate ${env_name} && python -m pytest -v -s -rxXs --fulltrace tests\\python"
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bat "conda activate ${env_name} && python -X faulthandler -m pytest -v -s -rxXs --fulltrace tests\\python"
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bat """
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conda activate ${env_name} && python -m pytest -v -s -rxXs --fulltrace -m "(not slow) and (not mgpu)" tests\\python-gpu
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conda activate ${env_name} && python -X faulthandler -m pytest -v -s -rxXs --fulltrace -m "(not slow) and (not mgpu)" tests\\python-gpu
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"""
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bat "conda env remove --name ${env_name}"
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deleteDir()
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||||
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@@ -1 +1 @@
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@xgboost_VERSION_MAJOR@.@xgboost_VERSION_MINOR@.@xgboost_VERSION_PATCH@-dev
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@xgboost_VERSION_MAJOR@.@xgboost_VERSION_MINOR@.@xgboost_VERSION_PATCH@
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@@ -91,9 +91,9 @@ function(format_gencode_flags flags out)
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# Set up architecture flags
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if(NOT flags)
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if (CUDA_VERSION VERSION_GREATER_EQUAL "11.1")
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set(flags "50;52;60;61;70;75;80;86")
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set(flags "52;60;61;70;75;80;86")
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elseif (CUDA_VERSION VERSION_GREATER_EQUAL "11.0")
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set(flags "35;50;52;60;61;70;75;80")
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set(flags "52;60;61;70;75;80")
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elseif(CUDA_VERSION VERSION_GREATER_EQUAL "10.0")
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set(flags "35;50;52;60;61;70;75")
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elseif(CUDA_VERSION VERSION_GREATER_EQUAL "9.0")
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@@ -101,7 +101,7 @@ R
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JVM
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---
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You can use XGBoost4J in your Java/Scala application by adding XGBoost4J as a dependency:
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* XGBoost4j/XGBoost4j-Spark
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.. code-block:: xml
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:caption: Maven
|
||||
@@ -134,6 +134,39 @@ You can use XGBoost4J in your Java/Scala application by adding XGBoost4J as a de
|
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"ml.dmlc" %% "xgboost4j-spark" % "latest_version_num"
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)
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* XGBoost4j-GPU/XGBoost4j-Spark-GPU
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|
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.. code-block:: xml
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||||
:caption: Maven
|
||||
|
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<properties>
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||||
...
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||||
<!-- Specify Scala version in package name -->
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<scala.binary.version>2.12</scala.binary.version>
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</properties>
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||||
|
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<dependencies>
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||||
...
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<dependency>
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<groupId>ml.dmlc</groupId>
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<artifactId>xgboost4j-gpu_${scala.binary.version}</artifactId>
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<version>latest_version_num</version>
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</dependency>
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<dependency>
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<groupId>ml.dmlc</groupId>
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<artifactId>xgboost4j-spark-gpu_${scala.binary.version}</artifactId>
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<version>latest_version_num</version>
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</dependency>
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</dependencies>
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||||
|
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.. code-block:: scala
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:caption: sbt
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||||
|
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libraryDependencies ++= Seq(
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"ml.dmlc" %% "xgboost4j-gpu" % "latest_version_num",
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"ml.dmlc" %% "xgboost4j-spark-gpu" % "latest_version_num"
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)
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This will check out the latest stable version from the Maven Central.
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For the latest release version number, please check `release page <https://github.com/dmlc/xgboost/releases>`_.
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@@ -185,7 +218,7 @@ and Windows.) Download it and run the following commands:
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JVM
|
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---
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||||
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First add the following Maven repository hosted by the XGBoost project:
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* XGBoost4j/XGBoost4j-Spark
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.. code-block:: xml
|
||||
:caption: Maven
|
||||
@@ -234,6 +267,40 @@ Then add XGBoost4J as a dependency:
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"ml.dmlc" %% "xgboost4j-spark" % "latest_version_num-SNAPSHOT"
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||||
)
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||||
|
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* XGBoost4j-GPU/XGBoost4j-Spark-GPU
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|
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.. code-block:: xml
|
||||
:caption: maven
|
||||
|
||||
<properties>
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||||
...
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||||
<!-- Specify Scala version in package name -->
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<scala.binary.version>2.12</scala.binary.version>
|
||||
</properties>
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||||
|
||||
<dependencies>
|
||||
...
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<dependency>
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<groupId>ml.dmlc</groupId>
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<artifactId>xgboost4j-gpu_${scala.binary.version}</artifactId>
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<version>latest_version_num-SNAPSHOT</version>
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</dependency>
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<dependency>
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<groupId>ml.dmlc</groupId>
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<artifactId>xgboost4j-spark-gpu_${scala.binary.version}</artifactId>
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<version>latest_version_num-SNAPSHOT</version>
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</dependency>
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</dependencies>
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.. code-block:: scala
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:caption: sbt
|
||||
|
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libraryDependencies ++= Seq(
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"ml.dmlc" %% "xgboost4j-gpu" % "latest_version_num-SNAPSHOT",
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"ml.dmlc" %% "xgboost4j-spark-gpu" % "latest_version_num-SNAPSHOT"
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)
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Look up the ``version`` field in `pom.xml <https://github.com/dmlc/xgboost/blob/master/jvm-packages/pom.xml>`_ to get the correct version number.
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The SNAPSHOT JARs are hosted by the XGBoost project. Every commit in the ``master`` branch will automatically trigger generation of a new SNAPSHOT JAR. You can control how often Maven should upgrade your SNAPSHOT installation by specifying ``updatePolicy``. See `here <http://maven.apache.org/pom.html#Repositories>`_ for details.
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||||
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||||
@@ -35,6 +35,7 @@ Contents
|
||||
|
||||
java_intro
|
||||
XGBoost4J-Spark Tutorial <xgboost4j_spark_tutorial>
|
||||
XGBoost4J-Spark-GPU Tutorial <xgboost4j_spark_gpu_tutorial>
|
||||
Code Examples <https://github.com/dmlc/xgboost/tree/master/jvm-packages/xgboost4j-example>
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||||
XGBoost4J Java API <javadocs/index>
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||||
XGBoost4J Scala API <scaladocs/xgboost4j/index>
|
||||
|
||||
246
doc/jvm/xgboost4j_spark_gpu_tutorial.rst
Normal file
246
doc/jvm/xgboost4j_spark_gpu_tutorial.rst
Normal file
@@ -0,0 +1,246 @@
|
||||
#############################################
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||||
XGBoost4J-Spark-GPU Tutorial (version 1.6.1+)
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#############################################
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||||
|
||||
**XGBoost4J-Spark-GPU** is an open source library aiming to accelerate distributed XGBoost training on Apache Spark cluster from
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||||
end to end with GPUs by leveraging the `RAPIDS Accelerator for Apache Spark <https://nvidia.github.io/spark-rapids/>`_ product.
|
||||
|
||||
This tutorial will show you how to use **XGBoost4J-Spark-GPU**.
|
||||
|
||||
.. contents::
|
||||
:backlinks: none
|
||||
:local:
|
||||
|
||||
************************************************
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||||
Build an ML Application with XGBoost4J-Spark-GPU
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||||
************************************************
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||||
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||||
Add XGBoost to Your Project
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||||
===========================
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||||
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||||
Before we go into the tour of how to use XGBoost4J-Spark-GPU, you should first consult
|
||||
:ref:`Installation from Maven repository <install_jvm_packages>` in order to add XGBoost4J-Spark-GPU as
|
||||
a dependency for your project. We provide both stable releases and snapshots.
|
||||
|
||||
Data Preparation
|
||||
================
|
||||
|
||||
In this section, we use the `Iris <https://archive.ics.uci.edu/ml/datasets/iris>`_ dataset as an example to
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||||
showcase how we use Apache Spark to transform a raw dataset and make it fit the data interface of XGBoost.
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||||
|
||||
The Iris dataset is shipped in CSV format. Each instance contains 4 features, "sepal length", "sepal width",
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"petal length" and "petal width". In addition, it contains the "class" column, which is essentially the
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label with three possible values: "Iris Setosa", "Iris Versicolour" and "Iris Virginica".
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||||
|
||||
Read Dataset with Spark's Built-In Reader
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||||
-----------------------------------------
|
||||
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||||
.. code-block:: scala
|
||||
|
||||
import org.apache.spark.sql.SparkSession
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||||
import org.apache.spark.sql.types.{DoubleType, StringType, StructField, StructType}
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||||
|
||||
val spark = SparkSession.builder().getOrCreate()
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||||
|
||||
val labelName = "class"
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||||
val schema = new StructType(Array(
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||||
StructField("sepal length", DoubleType, true),
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||||
StructField("sepal width", DoubleType, true),
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||||
StructField("petal length", DoubleType, true),
|
||||
StructField("petal width", DoubleType, true),
|
||||
StructField(labelName, StringType, true)))
|
||||
|
||||
val xgbInput = spark.read.option("header", "false")
|
||||
.schema(schema)
|
||||
.csv(dataPath)
|
||||
|
||||
In the first line, we create an instance of a `SparkSession <https://spark.apache.org/docs/latest/sql-getting-started.html#starting-point-sparksession>`_
|
||||
which is the entry point of any Spark application working with DataFrames. The ``schema`` variable
|
||||
defines the schema of the DataFrame wrapping Iris data. With this explicitly set schema, we
|
||||
can define the column names as well as their types; otherwise the column names would be
|
||||
the default ones derived by Spark, such as ``_col0``, etc. Finally, we can use Spark's
|
||||
built-in CSV reader to load the Iris CSV file as a DataFrame named ``xgbInput``.
|
||||
|
||||
Apache Spark also contains many built-in readers for other formats such as ORC, Parquet, Avro, JSON.
|
||||
|
||||
|
||||
Transform Raw Iris Dataset
|
||||
--------------------------
|
||||
|
||||
To make the Iris dataset recognizable to XGBoost, we need to encode the String-typed
|
||||
label, i.e. "class", to the Double-typed label.
|
||||
|
||||
One way to convert the String-typed label to Double is to use Spark's built-in feature transformer
|
||||
`StringIndexer <https://spark.apache.org/docs/2.3.1/api/scala/index.html#org.apache.spark.ml.feature.StringIndexer>`_.
|
||||
But this feature is not accelerated in RAPIDS Accelerator, which means it will fall back
|
||||
to CPU. Instead, we use an alternative way to achieve the same goal with the following code:
|
||||
|
||||
.. code-block:: scala
|
||||
|
||||
import org.apache.spark.sql.expressions.Window
|
||||
import org.apache.spark.sql.functions._
|
||||
|
||||
val spec = Window.orderBy(labelName)
|
||||
val Array(train, test) = xgbInput
|
||||
.withColumn("tmpClassName", dense_rank().over(spec) - 1)
|
||||
.drop(labelName)
|
||||
.withColumnRenamed("tmpClassName", labelName)
|
||||
.randomSplit(Array(0.7, 0.3), seed = 1)
|
||||
|
||||
train.show(5)
|
||||
|
||||
.. code-block:: none
|
||||
|
||||
+------------+-----------+------------+-----------+-----+
|
||||
|sepal length|sepal width|petal length|petal width|class|
|
||||
+------------+-----------+------------+-----------+-----+
|
||||
| 4.3| 3.0| 1.1| 0.1| 0|
|
||||
| 4.4| 2.9| 1.4| 0.2| 0|
|
||||
| 4.4| 3.0| 1.3| 0.2| 0|
|
||||
| 4.4| 3.2| 1.3| 0.2| 0|
|
||||
| 4.6| 3.2| 1.4| 0.2| 0|
|
||||
+------------+-----------+------------+-----------+-----+
|
||||
|
||||
|
||||
With window operations, we have mapped the string column of labels to label indices.
|
||||
|
||||
Training
|
||||
========
|
||||
|
||||
The GPU version of XGBoost-Spark supports both regression and classification
|
||||
models. Although we use the Iris dataset in this tutorial to show how we use
|
||||
``XGBoost/XGBoost4J-Spark-GPU`` to resolve a multi-classes classification problem, the
|
||||
usage in Regression is very similar to classification.
|
||||
|
||||
To train a XGBoost model for classification, we need to claim a XGBoostClassifier first:
|
||||
|
||||
.. code-block:: scala
|
||||
|
||||
import ml.dmlc.xgboost4j.scala.spark.XGBoostClassifier
|
||||
val xgbParam = Map(
|
||||
"objective" -> "multi:softprob",
|
||||
"num_class" -> 3,
|
||||
"num_round" -> 100,
|
||||
"tree_method" -> "gpu_hist",
|
||||
"num_workers" -> 1)
|
||||
|
||||
val featuresNames = schema.fieldNames.filter(name => name != labelName)
|
||||
|
||||
val xgbClassifier = new XGBoostClassifier(xgbParam)
|
||||
.setFeaturesCol(featuresNames)
|
||||
.setLabelCol(labelName)
|
||||
|
||||
The available parameters for training a XGBoost model can be found in :doc:`here </parameter>`.
|
||||
Similar to the XGBoost4J-Spark package, in addition to the default set of parameters,
|
||||
XGBoost4J-Spark-GPU also supports the camel-case variant of these parameters to be
|
||||
consistent with Spark's MLlib naming convention.
|
||||
|
||||
Specifically, each parameter in :doc:`this page </parameter>` has its equivalent form in
|
||||
XGBoost4J-Spark-GPU with camel case. For example, to set ``max_depth`` for each tree, you can pass
|
||||
parameter just like what we did in the above code snippet (as ``max_depth`` wrapped in a Map), or
|
||||
you can do it through setters in XGBoostClassifer:
|
||||
|
||||
.. code-block:: scala
|
||||
|
||||
val xgbClassifier = new XGBoostClassifier(xgbParam)
|
||||
.setFeaturesCol(featuresNames)
|
||||
.setLabelCol(labelName)
|
||||
xgbClassifier.setMaxDepth(2)
|
||||
|
||||
.. note::
|
||||
|
||||
In contrast with XGBoost4j-Spark which accepts both a feature column with VectorUDT type and
|
||||
an array of feature column names, XGBoost4j-Spark-GPU only accepts an array of feature
|
||||
column names by ``setFeaturesCol(value: Array[String])``.
|
||||
|
||||
After setting XGBoostClassifier parameters and feature/label columns, we can build a
|
||||
transformer, XGBoostClassificationModel by fitting XGBoostClassifier with the input
|
||||
DataFrame. This ``fit`` operation is essentially the training process and the generated
|
||||
model can then be used in other tasks like prediction.
|
||||
|
||||
.. code-block:: scala
|
||||
|
||||
val xgbClassificationModel = xgbClassifier.fit(train)
|
||||
|
||||
Prediction
|
||||
==========
|
||||
|
||||
When we get a model, either a XGBoostClassificationModel or a XGBoostRegressionModel, it takes a DataFrame as an input,
|
||||
reads the column containing feature vectors, predicts for each feature vector, and outputs a new DataFrame
|
||||
with the following columns by default:
|
||||
|
||||
* XGBoostClassificationModel will output margins (``rawPredictionCol``), probabilities(``probabilityCol``) and the eventual prediction labels (``predictionCol``) for each possible label.
|
||||
* XGBoostRegressionModel will output prediction a label(``predictionCol``).
|
||||
|
||||
.. code-block:: scala
|
||||
|
||||
val xgbClassificationModel = xgbClassifier.fit(train)
|
||||
val results = xgbClassificationModel.transform(test)
|
||||
results.show()
|
||||
|
||||
With the above code snippet, we get a DataFrame as result, which contains the margin, probability for each class,
|
||||
and the prediction for each instance.
|
||||
|
||||
.. code-block:: none
|
||||
|
||||
+------------+-----------+------------------+-------------------+-----+--------------------+--------------------+----------+
|
||||
|sepal length|sepal width| petal length| petal width|class| rawPrediction| probability|prediction|
|
||||
+------------+-----------+------------------+-------------------+-----+--------------------+--------------------+----------+
|
||||
| 4.5| 2.3| 1.3|0.30000000000000004| 0|[3.16666603088378...|[0.98853939771652...| 0.0|
|
||||
| 4.6| 3.1| 1.5| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 4.8| 3.1| 1.6| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 4.8| 3.4| 1.6| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 4.8| 3.4|1.9000000000000001| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 4.9| 2.4| 3.3| 1.0| 1|[-2.1498908996582...|[0.00596602633595...| 1.0|
|
||||
| 4.9| 2.5| 4.5| 1.7| 2|[-2.1498908996582...|[0.00596602633595...| 1.0|
|
||||
| 5.0| 3.5| 1.3|0.30000000000000004| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.1| 2.5| 3.0| 1.1| 1|[3.16666603088378...|[0.98853939771652...| 0.0|
|
||||
| 5.1| 3.3| 1.7| 0.5| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.1| 3.5| 1.4| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.1| 3.8| 1.6| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.2| 3.4| 1.4| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.2| 3.5| 1.5| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.2| 4.1| 1.5| 0.1| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.4| 3.9| 1.7| 0.4| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.5| 2.4| 3.8| 1.1| 1|[-2.1498908996582...|[0.00596602633595...| 1.0|
|
||||
| 5.5| 4.2| 1.4| 0.2| 0|[3.25857257843017...|[0.98969423770904...| 0.0|
|
||||
| 5.7| 2.5| 5.0| 2.0| 2|[-2.1498908996582...|[0.00280966912396...| 2.0|
|
||||
| 5.7| 3.0| 4.2| 1.2| 1|[-2.1498908996582...|[0.00643939292058...| 1.0|
|
||||
+------------+-----------+------------------+-------------------+-----+--------------------+--------------------+----------+
|
||||
|
||||
**********************
|
||||
Submit the application
|
||||
**********************
|
||||
|
||||
Here’s an example to submit an end-to-end XGBoost-4j-Spark-GPU Spark application to an
|
||||
Apache Spark Standalone cluster, assuming the application main class is Iris and the
|
||||
application jar is iris-1.0.0.jar
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
cudf_version=22.02.0
|
||||
rapids_version=22.02.0
|
||||
xgboost_version=1.6.1
|
||||
main_class=Iris
|
||||
app_jar=iris-1.0.0.jar
|
||||
|
||||
spark-submit \
|
||||
--master $master \
|
||||
--packages ai.rapids:cudf:${cudf_version},com.nvidia:rapids-4-spark_2.12:${rapids_version},ml.dmlc:xgboost4j-gpu_2.12:${xgboost_version},ml.dmlc:xgboost4j-spark-gpu_2.12:${xgboost_version} \
|
||||
--conf spark.executor.cores=12 \
|
||||
--conf spark.task.cpus=1 \
|
||||
--conf spark.executor.resource.gpu.amount=1 \
|
||||
--conf spark.task.resource.gpu.amount=0.08 \
|
||||
--conf spark.rapids.sql.csv.read.double.enabled=true \
|
||||
--conf spark.rapids.sql.hasNans=false \
|
||||
--conf spark.plugins=com.nvidia.spark.SQLPlugin \
|
||||
--class ${main_class} \
|
||||
${app_jar}
|
||||
|
||||
* First, we need to specify the ``RAPIDS Accelerator, cudf, xgboost4j-gpu, xgboost4j-spark-gpu`` packages by ``--packages``
|
||||
* Second, ``RAPIDS Accelerator`` is a Spark plugin, so we need to configure it by specifying ``spark.plugins=com.nvidia.spark.SQLPlugin``
|
||||
|
||||
For details about other ``RAPIDS Accelerator`` other configurations, please refer to the `configuration <https://nvidia.github.io/spark-rapids/docs/configs.html>`_.
|
||||
|
||||
For ``RAPIDS Accelerator Frequently Asked Questions``, please refer to the
|
||||
`frequently-asked-questions <https://nvidia.github.io/spark-rapids/docs/FAQ.html#frequently-asked-questions>`_.
|
||||
@@ -16,12 +16,6 @@ This tutorial is to cover the end-to-end process to build a machine learning pip
|
||||
* Building a Machine Learning Pipeline with XGBoost4J-Spark
|
||||
* Running XGBoost4J-Spark in Production
|
||||
|
||||
.. note::
|
||||
|
||||
**SparkContext will be stopped by default when XGBoost training task fails**.
|
||||
|
||||
XGBoost4J-Spark 1.2.0+ exposes a parameter **kill_spark_context_on_worker_failure**. Set **kill_spark_context_on_worker_failure** to **false** so that the SparkContext will not be stopping on training failure. Instead of stopping the SparkContext, XGBoost4J-Spark will throw an exception instead. Users who want to re-use the SparkContext should wrap the training code in a try-catch block.
|
||||
|
||||
.. contents::
|
||||
:backlinks: none
|
||||
:local:
|
||||
@@ -127,6 +121,11 @@ Now, we have a DataFrame containing only two columns, "features" which contains
|
||||
"sepal length", "sepal width", "petal length" and "petal width" and "classIndex" which has Double-typed
|
||||
labels. A DataFrame like this (containing vector-represented features and numeric labels) can be fed to XGBoost4J-Spark's training engine directly.
|
||||
|
||||
.. note::
|
||||
|
||||
There is no need to assemble feature columns from version 1.6.1+. Instead, users can specify an array of
|
||||
feture column names by ``setFeaturesCol(value: Array[String])`` and XGBoost4j-Spark will do it.
|
||||
|
||||
Dealing with missing values
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
||||
|
||||
|
||||
@@ -74,23 +74,20 @@ Optimal Partitioning
|
||||
.. versionadded:: 1.6
|
||||
|
||||
Optimal partitioning is a technique for partitioning the categorical predictors for each
|
||||
node split, the proof of optimality for numerical objectives like ``RMSE`` was first
|
||||
introduced by `[1] <#references>`__. The algorithm is used in decision trees for handling
|
||||
regression and binary classification tasks `[2] <#references>`__, later LightGBM `[3]
|
||||
<#references>`__ brought it to the context of gradient boosting trees and now is also
|
||||
adopted in XGBoost as an optional feature for handling categorical splits. More
|
||||
specifically, the proof by Fisher `[1] <#references>`__ states that, when trying to
|
||||
partition a set of discrete values into groups based on the distances between a measure of
|
||||
these values, one only needs to look at sorted partitions instead of enumerating all
|
||||
possible permutations. In the context of decision trees, the discrete values are
|
||||
categories, and the measure is the output leaf value. Intuitively, we want to group the
|
||||
categories that output similar leaf values. During split finding, we first sort the
|
||||
gradient histogram to prepare the contiguous partitions then enumerate the splits
|
||||
node split, the proof of optimality for numerical output was first introduced by `[1]
|
||||
<#references>`__. The algorithm is used in decision trees `[2] <#references>`__, later
|
||||
LightGBM `[3] <#references>`__ brought it to the context of gradient boosting trees and
|
||||
now is also adopted in XGBoost as an optional feature for handling categorical
|
||||
splits. More specifically, the proof by Fisher `[1] <#references>`__ states that, when
|
||||
trying to partition a set of discrete values into groups based on the distances between a
|
||||
measure of these values, one only needs to look at sorted partitions instead of
|
||||
enumerating all possible permutations. In the context of decision trees, the discrete
|
||||
values are categories, and the measure is the output leaf value. Intuitively, we want to
|
||||
group the categories that output similar leaf values. During split finding, we first sort
|
||||
the gradient histogram to prepare the contiguous partitions then enumerate the splits
|
||||
according to these sorted values. One of the related parameters for XGBoost is
|
||||
``max_cat_to_one_hot``, which controls whether one-hot encoding or partitioning should be
|
||||
used for each feature, see :doc:`/parameter` for details. When objective is not
|
||||
regression or binary classification, XGBoost will fallback to using onehot encoding
|
||||
instead.
|
||||
used for each feature, see :doc:`/parameter` for details.
|
||||
|
||||
|
||||
**********************
|
||||
|
||||
@@ -14,6 +14,7 @@ See `Awesome XGBoost <https://github.com/dmlc/xgboost/tree/master/demo>`_ for mo
|
||||
Distributed XGBoost with AWS YARN <aws_yarn>
|
||||
kubernetes
|
||||
Distributed XGBoost with XGBoost4J-Spark <https://xgboost.readthedocs.io/en/latest/jvm/xgboost4j_spark_tutorial.html>
|
||||
Distributed XGBoost with XGBoost4J-Spark-GPU <https://xgboost.readthedocs.io/en/latest/jvm/xgboost4j_spark_gpu_tutorial.html>
|
||||
dask
|
||||
ray
|
||||
dart
|
||||
|
||||
@@ -36,10 +36,6 @@ struct ObjInfo {
|
||||
|
||||
explicit ObjInfo(Task t) : task{t} {}
|
||||
ObjInfo(Task t, bool khess) : task{t}, const_hess{khess} {}
|
||||
|
||||
XGBOOST_DEVICE bool UseOneHot() const {
|
||||
return (task != ObjInfo::kRegression && task != ObjInfo::kBinary);
|
||||
}
|
||||
};
|
||||
} // namespace xgboost
|
||||
#endif // XGBOOST_TASK_H_
|
||||
|
||||
@@ -6,6 +6,6 @@
|
||||
|
||||
#define XGBOOST_VER_MAJOR 1
|
||||
#define XGBOOST_VER_MINOR 6
|
||||
#define XGBOOST_VER_PATCH 0
|
||||
#define XGBOOST_VER_PATCH 1
|
||||
|
||||
#endif // XGBOOST_VERSION_CONFIG_H_
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
<packaging>pom</packaging>
|
||||
<name>XGBoost JVM Package</name>
|
||||
<description>JVM Package for XGBoost</description>
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j-example_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
<packaging>jar</packaging>
|
||||
<build>
|
||||
<plugins>
|
||||
@@ -26,7 +26,7 @@
|
||||
<dependency>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost4j-spark_${scala.binary.version}</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.spark</groupId>
|
||||
@@ -37,7 +37,7 @@
|
||||
<dependency>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost4j-flink_${scala.binary.version}</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.commons</groupId>
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j-flink_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
<build>
|
||||
<plugins>
|
||||
<plugin>
|
||||
@@ -26,7 +26,7 @@
|
||||
<dependency>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost4j_${scala.binary.version}</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.commons</groupId>
|
||||
|
||||
@@ -6,10 +6,10 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j-gpu_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<dependencies>
|
||||
@@ -20,11 +20,6 @@
|
||||
<classifier>${cudf.classifier}</classifier>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>com.fasterxml.jackson.core</groupId>
|
||||
<artifactId>jackson-databind</artifactId>
|
||||
<version>2.10.5.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.hadoop</groupId>
|
||||
<artifactId>hadoop-hdfs</artifactId>
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2021 by Contributors
|
||||
Copyright (c) 2021-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,15 +16,7 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.gpu.java;
|
||||
|
||||
import java.io.ByteArrayOutputStream;
|
||||
import java.io.IOException;
|
||||
|
||||
import com.fasterxml.jackson.core.JsonFactory;
|
||||
import com.fasterxml.jackson.core.JsonGenerator;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.fasterxml.jackson.databind.node.ArrayNode;
|
||||
import com.fasterxml.jackson.databind.node.JsonNodeFactory;
|
||||
import com.fasterxml.jackson.databind.node.ObjectNode;
|
||||
import java.util.ArrayList;
|
||||
|
||||
/**
|
||||
* Cudf utilities to build cuda array interface against {@link CudfColumn}
|
||||
@@ -42,58 +34,64 @@ class CudfUtils {
|
||||
|
||||
// Helper class to build array interface string
|
||||
private static class Builder {
|
||||
private JsonNodeFactory nodeFactory = new JsonNodeFactory(false);
|
||||
private ArrayNode rootArrayNode = nodeFactory.arrayNode();
|
||||
private ArrayList<String> colArrayInterfaces = new ArrayList<String>();
|
||||
|
||||
private Builder add(CudfColumn... columns) {
|
||||
if (columns == null || columns.length <= 0) {
|
||||
throw new IllegalArgumentException("At least one ColumnData is required.");
|
||||
}
|
||||
for (CudfColumn cd : columns) {
|
||||
rootArrayNode.add(buildColumnObject(cd));
|
||||
colArrayInterfaces.add(buildColumnObject(cd));
|
||||
}
|
||||
return this;
|
||||
}
|
||||
|
||||
private String build() {
|
||||
try {
|
||||
ByteArrayOutputStream bos = new ByteArrayOutputStream();
|
||||
JsonGenerator jsonGen = new JsonFactory().createGenerator(bos);
|
||||
new ObjectMapper().writeTree(jsonGen, rootArrayNode);
|
||||
return bos.toString();
|
||||
} catch (IOException ie) {
|
||||
ie.printStackTrace();
|
||||
throw new RuntimeException("Failed to build array interface. Error: " + ie);
|
||||
StringBuilder builder = new StringBuilder();
|
||||
builder.append("[");
|
||||
for (int i = 0; i < colArrayInterfaces.size(); i++) {
|
||||
builder.append(colArrayInterfaces.get(i));
|
||||
if (i != colArrayInterfaces.size() - 1) {
|
||||
builder.append(",");
|
||||
}
|
||||
}
|
||||
builder.append("]");
|
||||
return builder.toString();
|
||||
}
|
||||
|
||||
private ObjectNode buildColumnObject(CudfColumn column) {
|
||||
/** build the whole column information including data and valid info */
|
||||
private String buildColumnObject(CudfColumn column) {
|
||||
if (column.getDataPtr() == 0) {
|
||||
throw new IllegalArgumentException("Empty column data is NOT accepted!");
|
||||
}
|
||||
if (column.getTypeStr() == null || column.getTypeStr().isEmpty()) {
|
||||
throw new IllegalArgumentException("Empty type string is NOT accepted!");
|
||||
}
|
||||
ObjectNode colDataObj = buildMetaObject(column.getDataPtr(), column.getShape(),
|
||||
column.getTypeStr());
|
||||
|
||||
StringBuilder builder = new StringBuilder();
|
||||
String colData = buildMetaObject(column.getDataPtr(), column.getShape(),
|
||||
column.getTypeStr());
|
||||
builder.append("{");
|
||||
builder.append(colData);
|
||||
if (column.getValidPtr() != 0 && column.getNullCount() != 0) {
|
||||
ObjectNode validObj = buildMetaObject(column.getValidPtr(), column.getShape(), "<t1");
|
||||
colDataObj.set("mask", validObj);
|
||||
String validString = buildMetaObject(column.getValidPtr(), column.getShape(), "<t1");
|
||||
builder.append(",\"mask\":");
|
||||
builder.append("{");
|
||||
builder.append(validString);
|
||||
builder.append("}");
|
||||
}
|
||||
return colDataObj;
|
||||
builder.append("}");
|
||||
return builder.toString();
|
||||
}
|
||||
|
||||
private ObjectNode buildMetaObject(long ptr, long shape, final String typeStr) {
|
||||
ObjectNode objNode = nodeFactory.objectNode();
|
||||
ArrayNode shapeNode = objNode.putArray("shape");
|
||||
shapeNode.add(shape);
|
||||
ArrayNode dataNode = objNode.putArray("data");
|
||||
dataNode.add(ptr)
|
||||
.add(false);
|
||||
objNode.put("typestr", typeStr)
|
||||
.put("version", 1);
|
||||
return objNode;
|
||||
/** build the base information of a column */
|
||||
private String buildMetaObject(long ptr, long shape, final String typeStr) {
|
||||
StringBuilder builder = new StringBuilder();
|
||||
builder.append("\"shape\":[" + shape + "],");
|
||||
builder.append("\"data\":[" + ptr + "," + "false" + "],");
|
||||
builder.append("\"typestr\":\"" + typeStr + "\",");
|
||||
builder.append("\"version\":" + 1);
|
||||
return builder.toString();
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -69,7 +69,7 @@ public class BoosterTest {
|
||||
.hasHeader().build();
|
||||
|
||||
int maxBin = 16;
|
||||
int round = 100;
|
||||
int round = 10;
|
||||
//set params
|
||||
Map<String, Object> paramMap = new HashMap<String, Object>() {
|
||||
{
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j-spark-gpu_2.12</artifactId>
|
||||
<build>
|
||||
@@ -24,7 +24,7 @@
|
||||
<dependency>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost4j-gpu_${scala.binary.version}</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.spark</groupId>
|
||||
|
||||
@@ -56,18 +56,20 @@ class GpuPreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/**
|
||||
* Convert the Dataset[_] to RDD[Watches] which will be fed to XGBoost
|
||||
* Convert the Dataset[_] to RDD[() => Watches] which will be fed to XGBoost
|
||||
*
|
||||
* @param estimator [[XGBoostClassifier]] or [[XGBoostRegressor]]
|
||||
* @param dataset the training data
|
||||
* @param params all user defined and defaulted params
|
||||
* @return [[XGBoostExecutionParams]] => (RDD[[Watches]], Option[ RDD[_] ])
|
||||
* RDD[Watches] will be used as the training input
|
||||
* @return [[XGBoostExecutionParams]] => (Boolean, RDD[[() => Watches]], Option[ RDD[_] ])
|
||||
* Boolean if building DMatrix in rabit context
|
||||
* RDD[() => Watches] will be used as the training input
|
||||
* Option[ RDD[_] ] is the optional cached RDD
|
||||
*/
|
||||
override def buildDatasetToRDD(estimator: Estimator[_],
|
||||
dataset: Dataset[_],
|
||||
params: Map[String, Any]): XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]]) = {
|
||||
params: Map[String, Any]):
|
||||
XGBoostExecutionParams => (Boolean, RDD[() => Watches], Option[RDD[_]]) = {
|
||||
GpuPreXGBoost.buildDatasetToRDD(estimator, dataset, params)
|
||||
}
|
||||
|
||||
@@ -116,19 +118,21 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/**
|
||||
* Convert the Dataset[_] to RDD[Watches] which will be fed to XGBoost
|
||||
* Convert the Dataset[_] to RDD[() => Watches] which will be fed to XGBoost
|
||||
*
|
||||
* @param estimator supports XGBoostClassifier and XGBoostRegressor
|
||||
* @param dataset the training data
|
||||
* @param params all user defined and defaulted params
|
||||
* @return [[XGBoostExecutionParams]] => (RDD[[Watches]], Option[ RDD[_] ])
|
||||
* RDD[Watches] will be used as the training input
|
||||
* @return [[XGBoostExecutionParams]] => (Boolean, RDD[[() => Watches]], Option[ RDD[_] ])
|
||||
* Boolean if building DMatrix in rabit context
|
||||
* RDD[() => Watches] will be used as the training input to build DMatrix
|
||||
* Option[ RDD[_] ] is the optional cached RDD
|
||||
*/
|
||||
override def buildDatasetToRDD(
|
||||
estimator: Estimator[_],
|
||||
dataset: Dataset[_],
|
||||
params: Map[String, Any]): XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]]) = {
|
||||
params: Map[String, Any]):
|
||||
XGBoostExecutionParams => (Boolean, RDD[() => Watches], Option[RDD[_]]) = {
|
||||
|
||||
val (Seq(labelName, weightName, marginName), feturesCols, groupName, evalSets) =
|
||||
estimator match {
|
||||
@@ -166,7 +170,7 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
xgbExecParams: XGBoostExecutionParams =>
|
||||
val dataMap = prepareInputData(trainingData, evalDataMap, xgbExecParams.numWorkers,
|
||||
xgbExecParams.cacheTrainingSet)
|
||||
(buildRDDWatches(dataMap, xgbExecParams, evalDataMap.isEmpty), None)
|
||||
(true, buildRDDWatches(dataMap, xgbExecParams, evalDataMap.isEmpty), None)
|
||||
}
|
||||
|
||||
/**
|
||||
@@ -403,14 +407,9 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
private def repartitionInputData(dataFrame: DataFrame, nWorkers: Int): DataFrame = {
|
||||
// We can't check dataFrame.rdd.getNumPartitions == nWorkers here, since dataFrame.rdd is
|
||||
// a lazy variable. If we call it here, we will not directly extract RDD[Table] again,
|
||||
// instead, we will involve Columnar -> Row -> Columnar and decrease the performance
|
||||
if (nWorkers == 1) {
|
||||
dataFrame.coalesce(1)
|
||||
} else {
|
||||
dataFrame.repartition(nWorkers)
|
||||
}
|
||||
// we can't involve any coalesce operation here, since Barrier mode will check
|
||||
// the RDD patterns which does not allow coalesce.
|
||||
dataFrame.repartition(nWorkers)
|
||||
}
|
||||
|
||||
private def repartitionForGroup(
|
||||
@@ -448,7 +447,7 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
private def buildRDDWatches(
|
||||
dataMap: Map[String, ColumnDataBatch],
|
||||
xgbExeParams: XGBoostExecutionParams,
|
||||
noEvalSet: Boolean): RDD[Watches] = {
|
||||
noEvalSet: Boolean): RDD[() => Watches] = {
|
||||
|
||||
val sc = dataMap(TRAIN_NAME).rawDF.sparkSession.sparkContext
|
||||
val maxBin = xgbExeParams.toMap.getOrElse("max_bin", 256).asInstanceOf[Int]
|
||||
@@ -459,7 +458,7 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
GpuUtils.toColumnarRdd(dataMap(TRAIN_NAME).rawDF).mapPartitions({
|
||||
iter =>
|
||||
val iterColBatch = iter.map(table => new GpuColumnBatch(table, null))
|
||||
Iterator(buildWatches(
|
||||
Iterator(() => buildWatches(
|
||||
PreXGBoost.getCacheDirName(xgbExeParams.useExternalMemory), xgbExeParams.missing,
|
||||
colIndicesForTrain, iterColBatch, maxBin))
|
||||
})
|
||||
@@ -469,7 +468,7 @@ object GpuPreXGBoost extends PreXGBoostProvider {
|
||||
val nameAndColIndices = dataMap.map(nc => (nc._1, nc._2.colIndices))
|
||||
coPartitionForGpu(dataMap, sc, xgbExeParams.numWorkers).mapPartitions {
|
||||
nameAndColumnBatchIter =>
|
||||
Iterator(buildWatchesWithEval(
|
||||
Iterator(() => buildWatchesWithEval(
|
||||
PreXGBoost.getCacheDirName(xgbExeParams.useExternalMemory), xgbExeParams.missing,
|
||||
nameAndColIndices, nameAndColumnBatchIter, maxBin))
|
||||
}
|
||||
|
||||
@@ -112,7 +112,7 @@ private[spark] object GpuUtils {
|
||||
val msg = if (fitting) "train" else "transform"
|
||||
// feature columns
|
||||
require(featureNames.nonEmpty, s"Gpu $msg requires features columns. " +
|
||||
"please refer to setFeaturesCols!")
|
||||
"please refer to `setFeaturesCol(value: Array[String])`!")
|
||||
featureNames.foreach(fn => checkNumericType(schema, fn))
|
||||
if (fitting) {
|
||||
require(labelName.nonEmpty, "label column is not set.")
|
||||
|
||||
@@ -39,13 +39,8 @@ trait GpuTestSuite extends FunSuite with TmpFolderSuite {
|
||||
|
||||
def enableCsvConf(): SparkConf = {
|
||||
new SparkConf()
|
||||
.set(RapidsConf.ENABLE_READ_CSV_DATES.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_BYTES.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_SHORTS.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_INTEGERS.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_LONGS.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_FLOATS.key, "true")
|
||||
.set(RapidsConf.ENABLE_READ_CSV_DOUBLES.key, "true")
|
||||
.set("spark.rapids.sql.csv.read.float.enabled", "true")
|
||||
.set("spark.rapids.sql.csv.read.double.enabled", "true")
|
||||
}
|
||||
|
||||
def withGpuSparkSession[U](conf: SparkConf = new SparkConf())(f: SparkSession => U): U = {
|
||||
@@ -246,12 +241,13 @@ object SparkSessionHolder extends Logging {
|
||||
Locale.setDefault(Locale.US)
|
||||
|
||||
val builder = SparkSession.builder()
|
||||
.master("local[1]")
|
||||
.master("local[2]")
|
||||
.config("spark.sql.adaptive.enabled", "false")
|
||||
.config("spark.rapids.sql.enabled", "false")
|
||||
.config("spark.rapids.sql.test.enabled", "false")
|
||||
.config("spark.plugins", "com.nvidia.spark.SQLPlugin")
|
||||
.config("spark.rapids.memory.gpu.pooling.enabled", "false") // Disable RMM for unit tests.
|
||||
.config("spark.sql.files.maxPartitionBytes", "1000")
|
||||
.appName("XGBoost4j-Spark-Gpu unit test")
|
||||
|
||||
builder.getOrCreate()
|
||||
|
||||
@@ -126,7 +126,7 @@ class GpuXGBoostClassifierSuite extends GpuTestSuite {
|
||||
|
||||
val vectorAssembler = new VectorAssembler()
|
||||
.setHandleInvalid("keep")
|
||||
.setInputCols(featureNames.toArray)
|
||||
.setInputCols(featureNames)
|
||||
.setOutputCol("features")
|
||||
val trainingDf = vectorAssembler.transform(rawInput).select("features", labelName)
|
||||
|
||||
@@ -147,12 +147,12 @@ class GpuXGBoostClassifierSuite extends GpuTestSuite {
|
||||
.csv(dataPath).randomSplit(Array(0.7, 0.3), seed = 1)
|
||||
|
||||
// Since CPU model does not know the information about the features cols that GPU transform
|
||||
// pipeline requires. End user needs to setFeaturesCols in the model manually
|
||||
val thrown = intercept[IllegalArgumentException](cpuModel
|
||||
// pipeline requires. End user needs to setFeaturesCol(features: Array[String]) in the model
|
||||
// manually
|
||||
val thrown = intercept[NoSuchElementException](cpuModel
|
||||
.transform(testDf)
|
||||
.collect())
|
||||
assert(thrown.getMessage.contains("Gpu transform requires features columns. " +
|
||||
"please refer to setFeaturesCols"))
|
||||
assert(thrown.getMessage.contains("Failed to find a default value for featuresCols"))
|
||||
|
||||
val left = cpuModel
|
||||
.setFeaturesCol(featureNames)
|
||||
@@ -195,17 +195,16 @@ class GpuXGBoostClassifierSuite extends GpuTestSuite {
|
||||
val featureColName = "feature_col"
|
||||
val vectorAssembler = new VectorAssembler()
|
||||
.setHandleInvalid("keep")
|
||||
.setInputCols(featureNames.toArray)
|
||||
.setInputCols(featureNames)
|
||||
.setOutputCol(featureColName)
|
||||
val testDf = vectorAssembler.transform(rawInput).select(featureColName, labelName)
|
||||
|
||||
// Since GPU model does not know the information about the features col name that CPU
|
||||
// transform pipeline requires. End user needs to setFeaturesCol in the model manually
|
||||
val thrown = intercept[IllegalArgumentException](
|
||||
intercept[IllegalArgumentException](
|
||||
gpuModel
|
||||
.transform(testDf)
|
||||
.collect())
|
||||
assert(thrown.getMessage.contains("features does not exist"))
|
||||
|
||||
val left = gpuModel
|
||||
.setFeaturesCol(featureColName)
|
||||
|
||||
@@ -108,12 +108,15 @@ class GpuXGBoostGeneralSuite extends GpuTestSuite {
|
||||
val trainingDf = trainingData.toDF(allColumnNames: _*)
|
||||
val xgbParam = Map("eta" -> 0.1f, "max_depth" -> 2, "objective" -> "multi:softprob",
|
||||
"num_class" -> 3, "num_round" -> 5, "num_workers" -> 1, "tree_method" -> "gpu_hist")
|
||||
val thrown = intercept[IllegalArgumentException] {
|
||||
|
||||
// GPU train requires featuresCols. If not specified,
|
||||
// then NoSuchElementException will be thrown
|
||||
val thrown = intercept[NoSuchElementException] {
|
||||
new XGBoostClassifier(xgbParam)
|
||||
.setLabelCol(labelName)
|
||||
.fit(trainingDf)
|
||||
}
|
||||
assert(thrown.getMessage.contains("Gpu train requires features columns."))
|
||||
assert(thrown.getMessage.contains("Failed to find a default value for featuresCols"))
|
||||
|
||||
val thrown1 = intercept[IllegalArgumentException] {
|
||||
new XGBoostClassifier(xgbParam)
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2021 by Contributors
|
||||
Copyright (c) 2021-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -86,7 +86,7 @@ class GpuXGBoostRegressorSuite extends GpuTestSuite {
|
||||
.csv(getResourcePath("/rank.train.csv")).randomSplit(Array(0.7, 0.3), seed = 1)
|
||||
|
||||
val classifier = new XGBoostRegressor(xgbParam)
|
||||
.setFeaturesCols(featureNames)
|
||||
.setFeaturesCol(featureNames)
|
||||
.setLabelCol(labelName)
|
||||
.setTreeMethod("gpu_hist")
|
||||
(classifier.fit(rawInput), testDf)
|
||||
@@ -122,7 +122,7 @@ class GpuXGBoostRegressorSuite extends GpuTestSuite {
|
||||
|
||||
val vectorAssembler = new VectorAssembler()
|
||||
.setHandleInvalid("keep")
|
||||
.setInputCols(featureNames.toArray)
|
||||
.setInputCols(featureNames)
|
||||
.setOutputCol("features")
|
||||
val trainingDf = vectorAssembler.transform(rawInput).select("features", labelName)
|
||||
|
||||
@@ -143,20 +143,20 @@ class GpuXGBoostRegressorSuite extends GpuTestSuite {
|
||||
.csv(getResourcePath("/rank.train.csv")).randomSplit(Array(0.7, 0.3), seed = 1)
|
||||
|
||||
// Since CPU model does not know the information about the features cols that GPU transform
|
||||
// pipeline requires. End user needs to setFeaturesCols in the model manually
|
||||
val thrown = intercept[IllegalArgumentException](cpuModel
|
||||
// pipeline requires. End user needs to setFeaturesCol(features: Array[String]) in the model
|
||||
// manually
|
||||
val thrown = intercept[NoSuchElementException](cpuModel
|
||||
.transform(testDf)
|
||||
.collect())
|
||||
assert(thrown.getMessage.contains("Gpu transform requires features columns. " +
|
||||
"please refer to setFeaturesCols"))
|
||||
assert(thrown.getMessage.contains("Failed to find a default value for featuresCols"))
|
||||
|
||||
val left = cpuModel
|
||||
.setFeaturesCols(featureNames)
|
||||
.setFeaturesCol(featureNames)
|
||||
.transform(testDf)
|
||||
.collect()
|
||||
|
||||
val right = cpuModelFromFile
|
||||
.setFeaturesCols(featureNames)
|
||||
.setFeaturesCol(featureNames)
|
||||
.transform(testDf)
|
||||
.collect()
|
||||
|
||||
@@ -173,7 +173,7 @@ class GpuXGBoostRegressorSuite extends GpuTestSuite {
|
||||
.csv(getResourcePath("/rank.train.csv")).randomSplit(Array(0.7, 0.3), seed = 1)
|
||||
|
||||
val classifier = new XGBoostRegressor(xgbParam)
|
||||
.setFeaturesCols(featureNames)
|
||||
.setFeaturesCol(featureNames)
|
||||
.setLabelCol(labelName)
|
||||
.setTreeMethod("gpu_hist")
|
||||
classifier.fit(rawInput)
|
||||
@@ -191,17 +191,16 @@ class GpuXGBoostRegressorSuite extends GpuTestSuite {
|
||||
val featureColName = "feature_col"
|
||||
val vectorAssembler = new VectorAssembler()
|
||||
.setHandleInvalid("keep")
|
||||
.setInputCols(featureNames.toArray)
|
||||
.setInputCols(featureNames)
|
||||
.setOutputCol(featureColName)
|
||||
val testDf = vectorAssembler.transform(rawInput).select(featureColName, labelName)
|
||||
|
||||
// Since GPU model does not know the information about the features col name that CPU
|
||||
// transform pipeline requires. End user needs to setFeaturesCol in the model manually
|
||||
val thrown = intercept[IllegalArgumentException](
|
||||
intercept[IllegalArgumentException](
|
||||
gpuModel
|
||||
.transform(testDf)
|
||||
.collect())
|
||||
assert(thrown.getMessage.contains("features does not exist"))
|
||||
|
||||
val left = gpuModel
|
||||
.setFeaturesCol(featureColName)
|
||||
|
||||
@@ -6,7 +6,7 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j-spark_2.12</artifactId>
|
||||
<build>
|
||||
@@ -24,7 +24,7 @@
|
||||
<dependency>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost4j_${scala.binary.version}</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.spark</groupId>
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2021 by Contributors
|
||||
Copyright (c) 2021-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -35,8 +35,10 @@ import org.apache.commons.logging.LogFactory
|
||||
|
||||
import org.apache.spark.TaskContext
|
||||
import org.apache.spark.broadcast.Broadcast
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
import org.apache.spark.ml.{Estimator, Model, PipelineStage}
|
||||
import org.apache.spark.ml.linalg.Vector
|
||||
import org.apache.spark.ml.linalg.xgboost.XGBoostSchemaUtils
|
||||
import org.apache.spark.sql.types.{ArrayType, FloatType, StructField, StructType}
|
||||
import org.apache.spark.storage.StorageLevel
|
||||
|
||||
@@ -94,25 +96,27 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/**
|
||||
* Convert the Dataset[_] to RDD[Watches] which will be fed to XGBoost
|
||||
* Convert the Dataset[_] to RDD[() => Watches] which will be fed to XGBoost
|
||||
*
|
||||
* @param estimator supports XGBoostClassifier and XGBoostRegressor
|
||||
* @param dataset the training data
|
||||
* @param params all user defined and defaulted params
|
||||
* @return [[XGBoostExecutionParams]] => (RDD[[Watches]], Option[ RDD[_] ])
|
||||
* RDD[Watches] will be used as the training input
|
||||
* @return [[XGBoostExecutionParams]] => (Boolean, RDD[[() => Watches]], Option[ RDD[_] ])
|
||||
* Boolean if building DMatrix in rabit context
|
||||
* RDD[() => Watches] will be used as the training input
|
||||
* Option[RDD[_]\] is the optional cached RDD
|
||||
*/
|
||||
override def buildDatasetToRDD(
|
||||
estimator: Estimator[_],
|
||||
dataset: Dataset[_],
|
||||
params: Map[String, Any]): XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]]) = {
|
||||
params: Map[String, Any]): XGBoostExecutionParams =>
|
||||
(Boolean, RDD[() => Watches], Option[RDD[_]]) = {
|
||||
|
||||
if (optionProvider.isDefined && optionProvider.get.providerEnabled(Some(dataset))) {
|
||||
return optionProvider.get.buildDatasetToRDD(estimator, dataset, params)
|
||||
}
|
||||
|
||||
val (packedParams, evalSet) = estimator match {
|
||||
val (packedParams, evalSet, xgbInput) = estimator match {
|
||||
case est: XGBoostEstimatorCommon =>
|
||||
// get weight column, if weight is not defined, default to lit(1.0)
|
||||
val weight = if (!est.isDefined(est.weightCol) || est.getWeightCol.isEmpty) {
|
||||
@@ -136,20 +140,28 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
|
||||
}
|
||||
|
||||
(PackedParams(col(est.getLabelCol), col(est.getFeaturesCol), weight, baseMargin, group,
|
||||
est.getNumWorkers, est.needDeterministicRepartitioning), est.getEvalSets(params))
|
||||
val (xgbInput, featuresName) = est.vectorize(dataset)
|
||||
|
||||
val evalSets = est.getEvalSets(params).transform((_, df) => {
|
||||
val (dfTransformed, _) = est.vectorize(df)
|
||||
dfTransformed
|
||||
})
|
||||
|
||||
(PackedParams(col(est.getLabelCol), col(featuresName), weight, baseMargin, group,
|
||||
est.getNumWorkers, est.needDeterministicRepartitioning), evalSets, xgbInput)
|
||||
|
||||
case _ => throw new RuntimeException("Unsupporting " + estimator)
|
||||
}
|
||||
|
||||
// transform the training Dataset[_] to RDD[XGBLabeledPoint]
|
||||
val trainingSet: RDD[XGBLabeledPoint] = DataUtils.convertDataFrameToXGBLabeledPointRDDs(
|
||||
packedParams, dataset.asInstanceOf[DataFrame]).head
|
||||
packedParams, xgbInput.asInstanceOf[DataFrame]).head
|
||||
|
||||
// transform the eval Dataset[_] to RDD[XGBLabeledPoint]
|
||||
val evalRDDMap = evalSet.map {
|
||||
case (name, dataFrame) => (name,
|
||||
DataUtils.convertDataFrameToXGBLabeledPointRDDs(packedParams, dataFrame).head)
|
||||
DataUtils.convertDataFrameToXGBLabeledPointRDDs(packedParams,
|
||||
dataFrame.asInstanceOf[DataFrame]).head)
|
||||
}
|
||||
|
||||
val hasGroup = packedParams.group.map(_ != defaultGroupColumn).getOrElse(false)
|
||||
@@ -160,12 +172,12 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
val cachedRDD = if (xgbExecParams.cacheTrainingSet) {
|
||||
Some(trainingData.persist(StorageLevel.MEMORY_AND_DISK))
|
||||
} else None
|
||||
(trainForRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
(false, trainForRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
case Right(trainingData) =>
|
||||
val cachedRDD = if (xgbExecParams.cacheTrainingSet) {
|
||||
Some(trainingData.persist(StorageLevel.MEMORY_AND_DISK))
|
||||
} else None
|
||||
(trainForNonRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
(false, trainForNonRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
}
|
||||
|
||||
}
|
||||
@@ -184,11 +196,11 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/** get the necessary parameters */
|
||||
val (booster, inferBatchSize, featuresCol, useExternalMemory, missing, allowNonZeroForMissing,
|
||||
predictFunc, schema) =
|
||||
val (booster, inferBatchSize, xgbInput, featuresCol, useExternalMemory, missing,
|
||||
allowNonZeroForMissing, predictFunc, schema) =
|
||||
model match {
|
||||
case m: XGBoostClassificationModel =>
|
||||
|
||||
val (xgbInput, featuresName) = m.vectorize(dataset)
|
||||
// predict and turn to Row
|
||||
val predictFunc =
|
||||
(broadcastBooster: Broadcast[Booster], dm: DMatrix, originalRowItr: Iterator[Row]) => {
|
||||
@@ -199,7 +211,7 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
// prepare the final Schema
|
||||
var schema = StructType(dataset.schema.fields ++
|
||||
var schema = StructType(xgbInput.schema.fields ++
|
||||
Seq(StructField(name = XGBoostClassificationModel._rawPredictionCol, dataType =
|
||||
ArrayType(FloatType, containsNull = false), nullable = false)) ++
|
||||
Seq(StructField(name = XGBoostClassificationModel._probabilityCol, dataType =
|
||||
@@ -214,11 +226,12 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
ArrayType(FloatType, containsNull = false), nullable = false))
|
||||
}
|
||||
|
||||
(m._booster, m.getInferBatchSize, m.getFeaturesCol, m.getUseExternalMemory, m.getMissing,
|
||||
m.getAllowNonZeroForMissingValue, predictFunc, schema)
|
||||
(m._booster, m.getInferBatchSize, xgbInput, featuresName, m.getUseExternalMemory,
|
||||
m.getMissing, m.getAllowNonZeroForMissingValue, predictFunc, schema)
|
||||
|
||||
case m: XGBoostRegressionModel =>
|
||||
// predict and turn to Row
|
||||
val (xgbInput, featuresName) = m.vectorize(dataset)
|
||||
val predictFunc =
|
||||
(broadcastBooster: Broadcast[Booster], dm: DMatrix, originalRowItr: Iterator[Row]) => {
|
||||
val Array(rawPredictionItr, predLeafItr, predContribItr) =
|
||||
@@ -227,7 +240,7 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
// prepare the final Schema
|
||||
var schema = StructType(dataset.schema.fields ++
|
||||
var schema = StructType(xgbInput.schema.fields ++
|
||||
Seq(StructField(name = XGBoostRegressionModel._originalPredictionCol, dataType =
|
||||
ArrayType(FloatType, containsNull = false), nullable = false)))
|
||||
|
||||
@@ -240,14 +253,14 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
ArrayType(FloatType, containsNull = false), nullable = false))
|
||||
}
|
||||
|
||||
(m._booster, m.getInferBatchSize, m.getFeaturesCol, m.getUseExternalMemory, m.getMissing,
|
||||
m.getAllowNonZeroForMissingValue, predictFunc, schema)
|
||||
(m._booster, m.getInferBatchSize, xgbInput, featuresName, m.getUseExternalMemory,
|
||||
m.getMissing, m.getAllowNonZeroForMissingValue, predictFunc, schema)
|
||||
}
|
||||
|
||||
val bBooster = dataset.sparkSession.sparkContext.broadcast(booster)
|
||||
val appName = dataset.sparkSession.sparkContext.appName
|
||||
val bBooster = xgbInput.sparkSession.sparkContext.broadcast(booster)
|
||||
val appName = xgbInput.sparkSession.sparkContext.appName
|
||||
|
||||
val resultRDD = dataset.asInstanceOf[Dataset[Row]].rdd.mapPartitions { rowIterator =>
|
||||
val resultRDD = xgbInput.asInstanceOf[Dataset[Row]].rdd.mapPartitions { rowIterator =>
|
||||
new AbstractIterator[Row] {
|
||||
private var batchCnt = 0
|
||||
|
||||
@@ -295,22 +308,23 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
bBooster.unpersist(blocking = false)
|
||||
dataset.sparkSession.createDataFrame(resultRDD, schema)
|
||||
xgbInput.sparkSession.createDataFrame(resultRDD, schema)
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Converting the RDD[XGBLabeledPoint] to the function to build RDD[Watches]
|
||||
* Converting the RDD[XGBLabeledPoint] to the function to build RDD[() => Watches]
|
||||
*
|
||||
* @param trainingSet the input training RDD[XGBLabeledPoint]
|
||||
* @param evalRDDMap the eval set
|
||||
* @param hasGroup if has group
|
||||
* @return function to build (RDD[Watches], the cached RDD)
|
||||
* @return function to build (RDD[() => Watches], the cached RDD)
|
||||
*/
|
||||
private[spark] def buildRDDLabeledPointToRDDWatches(
|
||||
trainingSet: RDD[XGBLabeledPoint],
|
||||
evalRDDMap: Map[String, RDD[XGBLabeledPoint]] = Map(),
|
||||
hasGroup: Boolean = false): XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]]) = {
|
||||
hasGroup: Boolean = false):
|
||||
XGBoostExecutionParams => (Boolean, RDD[() => Watches], Option[RDD[_]]) = {
|
||||
|
||||
xgbExecParams: XGBoostExecutionParams =>
|
||||
composeInputData(trainingSet, hasGroup, xgbExecParams.numWorkers) match {
|
||||
@@ -318,12 +332,12 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
val cachedRDD = if (xgbExecParams.cacheTrainingSet) {
|
||||
Some(trainingData.persist(StorageLevel.MEMORY_AND_DISK))
|
||||
} else None
|
||||
(trainForRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
(false, trainForRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
case Right(trainingData) =>
|
||||
val cachedRDD = if (xgbExecParams.cacheTrainingSet) {
|
||||
Some(trainingData.persist(StorageLevel.MEMORY_AND_DISK))
|
||||
} else None
|
||||
(trainForNonRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
(false, trainForNonRanking(trainingData, xgbExecParams, evalRDDMap), cachedRDD)
|
||||
}
|
||||
}
|
||||
|
||||
@@ -363,34 +377,34 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/**
|
||||
* Build RDD[Watches] for Ranking
|
||||
* Build RDD[() => Watches] for Ranking
|
||||
* @param trainingData the training data RDD
|
||||
* @param xgbExecutionParams xgboost execution params
|
||||
* @param evalSetsMap the eval RDD
|
||||
* @return RDD[Watches]
|
||||
* @return RDD[() => Watches]
|
||||
*/
|
||||
private def trainForRanking(
|
||||
trainingData: RDD[Array[XGBLabeledPoint]],
|
||||
xgbExecutionParam: XGBoostExecutionParams,
|
||||
evalSetsMap: Map[String, RDD[XGBLabeledPoint]]): RDD[Watches] = {
|
||||
evalSetsMap: Map[String, RDD[XGBLabeledPoint]]): RDD[() => Watches] = {
|
||||
if (evalSetsMap.isEmpty) {
|
||||
trainingData.mapPartitions(labeledPointGroups => {
|
||||
val watches = Watches.buildWatchesWithGroup(xgbExecutionParam,
|
||||
val buildWatches = () => Watches.buildWatchesWithGroup(xgbExecutionParam,
|
||||
DataUtils.processMissingValuesWithGroup(labeledPointGroups, xgbExecutionParam.missing,
|
||||
xgbExecutionParam.allowNonZeroForMissing),
|
||||
getCacheDirName(xgbExecutionParam.useExternalMemory))
|
||||
Iterator.single(watches)
|
||||
Iterator.single(buildWatches)
|
||||
}).cache()
|
||||
} else {
|
||||
coPartitionGroupSets(trainingData, evalSetsMap, xgbExecutionParam.numWorkers).mapPartitions(
|
||||
labeledPointGroupSets => {
|
||||
val watches = Watches.buildWatchesWithGroup(
|
||||
val buildWatches = () => Watches.buildWatchesWithGroup(
|
||||
labeledPointGroupSets.map {
|
||||
case (name, iter) => (name, DataUtils.processMissingValuesWithGroup(iter,
|
||||
xgbExecutionParam.missing, xgbExecutionParam.allowNonZeroForMissing))
|
||||
},
|
||||
getCacheDirName(xgbExecutionParam.useExternalMemory))
|
||||
Iterator.single(watches)
|
||||
Iterator.single(buildWatches)
|
||||
}).cache()
|
||||
}
|
||||
}
|
||||
@@ -451,35 +465,35 @@ object PreXGBoost extends PreXGBoostProvider {
|
||||
}
|
||||
|
||||
/**
|
||||
* Build RDD[Watches] for Non-Ranking
|
||||
* Build RDD[() => Watches] for Non-Ranking
|
||||
* @param trainingData the training data RDD
|
||||
* @param xgbExecutionParams xgboost execution params
|
||||
* @param evalSetsMap the eval RDD
|
||||
* @return RDD[Watches]
|
||||
* @return RDD[() => Watches]
|
||||
*/
|
||||
private def trainForNonRanking(
|
||||
trainingData: RDD[XGBLabeledPoint],
|
||||
xgbExecutionParams: XGBoostExecutionParams,
|
||||
evalSetsMap: Map[String, RDD[XGBLabeledPoint]]): RDD[Watches] = {
|
||||
evalSetsMap: Map[String, RDD[XGBLabeledPoint]]): RDD[() => Watches] = {
|
||||
if (evalSetsMap.isEmpty) {
|
||||
trainingData.mapPartitions { labeledPoints => {
|
||||
val watches = Watches.buildWatches(xgbExecutionParams,
|
||||
val buildWatches = () => Watches.buildWatches(xgbExecutionParams,
|
||||
DataUtils.processMissingValues(labeledPoints, xgbExecutionParams.missing,
|
||||
xgbExecutionParams.allowNonZeroForMissing),
|
||||
getCacheDirName(xgbExecutionParams.useExternalMemory))
|
||||
Iterator.single(watches)
|
||||
Iterator.single(buildWatches)
|
||||
}}.cache()
|
||||
} else {
|
||||
coPartitionNoGroupSets(trainingData, evalSetsMap, xgbExecutionParams.numWorkers).
|
||||
mapPartitions {
|
||||
nameAndLabeledPointSets =>
|
||||
val watches = Watches.buildWatches(
|
||||
val buildWatches = () => Watches.buildWatches(
|
||||
nameAndLabeledPointSets.map {
|
||||
case (name, iter) => (name, DataUtils.processMissingValues(iter,
|
||||
xgbExecutionParams.missing, xgbExecutionParams.allowNonZeroForMissing))
|
||||
},
|
||||
getCacheDirName(xgbExecutionParams.useExternalMemory))
|
||||
Iterator.single(watches)
|
||||
Iterator.single(buildWatches)
|
||||
}.cache()
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2021 by Contributors
|
||||
Copyright (c) 2021-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -45,19 +45,21 @@ private[scala] trait PreXGBoostProvider {
|
||||
def transformSchema(xgboostEstimator: XGBoostEstimatorCommon, schema: StructType): StructType
|
||||
|
||||
/**
|
||||
* Convert the Dataset[_] to RDD[Watches] which will be fed to XGBoost
|
||||
* Convert the Dataset[_] to RDD[() => Watches] which will be fed to XGBoost
|
||||
*
|
||||
* @param estimator supports XGBoostClassifier and XGBoostRegressor
|
||||
* @param dataset the training data
|
||||
* @param params all user defined and defaulted params
|
||||
* @return [[XGBoostExecutionParams]] => (RDD[[Watches]], Option[ RDD[_] ])
|
||||
* RDD[Watches] will be used as the training input
|
||||
* @return [[XGBoostExecutionParams]] => (Boolean, RDD[[() => Watches]], Option[ RDD[_] ])
|
||||
* Boolean if building DMatrix in rabit context
|
||||
* RDD[() => Watches] will be used as the training input to build DMatrix
|
||||
* Option[ RDD[_] ] is the optional cached RDD
|
||||
*/
|
||||
def buildDatasetToRDD(
|
||||
estimator: Estimator[_],
|
||||
dataset: Dataset[_],
|
||||
params: Map[String, Any]): XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]])
|
||||
params: Map[String, Any]):
|
||||
XGBoostExecutionParams => (Boolean, RDD[() => Watches], Option[RDD[_]])
|
||||
|
||||
/**
|
||||
* Transform Dataset
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014,2021 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -21,6 +21,7 @@ import java.io.File
|
||||
import scala.collection.mutable
|
||||
import scala.util.Random
|
||||
import scala.collection.JavaConverters._
|
||||
|
||||
import ml.dmlc.xgboost4j.java.{IRabitTracker, Rabit, XGBoostError, RabitTracker => PyRabitTracker}
|
||||
import ml.dmlc.xgboost4j.scala.rabit.RabitTracker
|
||||
import ml.dmlc.xgboost4j.scala.spark.params.LearningTaskParams
|
||||
@@ -30,8 +31,9 @@ import ml.dmlc.xgboost4j.{LabeledPoint => XGBLabeledPoint}
|
||||
import org.apache.commons.io.FileUtils
|
||||
import org.apache.commons.logging.LogFactory
|
||||
import org.apache.hadoop.fs.FileSystem
|
||||
|
||||
import org.apache.spark.rdd.RDD
|
||||
import org.apache.spark.{SparkContext, SparkParallelismTracker, TaskContext}
|
||||
import org.apache.spark.{SparkContext, TaskContext}
|
||||
import org.apache.spark.sql.SparkSession
|
||||
|
||||
/**
|
||||
@@ -46,8 +48,14 @@ import org.apache.spark.sql.SparkSession
|
||||
* the Python Rabit tracker (in dmlc_core), whereas the latter is implemented
|
||||
* in Scala without Python components, and with full support of timeouts.
|
||||
* The Scala implementation is currently experimental, use at your own risk.
|
||||
*
|
||||
* @param hostIp The Rabit Tracker host IP address which is only used for python implementation.
|
||||
* This is only needed if the host IP cannot be automatically guessed.
|
||||
* @param pythonExec The python executed path for Rabit Tracker,
|
||||
* which is only used for python implementation.
|
||||
*/
|
||||
case class TrackerConf(workerConnectionTimeout: Long, trackerImpl: String )
|
||||
case class TrackerConf(workerConnectionTimeout: Long, trackerImpl: String,
|
||||
hostIp: String = "", pythonExec: String = "")
|
||||
|
||||
object TrackerConf {
|
||||
def apply(): TrackerConf = TrackerConf(0L, "python")
|
||||
@@ -73,8 +81,7 @@ private[scala] case class XGBoostExecutionParams(
|
||||
earlyStoppingParams: XGBoostExecutionEarlyStoppingParams,
|
||||
cacheTrainingSet: Boolean,
|
||||
treeMethod: Option[String],
|
||||
isLocal: Boolean,
|
||||
killSparkContextOnWorkerFailure: Boolean) {
|
||||
isLocal: Boolean) {
|
||||
|
||||
private var rawParamMap: Map[String, Any] = _
|
||||
|
||||
@@ -218,9 +225,6 @@ private[this] class XGBoostExecutionParamsFactory(rawParams: Map[String, Any], s
|
||||
val cacheTrainingSet = overridedParams.getOrElse("cache_training_set", false)
|
||||
.asInstanceOf[Boolean]
|
||||
|
||||
val killSparkContext = overridedParams.getOrElse("kill_spark_context_on_worker_failure", true)
|
||||
.asInstanceOf[Boolean]
|
||||
|
||||
val xgbExecParam = XGBoostExecutionParams(nWorkers, round, useExternalMemory, obj, eval,
|
||||
missing, allowNonZeroForMissing, trackerConf,
|
||||
timeoutRequestWorkers,
|
||||
@@ -229,8 +233,7 @@ private[this] class XGBoostExecutionParamsFactory(rawParams: Map[String, Any], s
|
||||
xgbExecEarlyStoppingParams,
|
||||
cacheTrainingSet,
|
||||
treeMethod,
|
||||
isLocal,
|
||||
killSparkContext)
|
||||
isLocal)
|
||||
xgbExecParam.setRawParamMap(overridedParams)
|
||||
xgbExecParam
|
||||
}
|
||||
@@ -277,13 +280,8 @@ object XGBoost extends Serializable {
|
||||
}
|
||||
}
|
||||
|
||||
private def buildDistributedBooster(
|
||||
watches: Watches,
|
||||
xgbExecutionParam: XGBoostExecutionParams,
|
||||
rabitEnv: java.util.Map[String, String],
|
||||
obj: ObjectiveTrait,
|
||||
eval: EvalTrait,
|
||||
prevBooster: Booster): Iterator[(Booster, Map[String, Array[Float]])] = {
|
||||
private def buildWatchesAndCheck(buildWatchesFun: () => Watches): Watches = {
|
||||
val watches = buildWatchesFun()
|
||||
// to workaround the empty partitions in training dataset,
|
||||
// this might not be the best efficient implementation, see
|
||||
// (https://github.com/dmlc/xgboost/issues/1277)
|
||||
@@ -292,14 +290,39 @@ object XGBoost extends Serializable {
|
||||
s"detected an empty partition in the training data, partition ID:" +
|
||||
s" ${TaskContext.getPartitionId()}")
|
||||
}
|
||||
watches
|
||||
}
|
||||
|
||||
private def buildDistributedBooster(
|
||||
buildDMatrixInRabit: Boolean,
|
||||
buildWatches: () => Watches,
|
||||
xgbExecutionParam: XGBoostExecutionParams,
|
||||
rabitEnv: java.util.Map[String, String],
|
||||
obj: ObjectiveTrait,
|
||||
eval: EvalTrait,
|
||||
prevBooster: Booster): Iterator[(Booster, Map[String, Array[Float]])] = {
|
||||
|
||||
var watches: Watches = null
|
||||
if (!buildDMatrixInRabit) {
|
||||
// for CPU pipeline, we need to build DMatrix out of rabit context
|
||||
watches = buildWatchesAndCheck(buildWatches)
|
||||
}
|
||||
|
||||
val taskId = TaskContext.getPartitionId().toString
|
||||
val attempt = TaskContext.get().attemptNumber.toString
|
||||
rabitEnv.put("DMLC_TASK_ID", taskId)
|
||||
rabitEnv.put("DMLC_NUM_ATTEMPT", attempt)
|
||||
val numRounds = xgbExecutionParam.numRounds
|
||||
val makeCheckpoint = xgbExecutionParam.checkpointParam.isDefined && taskId.toInt == 0
|
||||
|
||||
try {
|
||||
Rabit.init(rabitEnv)
|
||||
|
||||
if (buildDMatrixInRabit) {
|
||||
// for GPU pipeline, we need to move dmatrix building into rabit context
|
||||
watches = buildWatchesAndCheck(buildWatches)
|
||||
}
|
||||
|
||||
val numEarlyStoppingRounds = xgbExecutionParam.earlyStoppingParams.numEarlyStoppingRounds
|
||||
val metrics = Array.tabulate(watches.size)(_ => Array.ofDim[Float](numRounds))
|
||||
val externalCheckpointParams = xgbExecutionParam.checkpointParam
|
||||
@@ -325,24 +348,33 @@ object XGBoost extends Serializable {
|
||||
watches.toMap, metrics, obj, eval,
|
||||
earlyStoppingRound = numEarlyStoppingRounds, prevBooster)
|
||||
}
|
||||
Iterator(booster -> watches.toMap.keys.zip(metrics).toMap)
|
||||
if (TaskContext.get().partitionId() == 0) {
|
||||
Iterator(booster -> watches.toMap.keys.zip(metrics).toMap)
|
||||
} else {
|
||||
Iterator.empty
|
||||
}
|
||||
} catch {
|
||||
case xgbException: XGBoostError =>
|
||||
logger.error(s"XGBooster worker $taskId has failed $attempt times due to ", xgbException)
|
||||
throw xgbException
|
||||
} finally {
|
||||
Rabit.shutdown()
|
||||
watches.delete()
|
||||
if (watches != null) watches.delete()
|
||||
}
|
||||
}
|
||||
|
||||
private def startTracker(nWorkers: Int, trackerConf: TrackerConf): IRabitTracker = {
|
||||
/** visiable for testing */
|
||||
private[scala] def getTracker(nWorkers: Int, trackerConf: TrackerConf): IRabitTracker = {
|
||||
val tracker: IRabitTracker = trackerConf.trackerImpl match {
|
||||
case "scala" => new RabitTracker(nWorkers)
|
||||
case "python" => new PyRabitTracker(nWorkers)
|
||||
case "python" => new PyRabitTracker(nWorkers, trackerConf.hostIp, trackerConf.pythonExec)
|
||||
case _ => new PyRabitTracker(nWorkers)
|
||||
}
|
||||
tracker
|
||||
}
|
||||
|
||||
private def startTracker(nWorkers: Int, trackerConf: TrackerConf): IRabitTracker = {
|
||||
val tracker = getTracker(nWorkers, trackerConf)
|
||||
require(tracker.start(trackerConf.workerConnectionTimeout), "FAULT: Failed to start tracker")
|
||||
tracker
|
||||
}
|
||||
@@ -353,7 +385,7 @@ object XGBoost extends Serializable {
|
||||
@throws(classOf[XGBoostError])
|
||||
private[spark] def trainDistributed(
|
||||
sc: SparkContext,
|
||||
buildTrainingData: XGBoostExecutionParams => (RDD[Watches], Option[RDD[_]]),
|
||||
buildTrainingData: XGBoostExecutionParams => (Boolean, RDD[() => Watches], Option[RDD[_]]),
|
||||
params: Map[String, Any]):
|
||||
(Booster, Map[String, Array[Float]]) = {
|
||||
|
||||
@@ -372,50 +404,36 @@ object XGBoost extends Serializable {
|
||||
}.orNull
|
||||
|
||||
// Get the training data RDD and the cachedRDD
|
||||
val (trainingRDD, optionalCachedRDD) = buildTrainingData(xgbExecParams)
|
||||
val (buildDMatrixInRabit, trainingRDD, optionalCachedRDD) = buildTrainingData(xgbExecParams)
|
||||
|
||||
try {
|
||||
// Train for every ${savingRound} rounds and save the partially completed booster
|
||||
val tracker = startTracker(xgbExecParams.numWorkers, xgbExecParams.trackerConf)
|
||||
val (booster, metrics) = try {
|
||||
val parallelismTracker = new SparkParallelismTracker(sc,
|
||||
xgbExecParams.timeoutRequestWorkers,
|
||||
xgbExecParams.numWorkers,
|
||||
xgbExecParams.killSparkContextOnWorkerFailure)
|
||||
|
||||
tracker.getWorkerEnvs().putAll(xgbRabitParams)
|
||||
val rabitEnv = tracker.getWorkerEnvs
|
||||
|
||||
val boostersAndMetrics = trainingRDD.mapPartitions { iter => {
|
||||
var optionWatches: Option[Watches] = None
|
||||
val boostersAndMetrics = trainingRDD.barrier().mapPartitions { iter => {
|
||||
var optionWatches: Option[() => Watches] = None
|
||||
|
||||
// take the first Watches to train
|
||||
if (iter.hasNext) {
|
||||
optionWatches = Some(iter.next())
|
||||
}
|
||||
|
||||
optionWatches.map { watches => buildDistributedBooster(watches, xgbExecParams, rabitEnv,
|
||||
xgbExecParams.obj, xgbExecParams.eval, prevBooster)}
|
||||
optionWatches.map { buildWatches => buildDistributedBooster(buildDMatrixInRabit,
|
||||
buildWatches, xgbExecParams, rabitEnv, xgbExecParams.obj,
|
||||
xgbExecParams.eval, prevBooster)}
|
||||
.getOrElse(throw new RuntimeException("No Watches to train"))
|
||||
|
||||
}}.cache()
|
||||
|
||||
val sparkJobThread = new Thread() {
|
||||
override def run() {
|
||||
// force the job
|
||||
boostersAndMetrics.foreachPartition(() => _)
|
||||
}
|
||||
}
|
||||
sparkJobThread.setUncaughtExceptionHandler(tracker)
|
||||
|
||||
val trackerReturnVal = parallelismTracker.execute {
|
||||
sparkJobThread.start()
|
||||
tracker.waitFor(0L)
|
||||
}
|
||||
}}
|
||||
|
||||
val (booster, metrics) = boostersAndMetrics.collect()(0)
|
||||
val trackerReturnVal = tracker.waitFor(0L)
|
||||
logger.info(s"Rabit returns with exit code $trackerReturnVal")
|
||||
val (booster, metrics) = postTrackerReturnProcessing(trackerReturnVal,
|
||||
boostersAndMetrics, sparkJobThread)
|
||||
if (trackerReturnVal != 0) {
|
||||
throw new XGBoostError("XGBoostModel training failed.")
|
||||
}
|
||||
(booster, metrics)
|
||||
} finally {
|
||||
tracker.stop()
|
||||
@@ -435,42 +453,12 @@ object XGBoost extends Serializable {
|
||||
case t: Throwable =>
|
||||
// if the job was aborted due to an exception
|
||||
logger.error("the job was aborted due to ", t)
|
||||
if (xgbExecParams.killSparkContextOnWorkerFailure) {
|
||||
sc.stop()
|
||||
}
|
||||
throw t
|
||||
} finally {
|
||||
optionalCachedRDD.foreach(_.unpersist())
|
||||
}
|
||||
}
|
||||
|
||||
private def postTrackerReturnProcessing(
|
||||
trackerReturnVal: Int,
|
||||
distributedBoostersAndMetrics: RDD[(Booster, Map[String, Array[Float]])],
|
||||
sparkJobThread: Thread): (Booster, Map[String, Array[Float]]) = {
|
||||
if (trackerReturnVal == 0) {
|
||||
// Copies of the final booster and the corresponding metrics
|
||||
// reside in each partition of the `distributedBoostersAndMetrics`.
|
||||
// Any of them can be used to create the model.
|
||||
// it's safe to block here forever, as the tracker has returned successfully, and the Spark
|
||||
// job should have finished, there is no reason for the thread cannot return
|
||||
sparkJobThread.join()
|
||||
val (booster, metrics) = distributedBoostersAndMetrics.first()
|
||||
distributedBoostersAndMetrics.unpersist(false)
|
||||
(booster, metrics)
|
||||
} else {
|
||||
try {
|
||||
if (sparkJobThread.isAlive) {
|
||||
sparkJobThread.interrupt()
|
||||
}
|
||||
} catch {
|
||||
case _: InterruptedException =>
|
||||
logger.info("spark job thread is interrupted")
|
||||
}
|
||||
throw new XGBoostError("XGBoostModel training failed")
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
class Watches private[scala] (
|
||||
|
||||
@@ -144,13 +144,6 @@ class XGBoostClassifier (
|
||||
def setSinglePrecisionHistogram(value: Boolean): this.type =
|
||||
set(singlePrecisionHistogram, value)
|
||||
|
||||
/**
|
||||
* This API is only used in GPU train pipeline of xgboost4j-spark-gpu, which requires
|
||||
* all feature columns must be numeric types.
|
||||
*/
|
||||
def setFeaturesCol(value: Array[String]): this.type =
|
||||
set(featuresCols, value)
|
||||
|
||||
// called at the start of fit/train when 'eval_metric' is not defined
|
||||
private def setupDefaultEvalMetric(): String = {
|
||||
require(isDefined(objective), "Users must set \'objective\' via xgboostParams.")
|
||||
@@ -165,7 +158,12 @@ class XGBoostClassifier (
|
||||
|
||||
// Callback from PreXGBoost
|
||||
private[spark] def transformSchemaInternal(schema: StructType): StructType = {
|
||||
super.transformSchema(schema)
|
||||
if (isFeaturesColSet(schema)) {
|
||||
// User has vectorized the features into VectorUDT.
|
||||
super.transformSchema(schema)
|
||||
} else {
|
||||
transformSchemaWithFeaturesCols(true, schema)
|
||||
}
|
||||
}
|
||||
|
||||
override def transformSchema(schema: StructType): StructType = {
|
||||
@@ -260,13 +258,6 @@ class XGBoostClassificationModel private[ml](
|
||||
|
||||
def setInferBatchSize(value: Int): this.type = set(inferBatchSize, value)
|
||||
|
||||
/**
|
||||
* This API is only used in GPU train pipeline of xgboost4j-spark-gpu, which requires
|
||||
* all feature columns must be numeric types.
|
||||
*/
|
||||
def setFeaturesCol(value: Array[String]): this.type =
|
||||
set(featuresCols, value)
|
||||
|
||||
/**
|
||||
* Single instance prediction.
|
||||
* Note: The performance is not ideal, use it carefully!
|
||||
@@ -359,7 +350,12 @@ class XGBoostClassificationModel private[ml](
|
||||
}
|
||||
|
||||
private[spark] def transformSchemaInternal(schema: StructType): StructType = {
|
||||
super.transformSchema(schema)
|
||||
if (isFeaturesColSet(schema)) {
|
||||
// User has vectorized the features into VectorUDT.
|
||||
super.transformSchema(schema)
|
||||
} else {
|
||||
transformSchemaWithFeaturesCols(false, schema)
|
||||
}
|
||||
}
|
||||
|
||||
override def transformSchema(schema: StructType): StructType = {
|
||||
@@ -385,8 +381,6 @@ class XGBoostClassificationModel private[ml](
|
||||
Vectors.dense(rawPredictions)
|
||||
}
|
||||
|
||||
|
||||
|
||||
if ($(rawPredictionCol).nonEmpty) {
|
||||
outputData = outputData
|
||||
.withColumn(getRawPredictionCol, rawPredictionUDF(col(_rawPredictionCol)))
|
||||
|
||||
@@ -146,13 +146,6 @@ class XGBoostRegressor (
|
||||
def setSinglePrecisionHistogram(value: Boolean): this.type =
|
||||
set(singlePrecisionHistogram, value)
|
||||
|
||||
/**
|
||||
* This API is only used in GPU train pipeline of xgboost4j-spark-gpu, which requires
|
||||
* all feature columns must be numeric types.
|
||||
*/
|
||||
def setFeaturesCols(value: Array[String]): this.type =
|
||||
set(featuresCols, value)
|
||||
|
||||
// called at the start of fit/train when 'eval_metric' is not defined
|
||||
private def setupDefaultEvalMetric(): String = {
|
||||
require(isDefined(objective), "Users must set \'objective\' via xgboostParams.")
|
||||
@@ -164,7 +157,12 @@ class XGBoostRegressor (
|
||||
}
|
||||
|
||||
private[spark] def transformSchemaInternal(schema: StructType): StructType = {
|
||||
super.transformSchema(schema)
|
||||
if (isFeaturesColSet(schema)) {
|
||||
// User has vectorized the features into VectorUDT.
|
||||
super.transformSchema(schema)
|
||||
} else {
|
||||
transformSchemaWithFeaturesCols(false, schema)
|
||||
}
|
||||
}
|
||||
|
||||
override def transformSchema(schema: StructType): StructType = {
|
||||
@@ -253,13 +251,6 @@ class XGBoostRegressionModel private[ml] (
|
||||
|
||||
def setInferBatchSize(value: Int): this.type = set(inferBatchSize, value)
|
||||
|
||||
/**
|
||||
* This API is only used in GPU train pipeline of xgboost4j-spark-gpu, which requires
|
||||
* all feature columns must be numeric types.
|
||||
*/
|
||||
def setFeaturesCols(value: Array[String]): this.type =
|
||||
set(featuresCols, value)
|
||||
|
||||
/**
|
||||
* Single instance prediction.
|
||||
* Note: The performance is not ideal, use it carefully!
|
||||
@@ -331,7 +322,12 @@ class XGBoostRegressionModel private[ml] (
|
||||
}
|
||||
|
||||
private[spark] def transformSchemaInternal(schema: StructType): StructType = {
|
||||
super.transformSchema(schema)
|
||||
if (isFeaturesColSet(schema)) {
|
||||
// User has vectorized the features into VectorUDT.
|
||||
super.transformSchema(schema)
|
||||
} else {
|
||||
transformSchemaWithFeaturesCols(false, schema)
|
||||
}
|
||||
}
|
||||
|
||||
override def transformSchema(schema: StructType): StructType = {
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,18 +16,22 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark.params
|
||||
|
||||
import ml.dmlc.xgboost4j.scala.spark
|
||||
import org.apache.commons.logging.LogFactory
|
||||
import org.apache.hadoop.fs.Path
|
||||
import org.json4s.{DefaultFormats, JValue}
|
||||
import org.json4s.JsonAST.JObject
|
||||
import org.json4s.jackson.JsonMethods.{compact, parse, render}
|
||||
|
||||
import org.apache.spark.SparkContext
|
||||
import org.apache.spark.ml.param.{Param, Params}
|
||||
import org.apache.spark.ml.param.Params
|
||||
import org.apache.spark.ml.util.MLReader
|
||||
|
||||
// This originates from apache-spark DefaultPramsReader copy paste
|
||||
private[spark] object DefaultXGBoostParamsReader {
|
||||
|
||||
private val logger = LogFactory.getLog("XGBoostSpark")
|
||||
|
||||
private val paramNameCompatibilityMap: Map[String, String] = Map("silent" -> "verbosity")
|
||||
|
||||
private val paramValueCompatibilityMap: Map[String, Map[Any, Any]] =
|
||||
@@ -126,9 +130,16 @@ private[spark] object DefaultXGBoostParamsReader {
|
||||
metadata.params match {
|
||||
case JObject(pairs) =>
|
||||
pairs.foreach { case (paramName, jsonValue) =>
|
||||
val param = instance.getParam(handleBrokenlyChangedName(paramName))
|
||||
val value = param.jsonDecode(compact(render(jsonValue)))
|
||||
instance.set(param, handleBrokenlyChangedValue(paramName, value))
|
||||
val finalName = handleBrokenlyChangedName(paramName)
|
||||
// For the deleted parameters, we'd better to remove it instead of throwing an exception.
|
||||
// So we need to check if the parameter exists instead of blindly setting it.
|
||||
if (instance.hasParam(finalName)) {
|
||||
val param = instance.getParam(finalName)
|
||||
val value = param.jsonDecode(compact(render(jsonValue)))
|
||||
instance.set(param, handleBrokenlyChangedValue(paramName, value))
|
||||
} else {
|
||||
logger.warn(s"$finalName is no longer used in ${spark.VERSION}")
|
||||
}
|
||||
}
|
||||
case _ =>
|
||||
throw new IllegalArgumentException(
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014,2021 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -247,6 +247,27 @@ trait HasNumClass extends Params {
|
||||
final def getNumClass: Int = $(numClass)
|
||||
}
|
||||
|
||||
/**
|
||||
* Trait for shared param featuresCols.
|
||||
*/
|
||||
trait HasFeaturesCols extends Params {
|
||||
/**
|
||||
* Param for the names of feature columns.
|
||||
* @group param
|
||||
*/
|
||||
final val featuresCols: StringArrayParam = new StringArrayParam(this, "featuresCols",
|
||||
"an array of feature column names.")
|
||||
|
||||
/** @group getParam */
|
||||
final def getFeaturesCols: Array[String] = $(featuresCols)
|
||||
|
||||
/** Check if featuresCols is valid */
|
||||
def isFeaturesColsValid: Boolean = {
|
||||
isDefined(featuresCols) && $(featuresCols) != Array.empty
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private[spark] trait ParamMapFuncs extends Params {
|
||||
|
||||
def XGBoost2MLlibParams(xgboostParams: Map[String, Any]): Unit = {
|
||||
|
||||
@@ -1,34 +0,0 @@
|
||||
/*
|
||||
Copyright (c) 2021-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
*/
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark.params
|
||||
|
||||
import org.apache.spark.ml.param.{Params, StringArrayParam}
|
||||
|
||||
trait GpuParams extends Params {
|
||||
/**
|
||||
* Param for the names of feature columns for GPU pipeline.
|
||||
* @group param
|
||||
*/
|
||||
final val featuresCols: StringArrayParam = new StringArrayParam(this, "featuresCols",
|
||||
"an array of feature column names for GPU pipeline.")
|
||||
|
||||
setDefault(featuresCols, Array.empty[String])
|
||||
|
||||
/** @group getParam */
|
||||
final def getFeaturesCols: Array[String] = $(featuresCols)
|
||||
|
||||
}
|
||||
@@ -105,14 +105,8 @@ private[spark] trait LearningTaskParams extends Params {
|
||||
|
||||
final def getMaximizeEvaluationMetrics: Boolean = $(maximizeEvaluationMetrics)
|
||||
|
||||
/**
|
||||
* whether killing SparkContext when training task fails
|
||||
*/
|
||||
final val killSparkContextOnWorkerFailure = new BooleanParam(this,
|
||||
"killSparkContextOnWorkerFailure", "whether killing SparkContext when training task fails")
|
||||
|
||||
setDefault(objective -> "reg:squarederror", baseScore -> 0.5, trainTestRatio -> 1.0,
|
||||
numEarlyStoppingRounds -> 0, cacheTrainingSet -> false, killSparkContextOnWorkerFailure -> true)
|
||||
numEarlyStoppingRounds -> 0, cacheTrainingSet -> false)
|
||||
}
|
||||
|
||||
private[spark] object LearningTaskParams {
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014,2021 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,16 +16,101 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark.params
|
||||
|
||||
import org.apache.spark.ml.param.shared.{HasFeaturesCol, HasLabelCol, HasWeightCol}
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
import org.apache.spark.ml.linalg.xgboost.XGBoostSchemaUtils
|
||||
import org.apache.spark.ml.param.{Param, ParamValidators}
|
||||
import org.apache.spark.ml.param.shared.{HasFeaturesCol, HasHandleInvalid, HasLabelCol, HasWeightCol}
|
||||
import org.apache.spark.sql.Dataset
|
||||
import org.apache.spark.sql.types.StructType
|
||||
|
||||
private[scala] sealed trait XGBoostEstimatorCommon extends GeneralParams with LearningTaskParams
|
||||
with BoosterParams with RabitParams with ParamMapFuncs with NonParamVariables with HasWeightCol
|
||||
with HasBaseMarginCol with HasLeafPredictionCol with HasContribPredictionCol with HasFeaturesCol
|
||||
with HasLabelCol with GpuParams {
|
||||
with HasLabelCol with HasFeaturesCols with HasHandleInvalid {
|
||||
|
||||
def needDeterministicRepartitioning: Boolean = {
|
||||
getCheckpointPath != null && getCheckpointPath.nonEmpty && getCheckpointInterval > 0
|
||||
}
|
||||
|
||||
/**
|
||||
* Param for how to handle invalid data (NULL values). Options are 'skip' (filter out rows with
|
||||
* invalid data), 'error' (throw an error), or 'keep' (return relevant number of NaN in the
|
||||
* output). Column lengths are taken from the size of ML Attribute Group, which can be set using
|
||||
* `VectorSizeHint` in a pipeline before `VectorAssembler`. Column lengths can also be inferred
|
||||
* from first rows of the data since it is safe to do so but only in case of 'error' or 'skip'.
|
||||
* Default: "error"
|
||||
* @group param
|
||||
*/
|
||||
override val handleInvalid: Param[String] = new Param[String](this, "handleInvalid",
|
||||
"""Param for how to handle invalid data (NULL and NaN values). Options are 'skip' (filter out
|
||||
|rows with invalid data), 'error' (throw an error), or 'keep' (return relevant number of NaN
|
||||
|in the output). Column lengths are taken from the size of ML Attribute Group, which can be
|
||||
|set using `VectorSizeHint` in a pipeline before `VectorAssembler`. Column lengths can also
|
||||
|be inferred from first rows of the data since it is safe to do so but only in case of 'error'
|
||||
|or 'skip'.""".stripMargin.replaceAll("\n", " "),
|
||||
ParamValidators.inArray(Array("skip", "error", "keep")))
|
||||
|
||||
setDefault(handleInvalid, "error")
|
||||
|
||||
/**
|
||||
* Specify an array of feature column names which must be numeric types.
|
||||
*/
|
||||
def setFeaturesCol(value: Array[String]): this.type = set(featuresCols, value)
|
||||
|
||||
/** Set the handleInvalid for VectorAssembler */
|
||||
def setHandleInvalid(value: String): this.type = set(handleInvalid, value)
|
||||
|
||||
/**
|
||||
* Check if schema has a field named with the value of "featuresCol" param and it's data type
|
||||
* must be VectorUDT
|
||||
*/
|
||||
def isFeaturesColSet(schema: StructType): Boolean = {
|
||||
schema.fieldNames.contains(getFeaturesCol) &&
|
||||
XGBoostSchemaUtils.isVectorUDFType(schema(getFeaturesCol).dataType)
|
||||
}
|
||||
|
||||
/** check the features columns type */
|
||||
def transformSchemaWithFeaturesCols(fit: Boolean, schema: StructType): StructType = {
|
||||
if (isFeaturesColsValid) {
|
||||
if (fit) {
|
||||
XGBoostSchemaUtils.checkNumericType(schema, $(labelCol))
|
||||
}
|
||||
$(featuresCols).foreach(feature =>
|
||||
XGBoostSchemaUtils.checkFeatureColumnType(schema(feature).dataType))
|
||||
schema
|
||||
} else {
|
||||
throw new IllegalArgumentException("featuresCol or featuresCols must be specified")
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Vectorize the features columns if necessary.
|
||||
*
|
||||
* @param input the input dataset
|
||||
* @return (output dataset and the feature column name)
|
||||
*/
|
||||
def vectorize(input: Dataset[_]): (Dataset[_], String) = {
|
||||
val schema = input.schema
|
||||
if (isFeaturesColSet(schema)) {
|
||||
// Dataset already has vectorized.
|
||||
(input, getFeaturesCol)
|
||||
} else if (isFeaturesColsValid) {
|
||||
val featuresName = if (!schema.fieldNames.contains(getFeaturesCol)) {
|
||||
getFeaturesCol
|
||||
} else {
|
||||
"features_" + uid
|
||||
}
|
||||
val vectorAssembler = new VectorAssembler()
|
||||
.setHandleInvalid($(handleInvalid))
|
||||
.setInputCols(getFeaturesCols)
|
||||
.setOutputCol(featuresName)
|
||||
(vectorAssembler.transform(input).select(featuresName, getLabelCol), featuresName)
|
||||
} else {
|
||||
// never reach here, since transformSchema will take care of the case
|
||||
// that featuresCols is invalid
|
||||
(input, getFeaturesCol)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private[scala] trait XGBoostClassifierParams extends XGBoostEstimatorCommon with HasNumClass
|
||||
|
||||
@@ -1,175 +0,0 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
*/
|
||||
|
||||
package org.apache.spark
|
||||
|
||||
import org.apache.commons.logging.LogFactory
|
||||
import org.apache.spark.scheduler._
|
||||
|
||||
import scala.collection.mutable.{HashMap, HashSet}
|
||||
|
||||
/**
|
||||
* A tracker that ensures enough number of executor cores are alive.
|
||||
* Throws an exception when the number of alive cores is less than nWorkers.
|
||||
*
|
||||
* @param sc The SparkContext object
|
||||
* @param timeout The maximum time to wait for enough number of workers.
|
||||
* @param numWorkers nWorkers used in an XGBoost Job
|
||||
* @param killSparkContextOnWorkerFailure kill SparkContext or not when task fails
|
||||
*/
|
||||
class SparkParallelismTracker(
|
||||
val sc: SparkContext,
|
||||
timeout: Long,
|
||||
numWorkers: Int,
|
||||
killSparkContextOnWorkerFailure: Boolean = true) {
|
||||
|
||||
private[this] val requestedCores = numWorkers * sc.conf.getInt("spark.task.cpus", 1)
|
||||
private[this] val logger = LogFactory.getLog("XGBoostSpark")
|
||||
|
||||
private[this] def numAliveCores: Int = {
|
||||
sc.statusStore.executorList(true).map(_.totalCores).sum
|
||||
}
|
||||
|
||||
private[this] def waitForCondition(
|
||||
condition: => Boolean,
|
||||
timeout: Long,
|
||||
checkInterval: Long = 100L) = {
|
||||
val waitImpl = new ((Long, Boolean) => Boolean) {
|
||||
override def apply(waitedTime: Long, status: Boolean): Boolean = status match {
|
||||
case s if s => true
|
||||
case _ => waitedTime match {
|
||||
case t if t < timeout =>
|
||||
Thread.sleep(checkInterval)
|
||||
apply(t + checkInterval, status = condition)
|
||||
case _ => false
|
||||
}
|
||||
}
|
||||
}
|
||||
waitImpl(0L, condition)
|
||||
}
|
||||
|
||||
private[this] def safeExecute[T](body: => T): T = {
|
||||
val listener = new TaskFailedListener(killSparkContextOnWorkerFailure)
|
||||
sc.addSparkListener(listener)
|
||||
try {
|
||||
body
|
||||
} finally {
|
||||
sc.removeSparkListener(listener)
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Execute a blocking function call with two checks on enough nWorkers:
|
||||
* - Before the function starts, wait until there are enough executor cores.
|
||||
* - During the execution, throws an exception if there is any executor lost.
|
||||
*
|
||||
* @param body A blocking function call
|
||||
* @tparam T Return type
|
||||
* @return The return of body
|
||||
*/
|
||||
def execute[T](body: => T): T = {
|
||||
if (timeout <= 0) {
|
||||
logger.info("starting training without setting timeout for waiting for resources")
|
||||
safeExecute(body)
|
||||
} else {
|
||||
logger.info(s"starting training with timeout set as $timeout ms for waiting for resources")
|
||||
if (!waitForCondition(numAliveCores >= requestedCores, timeout)) {
|
||||
throw new IllegalStateException(s"Unable to get $requestedCores cores for XGBoost training")
|
||||
}
|
||||
safeExecute(body)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
class TaskFailedListener(killSparkContext: Boolean = true) extends SparkListener {
|
||||
|
||||
private[this] val logger = LogFactory.getLog("XGBoostTaskFailedListener")
|
||||
|
||||
// {jobId, [stageId0, stageId1, ...] }
|
||||
// keep track of the mapping of job id and stage ids
|
||||
// when a task fails, find the job id and stage id the task belongs to, finally
|
||||
// cancel the jobs
|
||||
private val jobIdToStageIds: HashMap[Int, HashSet[Int]] = HashMap.empty
|
||||
|
||||
override def onJobStart(jobStart: SparkListenerJobStart): Unit = {
|
||||
if (!killSparkContext) {
|
||||
jobStart.stageIds.foreach(stageId => {
|
||||
jobIdToStageIds.getOrElseUpdate(jobStart.jobId, new HashSet[Int]()) += stageId
|
||||
})
|
||||
}
|
||||
}
|
||||
|
||||
override def onJobEnd(jobEnd: SparkListenerJobEnd): Unit = {
|
||||
if (!killSparkContext) {
|
||||
jobIdToStageIds.remove(jobEnd.jobId)
|
||||
}
|
||||
}
|
||||
|
||||
override def onTaskEnd(taskEnd: SparkListenerTaskEnd): Unit = {
|
||||
taskEnd.reason match {
|
||||
case taskEndReason: TaskFailedReason =>
|
||||
logger.error(s"Training Task Failed during XGBoost Training: " +
|
||||
s"$taskEndReason")
|
||||
if (killSparkContext) {
|
||||
logger.error("killing SparkContext")
|
||||
TaskFailedListener.startedSparkContextKiller()
|
||||
} else {
|
||||
val stageId = taskEnd.stageId
|
||||
// find job ids according to stage id and then cancel the job
|
||||
|
||||
jobIdToStageIds.foreach {
|
||||
case (jobId, stageIds) =>
|
||||
if (stageIds.contains(stageId)) {
|
||||
logger.error("Cancelling jobId:" + jobId)
|
||||
jobIdToStageIds.remove(jobId)
|
||||
SparkContext.getOrCreate().cancelJob(jobId)
|
||||
}
|
||||
}
|
||||
}
|
||||
case _ =>
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
object TaskFailedListener {
|
||||
|
||||
var killerStarted: Boolean = false
|
||||
|
||||
var sparkContextKiller: Thread = _
|
||||
|
||||
val sparkContextShutdownLock = new AnyRef
|
||||
|
||||
private def startedSparkContextKiller(): Unit = this.synchronized {
|
||||
if (!killerStarted) {
|
||||
killerStarted = true
|
||||
// Spark does not allow ListenerThread to shutdown SparkContext so that we have to do it
|
||||
// in a separate thread
|
||||
sparkContextKiller = new Thread() {
|
||||
override def run(): Unit = {
|
||||
LiveListenerBus.withinListenerThread.withValue(false) {
|
||||
sparkContextShutdownLock.synchronized {
|
||||
SparkContext.getActive.foreach(_.stop())
|
||||
killerStarted = false
|
||||
sparkContextShutdownLock.notify()
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
sparkContextKiller.setDaemon(true)
|
||||
sparkContextKiller.start()
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,51 @@
|
||||
/*
|
||||
Copyright (c) 2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
*/
|
||||
|
||||
package org.apache.spark.ml.linalg.xgboost
|
||||
|
||||
import org.apache.spark.sql.types.{BooleanType, DataType, NumericType, StructType}
|
||||
import org.apache.spark.ml.linalg.VectorUDT
|
||||
import org.apache.spark.ml.util.SchemaUtils
|
||||
|
||||
object XGBoostSchemaUtils {
|
||||
|
||||
/** check if the dataType is VectorUDT */
|
||||
def isVectorUDFType(dataType: DataType): Boolean = {
|
||||
dataType match {
|
||||
case _: VectorUDT => true
|
||||
case _ => false
|
||||
}
|
||||
}
|
||||
|
||||
/** The feature columns will be vectorized by VectorAssembler first, which only
|
||||
* supports Numeric, Boolean and VectorUDT types */
|
||||
def checkFeatureColumnType(dataType: DataType): Unit = {
|
||||
dataType match {
|
||||
case _: NumericType | BooleanType =>
|
||||
case _: VectorUDT =>
|
||||
case d => throw new UnsupportedOperationException(s"featuresCols only supports Numeric, " +
|
||||
s"boolean and VectorUDT types, found: ${d}")
|
||||
}
|
||||
}
|
||||
|
||||
def checkNumericType(
|
||||
schema: StructType,
|
||||
colName: String,
|
||||
msg: String = ""): Unit = {
|
||||
SchemaUtils.checkNumericType(schema, colName, msg)
|
||||
}
|
||||
|
||||
}
|
||||
@@ -1 +1 @@
|
||||
log4j.logger.org.apache.spark=ERROR
|
||||
log4j.logger.org.apache.spark=ERROR
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -19,7 +19,7 @@ package ml.dmlc.xgboost4j.scala.spark
|
||||
import java.io.File
|
||||
|
||||
import ml.dmlc.xgboost4j.scala.{Booster, DMatrix, ExternalCheckpointManager, XGBoost => SXGBoost}
|
||||
import org.scalatest.{FunSuite, Ignore}
|
||||
import org.scalatest.FunSuite
|
||||
import org.apache.hadoop.fs.{FileSystem, Path}
|
||||
|
||||
class ExternalCheckpointManagerSuite extends FunSuite with TmpFolderPerSuite with PerTest {
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,10 +16,8 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.XGBoostError
|
||||
import org.apache.spark.Partitioner
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
import org.apache.spark.sql.SparkSession
|
||||
import org.scalatest.FunSuite
|
||||
import org.apache.spark.sql.functions._
|
||||
|
||||
@@ -53,7 +51,7 @@ class FeatureSizeValidatingSuite extends FunSuite with PerTest {
|
||||
"objective" -> "binary:logistic",
|
||||
"num_round" -> 5, "num_workers" -> 2, "use_external_memory" -> true, "missing" -> 0)
|
||||
import DataUtils._
|
||||
val sparkSession = SparkSession.builder().getOrCreate()
|
||||
val sparkSession = ss
|
||||
import sparkSession.implicits._
|
||||
val repartitioned = sc.parallelize(Synthetic.trainWithDiffFeatureSize, 2)
|
||||
.map(lp => (lp.label, lp)).partitionBy(
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,14 +16,14 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.XGBoostError
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
import org.apache.spark.ml.linalg.Vectors
|
||||
import org.apache.spark.sql.DataFrame
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
import scala.util.Random
|
||||
|
||||
import org.apache.spark.SparkException
|
||||
|
||||
class MissingValueHandlingSuite extends FunSuite with PerTest {
|
||||
test("dense vectors containing missing value") {
|
||||
def buildDenseDataFrame(): DataFrame = {
|
||||
@@ -113,7 +113,7 @@ class MissingValueHandlingSuite extends FunSuite with PerTest {
|
||||
val inputDF = vectorAssembler.transform(testDF).select("features", "label")
|
||||
val paramMap = List("eta" -> "1", "max_depth" -> "2",
|
||||
"objective" -> "binary:logistic", "missing" -> -1.0f, "num_workers" -> 1).toMap
|
||||
intercept[XGBoostError] {
|
||||
intercept[SparkException] {
|
||||
new XGBoostClassifier(paramMap).fit(inputDF)
|
||||
}
|
||||
}
|
||||
@@ -140,7 +140,7 @@ class MissingValueHandlingSuite extends FunSuite with PerTest {
|
||||
inputDF.show()
|
||||
val paramMap = List("eta" -> "1", "max_depth" -> "2",
|
||||
"objective" -> "binary:logistic", "missing" -> -1.0f, "num_workers" -> 1).toMap
|
||||
intercept[XGBoostError] {
|
||||
intercept[SparkException] {
|
||||
new XGBoostClassifier(paramMap).fit(inputDF)
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,9 +16,9 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.XGBoostError
|
||||
import org.scalatest.{BeforeAndAfterAll, FunSuite, Ignore}
|
||||
import org.scalatest.{BeforeAndAfterAll, FunSuite}
|
||||
|
||||
import org.apache.spark.SparkException
|
||||
import org.apache.spark.ml.param.ParamMap
|
||||
|
||||
class ParameterSuite extends FunSuite with PerTest with BeforeAndAfterAll {
|
||||
@@ -40,28 +40,16 @@ class ParameterSuite extends FunSuite with PerTest with BeforeAndAfterAll {
|
||||
assert(xgbCopy2.MLlib2XGBoostParams("eval_metric").toString === "logloss")
|
||||
}
|
||||
|
||||
private def waitForSparkContextShutdown(): Unit = {
|
||||
var totalWaitedTime = 0L
|
||||
while (!ss.sparkContext.isStopped && totalWaitedTime <= 120000) {
|
||||
Thread.sleep(10000)
|
||||
totalWaitedTime += 10000
|
||||
}
|
||||
assert(ss.sparkContext.isStopped === true)
|
||||
}
|
||||
|
||||
test("fail training elegantly with unsupported objective function") {
|
||||
val paramMap = Map("eta" -> "0.1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "wrong_objective_function", "num_class" -> "6", "num_round" -> 5,
|
||||
"num_workers" -> numWorkers)
|
||||
val trainingDF = buildDataFrame(MultiClassification.train)
|
||||
val xgb = new XGBoostClassifier(paramMap)
|
||||
try {
|
||||
val model = xgb.fit(trainingDF)
|
||||
} catch {
|
||||
case e: Throwable => // swallow anything
|
||||
} finally {
|
||||
waitForSparkContextShutdown()
|
||||
intercept[SparkException] {
|
||||
xgb.fit(trainingDF)
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
test("fail training elegantly with unsupported eval metrics") {
|
||||
@@ -70,12 +58,8 @@ class ParameterSuite extends FunSuite with PerTest with BeforeAndAfterAll {
|
||||
"num_workers" -> numWorkers, "eval_metric" -> "wrong_eval_metrics")
|
||||
val trainingDF = buildDataFrame(MultiClassification.train)
|
||||
val xgb = new XGBoostClassifier(paramMap)
|
||||
try {
|
||||
val model = xgb.fit(trainingDF)
|
||||
} catch {
|
||||
case e: Throwable => // swallow anything
|
||||
} finally {
|
||||
waitForSparkContextShutdown()
|
||||
intercept[SparkException] {
|
||||
xgb.fit(trainingDF)
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -19,7 +19,7 @@ package ml.dmlc.xgboost4j.scala.spark
|
||||
import java.io.File
|
||||
|
||||
import ml.dmlc.xgboost4j.{LabeledPoint => XGBLabeledPoint}
|
||||
import org.apache.spark.{SparkConf, SparkContext, TaskFailedListener}
|
||||
import org.apache.spark.SparkContext
|
||||
import org.apache.spark.sql._
|
||||
import org.scalatest.{BeforeAndAfterEach, FunSuite}
|
||||
|
||||
@@ -40,32 +40,16 @@ trait PerTest extends BeforeAndAfterEach { self: FunSuite =>
|
||||
.appName("XGBoostSuite")
|
||||
.config("spark.ui.enabled", false)
|
||||
.config("spark.driver.memory", "512m")
|
||||
.config("spark.barrier.sync.timeout", 10)
|
||||
.config("spark.task.cpus", 1)
|
||||
|
||||
override def beforeEach(): Unit = getOrCreateSession
|
||||
|
||||
override def afterEach() {
|
||||
TaskFailedListener.sparkContextShutdownLock.synchronized {
|
||||
if (currentSession != null) {
|
||||
// this synchronization is mostly for the tests involving SparkContext shutdown
|
||||
// for unit test involving the sparkContext shutdown there are two different events sequence
|
||||
// 1. SparkContext killer is executed before afterEach, in this case, before SparkContext
|
||||
// is fully stopped, afterEach() will block at the following code block
|
||||
// 2. SparkContext killer is executed afterEach, in this case, currentSession.stop() in will
|
||||
// block to wait for all msgs in ListenerBus get processed. Because currentSession.stop()
|
||||
// has been called, SparkContext killer will not take effect
|
||||
while (TaskFailedListener.killerStarted) {
|
||||
TaskFailedListener.sparkContextShutdownLock.wait()
|
||||
}
|
||||
currentSession.stop()
|
||||
cleanExternalCache(currentSession.sparkContext.appName)
|
||||
currentSession = null
|
||||
}
|
||||
if (TaskFailedListener.sparkContextKiller != null) {
|
||||
TaskFailedListener.sparkContextKiller.interrupt()
|
||||
TaskFailedListener.sparkContextKiller = null
|
||||
}
|
||||
TaskFailedListener.killerStarted = false
|
||||
if (currentSession != null) {
|
||||
currentSession.stop()
|
||||
cleanExternalCache(currentSession.sparkContext.appName)
|
||||
currentSession = null
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014,2021 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -24,11 +24,61 @@ import ml.dmlc.xgboost4j.java.{Rabit, RabitTracker => PyRabitTracker}
|
||||
import ml.dmlc.xgboost4j.scala.rabit.{RabitTracker => ScalaRabitTracker}
|
||||
import ml.dmlc.xgboost4j.java.IRabitTracker.TrackerStatus
|
||||
import ml.dmlc.xgboost4j.scala.DMatrix
|
||||
|
||||
import org.scalatest.{FunSuite, Ignore}
|
||||
import org.scalatest.{FunSuite}
|
||||
|
||||
class RabitRobustnessSuite extends FunSuite with PerTest {
|
||||
|
||||
private def getXGBoostExecutionParams(paramMap: Map[String, Any]): XGBoostExecutionParams = {
|
||||
val classifier = new XGBoostClassifier(paramMap)
|
||||
val xgbParamsFactory = new XGBoostExecutionParamsFactory(classifier.MLlib2XGBoostParams, sc)
|
||||
xgbParamsFactory.buildXGBRuntimeParams
|
||||
}
|
||||
|
||||
|
||||
test("Customize host ip and python exec for Rabit tracker") {
|
||||
val hostIp = "192.168.22.111"
|
||||
val pythonExec = "/usr/bin/python3"
|
||||
|
||||
val paramMap = Map(
|
||||
"num_workers" -> numWorkers,
|
||||
"tracker_conf" -> TrackerConf(0L, "python", hostIp))
|
||||
val xgbExecParams = getXGBoostExecutionParams(paramMap)
|
||||
val tracker = XGBoost.getTracker(xgbExecParams.numWorkers, xgbExecParams.trackerConf)
|
||||
tracker match {
|
||||
case pyTracker: PyRabitTracker =>
|
||||
val cmd = pyTracker.getRabitTrackerCommand
|
||||
assert(cmd.contains(hostIp))
|
||||
assert(cmd.startsWith("python"))
|
||||
case _ => assert(false, "expected python tracker implementation")
|
||||
}
|
||||
|
||||
val paramMap1 = Map(
|
||||
"num_workers" -> numWorkers,
|
||||
"tracker_conf" -> TrackerConf(0L, "python", "", pythonExec))
|
||||
val xgbExecParams1 = getXGBoostExecutionParams(paramMap1)
|
||||
val tracker1 = XGBoost.getTracker(xgbExecParams1.numWorkers, xgbExecParams1.trackerConf)
|
||||
tracker1 match {
|
||||
case pyTracker: PyRabitTracker =>
|
||||
val cmd = pyTracker.getRabitTrackerCommand
|
||||
assert(cmd.startsWith(pythonExec))
|
||||
assert(!cmd.contains(hostIp))
|
||||
case _ => assert(false, "expected python tracker implementation")
|
||||
}
|
||||
|
||||
val paramMap2 = Map(
|
||||
"num_workers" -> numWorkers,
|
||||
"tracker_conf" -> TrackerConf(0L, "python", hostIp, pythonExec))
|
||||
val xgbExecParams2 = getXGBoostExecutionParams(paramMap2)
|
||||
val tracker2 = XGBoost.getTracker(xgbExecParams2.numWorkers, xgbExecParams2.trackerConf)
|
||||
tracker2 match {
|
||||
case pyTracker: PyRabitTracker =>
|
||||
val cmd = pyTracker.getRabitTrackerCommand
|
||||
assert(cmd.startsWith(pythonExec))
|
||||
assert(cmd.contains(s" --host-ip=${hostIp}"))
|
||||
case _ => assert(false, "expected python tracker implementation")
|
||||
}
|
||||
}
|
||||
|
||||
test("training with Scala-implemented Rabit tracker") {
|
||||
val eval = new EvalError()
|
||||
val training = buildDataFrame(Classification.train)
|
||||
|
||||
@@ -23,6 +23,7 @@ import org.apache.spark.sql._
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
import org.apache.spark.Partitioner
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
|
||||
class XGBoostClassifierSuite extends FunSuite with PerTest {
|
||||
|
||||
@@ -316,4 +317,78 @@ class XGBoostClassifierSuite extends FunSuite with PerTest {
|
||||
xgb.fit(repartitioned)
|
||||
}
|
||||
|
||||
test("featuresCols with features column can work") {
|
||||
val spark = ss
|
||||
import spark.implicits._
|
||||
val xgbInput = Seq(
|
||||
(Vectors.dense(1.0, 7.0), true, 10.1, 100.2, 0),
|
||||
(Vectors.dense(2.0, 20.0), false, 2.1, 2.2, 1))
|
||||
.toDF("f1", "f2", "f3", "features", "label")
|
||||
|
||||
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> 1)
|
||||
|
||||
val featuresName = Array("f1", "f2", "f3", "features")
|
||||
val xgbClassifier = new XGBoostClassifier(paramMap)
|
||||
.setFeaturesCol(featuresName)
|
||||
.setLabelCol("label")
|
||||
|
||||
val model = xgbClassifier.fit(xgbInput)
|
||||
assert(model.getFeaturesCols.sameElements(featuresName))
|
||||
|
||||
val df = model.transform(xgbInput)
|
||||
assert(df.schema.fieldNames.contains("features_" + model.uid))
|
||||
df.show()
|
||||
|
||||
val newFeatureName = "features_new"
|
||||
// transform also can work for vectorized dataset
|
||||
val vectorizedInput = new VectorAssembler()
|
||||
.setInputCols(featuresName)
|
||||
.setOutputCol(newFeatureName)
|
||||
.transform(xgbInput)
|
||||
.select(newFeatureName, "label")
|
||||
|
||||
val df1 = model
|
||||
.setFeaturesCol(newFeatureName)
|
||||
.transform(vectorizedInput)
|
||||
assert(df1.schema.fieldNames.contains(newFeatureName))
|
||||
df1.show()
|
||||
}
|
||||
|
||||
test("featuresCols without features column can work") {
|
||||
val spark = ss
|
||||
import spark.implicits._
|
||||
val xgbInput = Seq(
|
||||
(Vectors.dense(1.0, 7.0), true, 10.1, 100.2, 0),
|
||||
(Vectors.dense(2.0, 20.0), false, 2.1, 2.2, 1))
|
||||
.toDF("f1", "f2", "f3", "f4", "label")
|
||||
|
||||
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> 1)
|
||||
|
||||
val featuresName = Array("f1", "f2", "f3", "f4")
|
||||
val xgbClassifier = new XGBoostClassifier(paramMap)
|
||||
.setFeaturesCol(featuresName)
|
||||
.setLabelCol("label")
|
||||
.setEvalSets(Map("eval" -> xgbInput))
|
||||
|
||||
val model = xgbClassifier.fit(xgbInput)
|
||||
assert(model.getFeaturesCols.sameElements(featuresName))
|
||||
|
||||
// transform should work for the dataset which includes the feature column names.
|
||||
val df = model.transform(xgbInput)
|
||||
assert(df.schema.fieldNames.contains("features"))
|
||||
df.show()
|
||||
|
||||
// transform also can work for vectorized dataset
|
||||
val vectorizedInput = new VectorAssembler()
|
||||
.setInputCols(featuresName)
|
||||
.setOutputCol("features")
|
||||
.transform(xgbInput)
|
||||
.select("features", "label")
|
||||
|
||||
val df1 = model.transform(vectorizedInput)
|
||||
df1.show()
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,10 +16,8 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.Rabit
|
||||
import ml.dmlc.xgboost4j.scala.{Booster, DMatrix}
|
||||
|
||||
import scala.collection.JavaConverters._
|
||||
import org.apache.spark.sql._
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,13 +16,12 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.XGBoostError
|
||||
import scala.util.Random
|
||||
|
||||
import ml.dmlc.xgboost4j.{LabeledPoint => XGBLabeledPoint}
|
||||
import ml.dmlc.xgboost4j.scala.DMatrix
|
||||
|
||||
import org.apache.spark.TaskContext
|
||||
import org.apache.spark.{SparkException, TaskContext}
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
@@ -375,13 +374,14 @@ class XGBoostGeneralSuite extends FunSuite with TmpFolderPerSuite with PerTest {
|
||||
|
||||
test("throw exception for empty partition in trainingset") {
|
||||
val paramMap = Map("eta" -> "0.1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "multi:softmax", "num_class" -> "2", "num_round" -> 5,
|
||||
"num_workers" -> numWorkers, "tree_method" -> "auto")
|
||||
"objective" -> "binary:logistic", "num_class" -> "2", "num_round" -> 5,
|
||||
"num_workers" -> numWorkers, "tree_method" -> "auto", "allow_non_zero_for_missing" -> true)
|
||||
// The Dmatrix will be empty
|
||||
val trainingDF = buildDataFrame(Seq(XGBLabeledPoint(1.0f, 1, Array(), Array())))
|
||||
val trainingDF = buildDataFrame(Seq(XGBLabeledPoint(1.0f, 4,
|
||||
Array(0, 1, 2, 3), Array(0, 1, 2, 3))))
|
||||
val xgb = new XGBoostClassifier(paramMap)
|
||||
intercept[XGBoostError] {
|
||||
val model = xgb.fit(trainingDF)
|
||||
intercept[SparkException] {
|
||||
xgb.fit(trainingDF)
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -16,14 +16,15 @@
|
||||
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.java.{Rabit, XGBoostError}
|
||||
import ml.dmlc.xgboost4j.scala.{Booster, DMatrix}
|
||||
import org.apache.spark.TaskFailedListener
|
||||
import org.apache.spark.SparkException
|
||||
import ml.dmlc.xgboost4j.java.Rabit
|
||||
import ml.dmlc.xgboost4j.scala.Booster
|
||||
import scala.collection.JavaConverters._
|
||||
|
||||
import org.apache.spark.sql._
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
import org.apache.spark.SparkException
|
||||
|
||||
class XGBoostRabitRegressionSuite extends FunSuite with PerTest {
|
||||
val predictionErrorMin = 0.00001f
|
||||
val maxFailure = 2;
|
||||
@@ -33,15 +34,6 @@ class XGBoostRabitRegressionSuite extends FunSuite with PerTest {
|
||||
.config("spark.kryo.classesToRegister", classOf[Booster].getName)
|
||||
.master(s"local[${numWorkers},${maxFailure}]")
|
||||
|
||||
private def waitAndCheckSparkShutdown(waitMiliSec: Int): Boolean = {
|
||||
var totalWaitedTime = 0L
|
||||
while (!ss.sparkContext.isStopped && totalWaitedTime <= waitMiliSec) {
|
||||
Thread.sleep(10)
|
||||
totalWaitedTime += 10
|
||||
}
|
||||
return ss.sparkContext.isStopped
|
||||
}
|
||||
|
||||
test("test classification prediction parity w/o ring reduce") {
|
||||
val training = buildDataFrame(Classification.train)
|
||||
val testDF = buildDataFrame(Classification.test)
|
||||
@@ -91,14 +83,11 @@ class XGBoostRabitRegressionSuite extends FunSuite with PerTest {
|
||||
}
|
||||
|
||||
test("test rabit timeout fail handle") {
|
||||
// disable spark kill listener to verify if rabit_timeout take effect and kill tasks
|
||||
TaskFailedListener.killerStarted = true
|
||||
|
||||
val training = buildDataFrame(Classification.train)
|
||||
// mock rank 0 failure during 8th allreduce synchronization
|
||||
Rabit.mockList = Array("0,8,0,0").toList.asJava
|
||||
|
||||
try {
|
||||
intercept[SparkException] {
|
||||
new XGBoostClassifier(Map(
|
||||
"eta" -> "0.1",
|
||||
"max_depth" -> "10",
|
||||
@@ -108,37 +97,7 @@ class XGBoostRabitRegressionSuite extends FunSuite with PerTest {
|
||||
"num_workers" -> numWorkers,
|
||||
"rabit_timeout" -> 0))
|
||||
.fit(training)
|
||||
} catch {
|
||||
case e: Throwable => // swallow anything
|
||||
} finally {
|
||||
// assume all tasks throw exception almost same time
|
||||
// 100ms should be enough to exhaust all retries
|
||||
assert(waitAndCheckSparkShutdown(100) == true)
|
||||
TaskFailedListener.killerStarted = false
|
||||
}
|
||||
}
|
||||
|
||||
test("test SparkContext should not be killed ") {
|
||||
val training = buildDataFrame(Classification.train)
|
||||
// mock rank 0 failure during 8th allreduce synchronization
|
||||
Rabit.mockList = Array("0,8,0,0").toList.asJava
|
||||
|
||||
try {
|
||||
new XGBoostClassifier(Map(
|
||||
"eta" -> "0.1",
|
||||
"max_depth" -> "10",
|
||||
"verbosity" -> "1",
|
||||
"objective" -> "binary:logistic",
|
||||
"num_round" -> 5,
|
||||
"num_workers" -> numWorkers,
|
||||
"kill_spark_context_on_worker_failure" -> false,
|
||||
"rabit_timeout" -> 0))
|
||||
.fit(training)
|
||||
} catch {
|
||||
case e: Throwable => // swallow anything
|
||||
} finally {
|
||||
// wait 3s to check if SparkContext is killed
|
||||
assert(waitAndCheckSparkShutdown(3000) == false)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
Copyright (c) 2014-2022 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
@@ -17,12 +17,14 @@
|
||||
package ml.dmlc.xgboost4j.scala.spark
|
||||
|
||||
import ml.dmlc.xgboost4j.scala.{DMatrix, XGBoost => ScalaXGBoost}
|
||||
import org.apache.spark.ml.linalg.Vector
|
||||
|
||||
import org.apache.spark.ml.linalg.{Vector, Vectors}
|
||||
import org.apache.spark.sql.functions._
|
||||
import org.apache.spark.sql.{DataFrame, Row}
|
||||
import org.apache.spark.sql.types._
|
||||
import org.scalatest.FunSuite
|
||||
|
||||
import org.apache.spark.ml.feature.VectorAssembler
|
||||
|
||||
class XGBoostRegressorSuite extends FunSuite with PerTest {
|
||||
protected val treeMethod: String = "auto"
|
||||
|
||||
@@ -216,4 +218,78 @@ class XGBoostRegressorSuite extends FunSuite with PerTest {
|
||||
assert(resultDF.columns.contains("predictLeaf"))
|
||||
assert(resultDF.columns.contains("predictContrib"))
|
||||
}
|
||||
|
||||
test("featuresCols with features column can work") {
|
||||
val spark = ss
|
||||
import spark.implicits._
|
||||
val xgbInput = Seq(
|
||||
(Vectors.dense(1.0, 7.0), true, 10.1, 100.2, 0),
|
||||
(Vectors.dense(2.0, 20.0), false, 2.1, 2.2, 1))
|
||||
.toDF("f1", "f2", "f3", "features", "label")
|
||||
|
||||
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "reg:squarederror", "num_round" -> 5, "num_workers" -> 1)
|
||||
|
||||
val featuresName = Array("f1", "f2", "f3", "features")
|
||||
val xgbClassifier = new XGBoostRegressor(paramMap)
|
||||
.setFeaturesCol(featuresName)
|
||||
.setLabelCol("label")
|
||||
|
||||
val model = xgbClassifier.fit(xgbInput)
|
||||
assert(model.getFeaturesCols.sameElements(featuresName))
|
||||
|
||||
val df = model.transform(xgbInput)
|
||||
assert(df.schema.fieldNames.contains("features_" + model.uid))
|
||||
df.show()
|
||||
|
||||
val newFeatureName = "features_new"
|
||||
// transform also can work for vectorized dataset
|
||||
val vectorizedInput = new VectorAssembler()
|
||||
.setInputCols(featuresName)
|
||||
.setOutputCol(newFeatureName)
|
||||
.transform(xgbInput)
|
||||
.select(newFeatureName, "label")
|
||||
|
||||
val df1 = model
|
||||
.setFeaturesCol(newFeatureName)
|
||||
.transform(vectorizedInput)
|
||||
assert(df1.schema.fieldNames.contains(newFeatureName))
|
||||
df1.show()
|
||||
}
|
||||
|
||||
test("featuresCols without features column can work") {
|
||||
val spark = ss
|
||||
import spark.implicits._
|
||||
val xgbInput = Seq(
|
||||
(Vectors.dense(1.0, 7.0), true, 10.1, 100.2, 0),
|
||||
(Vectors.dense(2.0, 20.0), false, 2.1, 2.2, 1))
|
||||
.toDF("f1", "f2", "f3", "f4", "label")
|
||||
|
||||
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1",
|
||||
"objective" -> "reg:squarederror", "num_round" -> 5, "num_workers" -> 1)
|
||||
|
||||
val featuresName = Array("f1", "f2", "f3", "f4")
|
||||
val xgbClassifier = new XGBoostRegressor(paramMap)
|
||||
.setFeaturesCol(featuresName)
|
||||
.setLabelCol("label")
|
||||
.setEvalSets(Map("eval" -> xgbInput))
|
||||
|
||||
val model = xgbClassifier.fit(xgbInput)
|
||||
assert(model.getFeaturesCols.sameElements(featuresName))
|
||||
|
||||
// transform should work for the dataset which includes the feature column names.
|
||||
val df = model.transform(xgbInput)
|
||||
assert(df.schema.fieldNames.contains("features"))
|
||||
df.show()
|
||||
|
||||
// transform also can work for vectorized dataset
|
||||
val vectorizedInput = new VectorAssembler()
|
||||
.setInputCols(featuresName)
|
||||
.setOutputCol("features")
|
||||
.transform(xgbInput)
|
||||
.select("features", "label")
|
||||
|
||||
val df1 = model.transform(vectorizedInput)
|
||||
df1.show()
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,151 +0,0 @@
|
||||
/*
|
||||
Copyright (c) 2014 by Contributors
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
*/
|
||||
|
||||
package org.apache.spark
|
||||
|
||||
import org.scalatest.FunSuite
|
||||
import _root_.ml.dmlc.xgboost4j.scala.spark.PerTest
|
||||
import org.apache.spark.rdd.RDD
|
||||
import org.apache.spark.sql.SparkSession
|
||||
|
||||
import scala.math.min
|
||||
|
||||
class SparkParallelismTrackerSuite extends FunSuite with PerTest {
|
||||
|
||||
val numParallelism: Int = min(Runtime.getRuntime.availableProcessors(), 4)
|
||||
|
||||
override protected def sparkSessionBuilder: SparkSession.Builder = SparkSession.builder()
|
||||
.master(s"local[${numParallelism}]")
|
||||
.appName("XGBoostSuite")
|
||||
.config("spark.ui.enabled", true)
|
||||
.config("spark.driver.memory", "512m")
|
||||
.config("spark.task.cpus", 1)
|
||||
|
||||
private def waitAndCheckSparkShutdown(waitMiliSec: Int): Boolean = {
|
||||
var totalWaitedTime = 0L
|
||||
while (!ss.sparkContext.isStopped && totalWaitedTime <= waitMiliSec) {
|
||||
Thread.sleep(100)
|
||||
totalWaitedTime += 100
|
||||
}
|
||||
ss.sparkContext.isStopped
|
||||
}
|
||||
|
||||
test("tracker should not affect execution result when timeout is not larger than 0") {
|
||||
val nWorkers = numParallelism
|
||||
val rdd: RDD[Int] = sc.parallelize(1 to nWorkers)
|
||||
val tracker = new SparkParallelismTracker(sc, 10000, nWorkers)
|
||||
val disabledTracker = new SparkParallelismTracker(sc, 0, nWorkers)
|
||||
assert(tracker.execute(rdd.sum()) == rdd.sum())
|
||||
assert(disabledTracker.execute(rdd.sum()) == rdd.sum())
|
||||
}
|
||||
|
||||
test("tracker should throw exception if parallelism is not sufficient") {
|
||||
val nWorkers = numParallelism * 3
|
||||
val rdd: RDD[Int] = sc.parallelize(1 to nWorkers)
|
||||
val tracker = new SparkParallelismTracker(sc, 1000, nWorkers)
|
||||
intercept[IllegalStateException] {
|
||||
tracker.execute {
|
||||
rdd.map { i =>
|
||||
// Test interruption
|
||||
Thread.sleep(Long.MaxValue)
|
||||
i
|
||||
}.sum()
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
test("tracker should throw exception if parallelism is not sufficient with" +
|
||||
" spark.task.cpus larger than 1") {
|
||||
sc.conf.set("spark.task.cpus", "2")
|
||||
val nWorkers = numParallelism
|
||||
val rdd: RDD[Int] = sc.parallelize(1 to nWorkers)
|
||||
val tracker = new SparkParallelismTracker(sc, 1000, nWorkers)
|
||||
intercept[IllegalStateException] {
|
||||
tracker.execute {
|
||||
rdd.map { i =>
|
||||
// Test interruption
|
||||
Thread.sleep(Long.MaxValue)
|
||||
i
|
||||
}.sum()
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
test("tracker should not kill SparkContext when killSparkContextOnWorkerFailure=false") {
|
||||
val nWorkers = numParallelism
|
||||
val tracker = new SparkParallelismTracker(sc, 0, nWorkers, false)
|
||||
val rdd: RDD[Int] = sc.parallelize(1 to nWorkers, nWorkers)
|
||||
try {
|
||||
tracker.execute {
|
||||
rdd.map { i =>
|
||||
val partitionId = TaskContext.get().partitionId()
|
||||
if (partitionId == 0) {
|
||||
throw new RuntimeException("mocking task failing")
|
||||
}
|
||||
i
|
||||
}.sum()
|
||||
}
|
||||
} catch {
|
||||
case e: Exception => // catch the exception
|
||||
} finally {
|
||||
// wait 3s to check if SparkContext is killed
|
||||
assert(waitAndCheckSparkShutdown(3000) == false)
|
||||
}
|
||||
}
|
||||
|
||||
test("tracker should cancel the correct job when killSparkContextOnWorkerFailure=false") {
|
||||
val nWorkers = 2
|
||||
val tracker = new SparkParallelismTracker(sc, 0, nWorkers, false)
|
||||
val rdd: RDD[Int] = sc.parallelize(1 to 10, nWorkers)
|
||||
val thread = new TestThread(sc)
|
||||
thread.start()
|
||||
try {
|
||||
tracker.execute {
|
||||
rdd.map { i =>
|
||||
Thread.sleep(100)
|
||||
val partitionId = TaskContext.get().partitionId()
|
||||
if (partitionId == 0) {
|
||||
throw new RuntimeException("mocking task failing")
|
||||
}
|
||||
i
|
||||
}.sum()
|
||||
}
|
||||
} catch {
|
||||
case e: Exception => // catch the exception
|
||||
} finally {
|
||||
thread.join(8000)
|
||||
// wait 3s to check if SparkContext is killed
|
||||
assert(waitAndCheckSparkShutdown(3000) == false)
|
||||
}
|
||||
}
|
||||
|
||||
private[this] class TestThread(sc: SparkContext) extends Thread {
|
||||
override def run(): Unit = {
|
||||
var sum: Double = 0.0f
|
||||
try {
|
||||
val rdd = sc.parallelize(1 to 4, 2)
|
||||
sum = rdd.mapPartitions(iter => {
|
||||
// sleep 2s to ensure task is alive when cancelling other jobs
|
||||
Thread.sleep(2000)
|
||||
iter
|
||||
}).sum()
|
||||
} finally {
|
||||
// get the correct result
|
||||
assert(sum.toInt == 10)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -6,10 +6,10 @@
|
||||
<parent>
|
||||
<groupId>ml.dmlc</groupId>
|
||||
<artifactId>xgboost-jvm_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
</parent>
|
||||
<artifactId>xgboost4j_2.12</artifactId>
|
||||
<version>1.6.0-SNAPSHOT</version>
|
||||
<version>1.6.1</version>
|
||||
<packaging>jar</packaging>
|
||||
|
||||
<dependencies>
|
||||
|
||||
@@ -100,7 +100,7 @@ class NativeLibLoader {
|
||||
});
|
||||
|
||||
return muslRelatedMemoryMappedFilename.isPresent();
|
||||
} catch (IOException ignored) {
|
||||
} catch (Exception ignored) {
|
||||
// ignored
|
||||
}
|
||||
return false;
|
||||
|
||||
@@ -30,6 +30,8 @@ public class RabitTracker implements IRabitTracker {
|
||||
private Map<String, String> envs = new HashMap<String, String>();
|
||||
// number of workers to be submitted.
|
||||
private int numWorkers;
|
||||
private String hostIp = "";
|
||||
private String pythonExec = "";
|
||||
private AtomicReference<Process> trackerProcess = new AtomicReference<Process>();
|
||||
|
||||
static {
|
||||
@@ -85,6 +87,13 @@ public class RabitTracker implements IRabitTracker {
|
||||
this.numWorkers = numWorkers;
|
||||
}
|
||||
|
||||
public RabitTracker(int numWorkers, String hostIp, String pythonExec)
|
||||
throws XGBoostError {
|
||||
this(numWorkers);
|
||||
this.hostIp = hostIp;
|
||||
this.pythonExec = pythonExec;
|
||||
}
|
||||
|
||||
public void uncaughtException(Thread t, Throwable e) {
|
||||
logger.error("Uncaught exception thrown by worker:", e);
|
||||
try {
|
||||
@@ -126,12 +135,34 @@ public class RabitTracker implements IRabitTracker {
|
||||
}
|
||||
}
|
||||
|
||||
/** visible for testing */
|
||||
public String getRabitTrackerCommand() {
|
||||
StringBuilder sb = new StringBuilder();
|
||||
if (pythonExec == null || pythonExec.isEmpty()) {
|
||||
sb.append("python ");
|
||||
} else {
|
||||
sb.append(pythonExec + " ");
|
||||
}
|
||||
sb.append(" " + tracker_py + " ");
|
||||
sb.append(" --log-level=DEBUG" + " ");
|
||||
sb.append(" --num-workers=" + numWorkers + " ");
|
||||
|
||||
// we first check the property then check the parameter
|
||||
String hostIpFromProperties = trackerProperties.getHostIp();
|
||||
if(hostIpFromProperties != null && !hostIpFromProperties.isEmpty()) {
|
||||
logger.debug("Using provided host-ip: " + hostIpFromProperties + " from properties");
|
||||
sb.append(" --host-ip=" + hostIpFromProperties + " ");
|
||||
} else if (hostIp != null & !hostIp.isEmpty()) {
|
||||
logger.debug("Using the parametr host-ip: " + hostIp);
|
||||
sb.append(" --host-ip=" + hostIp + " ");
|
||||
}
|
||||
return sb.toString();
|
||||
}
|
||||
|
||||
private boolean startTrackerProcess() {
|
||||
try {
|
||||
String trackerExecString = this.addTrackerProperties("python " + tracker_py +
|
||||
" --log-level=DEBUG --num-workers=" + String.valueOf(numWorkers));
|
||||
|
||||
trackerProcess.set(Runtime.getRuntime().exec(trackerExecString));
|
||||
String cmd = getRabitTrackerCommand();
|
||||
trackerProcess.set(Runtime.getRuntime().exec(cmd));
|
||||
loadEnvs(trackerProcess.get().getInputStream());
|
||||
return true;
|
||||
} catch (IOException ioe) {
|
||||
@@ -140,18 +171,6 @@ public class RabitTracker implements IRabitTracker {
|
||||
}
|
||||
}
|
||||
|
||||
private String addTrackerProperties(String trackerExecString) {
|
||||
StringBuilder sb = new StringBuilder(trackerExecString);
|
||||
String hostIp = trackerProperties.getHostIp();
|
||||
|
||||
if(hostIp != null && !hostIp.isEmpty()){
|
||||
logger.debug("Using provided host-ip: " + hostIp);
|
||||
sb.append(" --host-ip=").append(hostIp);
|
||||
}
|
||||
|
||||
return sb.toString();
|
||||
}
|
||||
|
||||
public void stop() {
|
||||
if (trackerProcess.get() != null) {
|
||||
trackerProcess.get().destroy();
|
||||
|
||||
@@ -1 +1 @@
|
||||
1.6.0-dev
|
||||
1.6.1
|
||||
|
||||
@@ -12,7 +12,6 @@
|
||||
#include "xgboost/data.h"
|
||||
#include "xgboost/parameter.h"
|
||||
#include "xgboost/span.h"
|
||||
#include "xgboost/task.h"
|
||||
|
||||
namespace xgboost {
|
||||
namespace common {
|
||||
@@ -75,15 +74,20 @@ inline void InvalidCategory() {
|
||||
// values to be less than this last representable value.
|
||||
auto str = std::to_string(OutOfRangeCat());
|
||||
LOG(FATAL) << "Invalid categorical value detected. Categorical value should be non-negative, "
|
||||
"less than total umber of categories in training data and less than " +
|
||||
"less than total number of categories in training data and less than " +
|
||||
str;
|
||||
}
|
||||
|
||||
inline void CheckMaxCat(float max_cat, size_t n_categories) {
|
||||
CHECK_GE(max_cat + 1, n_categories)
|
||||
<< "Maximum cateogry should not be lesser than the total number of categories.";
|
||||
}
|
||||
|
||||
/*!
|
||||
* \brief Whether should we use onehot encoding for categorical data.
|
||||
*/
|
||||
XGBOOST_DEVICE inline bool UseOneHot(uint32_t n_cats, uint32_t max_cat_to_onehot, ObjInfo task) {
|
||||
bool use_one_hot = n_cats < max_cat_to_onehot || task.UseOneHot();
|
||||
XGBOOST_DEVICE inline bool UseOneHot(uint32_t n_cats, uint32_t max_cat_to_onehot) {
|
||||
bool use_one_hot = n_cats < max_cat_to_onehot;
|
||||
return use_one_hot;
|
||||
}
|
||||
|
||||
|
||||
@@ -164,6 +164,74 @@ class Range {
|
||||
Iterator end_;
|
||||
};
|
||||
|
||||
/**
|
||||
* \brief Transform iterator that takes an index and calls transform operator.
|
||||
*
|
||||
* This is CPU-only right now as taking host device function as operator complicates the
|
||||
* code. For device side one can use `thrust::transform_iterator` instead.
|
||||
*/
|
||||
template <typename Fn>
|
||||
class IndexTransformIter {
|
||||
size_t iter_{0};
|
||||
Fn fn_;
|
||||
|
||||
public:
|
||||
using iterator_category = std::random_access_iterator_tag; // NOLINT
|
||||
using value_type = std::result_of_t<Fn(size_t)>; // NOLINT
|
||||
using difference_type = detail::ptrdiff_t; // NOLINT
|
||||
using reference = std::add_lvalue_reference_t<value_type>; // NOLINT
|
||||
using pointer = std::add_pointer_t<value_type>; // NOLINT
|
||||
|
||||
public:
|
||||
/**
|
||||
* \param op Transform operator, takes a size_t index as input.
|
||||
*/
|
||||
explicit IndexTransformIter(Fn &&op) : fn_{op} {}
|
||||
IndexTransformIter(IndexTransformIter const &) = default;
|
||||
IndexTransformIter& operator=(IndexTransformIter&&) = default;
|
||||
IndexTransformIter& operator=(IndexTransformIter const& that) {
|
||||
iter_ = that.iter_;
|
||||
return *this;
|
||||
}
|
||||
|
||||
value_type operator*() const { return fn_(iter_); }
|
||||
|
||||
auto operator-(IndexTransformIter const &that) const { return iter_ - that.iter_; }
|
||||
bool operator==(IndexTransformIter const &that) const { return iter_ == that.iter_; }
|
||||
bool operator!=(IndexTransformIter const &that) const { return !(*this == that); }
|
||||
|
||||
IndexTransformIter &operator++() {
|
||||
iter_++;
|
||||
return *this;
|
||||
}
|
||||
IndexTransformIter operator++(int) {
|
||||
auto ret = *this;
|
||||
++(*this);
|
||||
return ret;
|
||||
}
|
||||
IndexTransformIter &operator+=(difference_type n) {
|
||||
iter_ += n;
|
||||
return *this;
|
||||
}
|
||||
IndexTransformIter &operator-=(difference_type n) {
|
||||
(*this) += -n;
|
||||
return *this;
|
||||
}
|
||||
IndexTransformIter operator+(difference_type n) const {
|
||||
auto ret = *this;
|
||||
return ret += n;
|
||||
}
|
||||
IndexTransformIter operator-(difference_type n) const {
|
||||
auto ret = *this;
|
||||
return ret -= n;
|
||||
}
|
||||
};
|
||||
|
||||
template <typename Fn>
|
||||
auto MakeIndexTransformIter(Fn&& fn) {
|
||||
return IndexTransformIter<Fn>(std::forward<Fn>(fn));
|
||||
}
|
||||
|
||||
int AllVisibleGPUs();
|
||||
|
||||
inline void AssertGPUSupport() {
|
||||
|
||||
@@ -468,11 +468,17 @@ void AddCutPoint(typename SketchType::SummaryContainer const &summary, int max_b
|
||||
}
|
||||
}
|
||||
|
||||
void AddCategories(std::set<float> const &categories, HistogramCuts *cuts) {
|
||||
auto &cut_values = cuts->cut_values_.HostVector();
|
||||
for (auto const &v : categories) {
|
||||
cut_values.push_back(AsCat(v));
|
||||
auto AddCategories(std::set<float> const &categories, HistogramCuts *cuts) {
|
||||
if (std::any_of(categories.cbegin(), categories.cend(), InvalidCat)) {
|
||||
InvalidCategory();
|
||||
}
|
||||
auto &cut_values = cuts->cut_values_.HostVector();
|
||||
auto max_cat = *std::max_element(categories.cbegin(), categories.cend());
|
||||
CheckMaxCat(max_cat, categories.size());
|
||||
for (bst_cat_t i = 0; i <= AsCat(max_cat); ++i) {
|
||||
cut_values.push_back(i);
|
||||
}
|
||||
return max_cat;
|
||||
}
|
||||
|
||||
template <typename WQSketch>
|
||||
@@ -505,11 +511,12 @@ void SketchContainerImpl<WQSketch>::MakeCuts(HistogramCuts* cuts) {
|
||||
}
|
||||
});
|
||||
|
||||
float max_cat{-1.f};
|
||||
for (size_t fid = 0; fid < reduced.size(); ++fid) {
|
||||
size_t max_num_bins = std::min(num_cuts[fid], max_bins_);
|
||||
typename WQSketch::SummaryContainer const& a = final_summaries[fid];
|
||||
if (IsCat(feature_types_, fid)) {
|
||||
AddCategories(categories_.at(fid), cuts);
|
||||
max_cat = std::max(max_cat, AddCategories(categories_.at(fid), cuts));
|
||||
} else {
|
||||
AddCutPoint<WQSketch>(a, max_num_bins, cuts);
|
||||
// push a value that is greater than anything
|
||||
@@ -527,30 +534,7 @@ void SketchContainerImpl<WQSketch>::MakeCuts(HistogramCuts* cuts) {
|
||||
cuts->cut_ptrs_.HostVector().push_back(cut_size);
|
||||
}
|
||||
|
||||
if (has_categorical_) {
|
||||
for (auto const &feat : categories_) {
|
||||
if (std::any_of(feat.cbegin(), feat.cend(), InvalidCat)) {
|
||||
InvalidCategory();
|
||||
}
|
||||
}
|
||||
auto const &ptrs = cuts->Ptrs();
|
||||
auto const &vals = cuts->Values();
|
||||
|
||||
float max_cat{-std::numeric_limits<float>::infinity()};
|
||||
for (size_t i = 1; i < ptrs.size(); ++i) {
|
||||
if (IsCat(feature_types_, i - 1)) {
|
||||
auto beg = ptrs[i - 1];
|
||||
auto end = ptrs[i];
|
||||
auto feat = Span<float const>{vals}.subspan(beg, end - beg);
|
||||
auto max_elem = *std::max_element(feat.cbegin(), feat.cend());
|
||||
if (max_elem > max_cat) {
|
||||
max_cat = max_elem;
|
||||
}
|
||||
}
|
||||
}
|
||||
cuts->SetCategorical(true, max_cat);
|
||||
}
|
||||
|
||||
cuts->SetCategorical(this->has_categorical_, max_cat);
|
||||
monitor_.Stop(__func__);
|
||||
}
|
||||
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
/*!
|
||||
* Copyright 2020 by XGBoost Contributors
|
||||
* Copyright 2020-2022 by XGBoost Contributors
|
||||
*/
|
||||
#include <thrust/binary_search.h>
|
||||
#include <thrust/execution_policy.h>
|
||||
@@ -583,13 +583,13 @@ void SketchContainer::AllReduce() {
|
||||
|
||||
namespace {
|
||||
struct InvalidCatOp {
|
||||
Span<float const> values;
|
||||
Span<uint32_t const> ptrs;
|
||||
Span<SketchEntry const> values;
|
||||
Span<size_t const> ptrs;
|
||||
Span<FeatureType const> ft;
|
||||
|
||||
XGBOOST_DEVICE bool operator()(size_t i) const {
|
||||
auto fidx = dh::SegmentId(ptrs, i);
|
||||
return IsCat(ft, fidx) && InvalidCat(values[i]);
|
||||
return IsCat(ft, fidx) && InvalidCat(values[i].value);
|
||||
}
|
||||
};
|
||||
} // anonymous namespace
|
||||
@@ -611,7 +611,7 @@ void SketchContainer::MakeCuts(HistogramCuts* p_cuts) {
|
||||
|
||||
p_cuts->min_vals_.SetDevice(device_);
|
||||
auto d_min_values = p_cuts->min_vals_.DeviceSpan();
|
||||
auto in_cut_values = dh::ToSpan(this->Current());
|
||||
auto const in_cut_values = dh::ToSpan(this->Current());
|
||||
|
||||
// Set up output ptr
|
||||
p_cuts->cut_ptrs_.SetDevice(device_);
|
||||
@@ -619,26 +619,70 @@ void SketchContainer::MakeCuts(HistogramCuts* p_cuts) {
|
||||
h_out_columns_ptr.clear();
|
||||
h_out_columns_ptr.push_back(0);
|
||||
auto const& h_feature_types = this->feature_types_.ConstHostSpan();
|
||||
for (bst_feature_t i = 0; i < num_columns_; ++i) {
|
||||
size_t column_size = std::max(static_cast<size_t>(1ul),
|
||||
this->Column(i).size());
|
||||
if (IsCat(h_feature_types, i)) {
|
||||
h_out_columns_ptr.push_back(static_cast<size_t>(column_size));
|
||||
} else {
|
||||
h_out_columns_ptr.push_back(std::min(static_cast<size_t>(column_size),
|
||||
static_cast<size_t>(num_bins_)));
|
||||
|
||||
auto d_ft = feature_types_.ConstDeviceSpan();
|
||||
|
||||
std::vector<SketchEntry> max_values;
|
||||
float max_cat{-1.f};
|
||||
if (has_categorical_) {
|
||||
dh::XGBCachingDeviceAllocator<char> alloc;
|
||||
auto key_it = dh::MakeTransformIterator<bst_feature_t>(
|
||||
thrust::make_counting_iterator(0ul), [=] XGBOOST_DEVICE(size_t i) -> bst_feature_t {
|
||||
return dh::SegmentId(d_in_columns_ptr, i);
|
||||
});
|
||||
auto invalid_op = InvalidCatOp{in_cut_values, d_in_columns_ptr, d_ft};
|
||||
auto val_it = dh::MakeTransformIterator<SketchEntry>(
|
||||
thrust::make_counting_iterator(0ul), [=] XGBOOST_DEVICE(size_t i) {
|
||||
auto fidx = dh::SegmentId(d_in_columns_ptr, i);
|
||||
auto v = in_cut_values[i];
|
||||
if (IsCat(d_ft, fidx)) {
|
||||
if (invalid_op(i)) {
|
||||
// use inf to indicate invalid value, this way we can keep it as in
|
||||
// indicator in the reduce operation as it's always the greatest value.
|
||||
v.value = std::numeric_limits<float>::infinity();
|
||||
}
|
||||
}
|
||||
return v;
|
||||
});
|
||||
CHECK_EQ(num_columns_, d_in_columns_ptr.size() - 1);
|
||||
max_values.resize(d_in_columns_ptr.size() - 1);
|
||||
dh::caching_device_vector<SketchEntry> d_max_values(d_in_columns_ptr.size() - 1);
|
||||
thrust::reduce_by_key(thrust::cuda::par(alloc), key_it, key_it + in_cut_values.size(), val_it,
|
||||
thrust::make_discard_iterator(), d_max_values.begin(),
|
||||
thrust::equal_to<bst_feature_t>{},
|
||||
[] __device__(auto l, auto r) { return l.value > r.value ? l : r; });
|
||||
dh::CopyDeviceSpanToVector(&max_values, dh::ToSpan(d_max_values));
|
||||
auto max_it = common::MakeIndexTransformIter([&](auto i) {
|
||||
if (IsCat(h_feature_types, i)) {
|
||||
return max_values[i].value;
|
||||
}
|
||||
return -1.f;
|
||||
});
|
||||
max_cat = *std::max_element(max_it, max_it + max_values.size());
|
||||
if (std::isinf(max_cat)) {
|
||||
InvalidCategory();
|
||||
}
|
||||
}
|
||||
std::partial_sum(h_out_columns_ptr.begin(), h_out_columns_ptr.end(),
|
||||
h_out_columns_ptr.begin());
|
||||
auto d_out_columns_ptr = p_cuts->cut_ptrs_.ConstDeviceSpan();
|
||||
|
||||
// Set up output cuts
|
||||
for (bst_feature_t i = 0; i < num_columns_; ++i) {
|
||||
size_t column_size = std::max(static_cast<size_t>(1ul), this->Column(i).size());
|
||||
if (IsCat(h_feature_types, i)) {
|
||||
// column_size is the number of unique values in that feature.
|
||||
CheckMaxCat(max_values[i].value, column_size);
|
||||
h_out_columns_ptr.push_back(max_values[i].value + 1); // includes both max_cat and 0.
|
||||
} else {
|
||||
h_out_columns_ptr.push_back(
|
||||
std::min(static_cast<size_t>(column_size), static_cast<size_t>(num_bins_)));
|
||||
}
|
||||
}
|
||||
std::partial_sum(h_out_columns_ptr.begin(), h_out_columns_ptr.end(), h_out_columns_ptr.begin());
|
||||
auto d_out_columns_ptr = p_cuts->cut_ptrs_.ConstDeviceSpan();
|
||||
|
||||
size_t total_bins = h_out_columns_ptr.back();
|
||||
p_cuts->cut_values_.SetDevice(device_);
|
||||
p_cuts->cut_values_.Resize(total_bins);
|
||||
auto out_cut_values = p_cuts->cut_values_.DeviceSpan();
|
||||
auto d_ft = feature_types_.ConstDeviceSpan();
|
||||
|
||||
dh::LaunchN(total_bins, [=] __device__(size_t idx) {
|
||||
auto column_id = dh::SegmentId(d_out_columns_ptr, idx);
|
||||
@@ -667,8 +711,7 @@ void SketchContainer::MakeCuts(HistogramCuts* p_cuts) {
|
||||
}
|
||||
|
||||
if (IsCat(d_ft, column_id)) {
|
||||
assert(out_column.size() == in_column.size());
|
||||
out_column[idx] = in_column[idx].value;
|
||||
out_column[idx] = idx;
|
||||
return;
|
||||
}
|
||||
|
||||
@@ -684,36 +727,7 @@ void SketchContainer::MakeCuts(HistogramCuts* p_cuts) {
|
||||
out_column[idx] = in_column[idx+1].value;
|
||||
});
|
||||
|
||||
float max_cat{-1.0f};
|
||||
if (has_categorical_) {
|
||||
auto invalid_op = InvalidCatOp{out_cut_values, d_out_columns_ptr, d_ft};
|
||||
auto it = dh::MakeTransformIterator<thrust::pair<bool, float>>(
|
||||
thrust::make_counting_iterator(0ul), [=] XGBOOST_DEVICE(size_t i) {
|
||||
auto fidx = dh::SegmentId(d_out_columns_ptr, i);
|
||||
if (IsCat(d_ft, fidx)) {
|
||||
auto invalid = invalid_op(i);
|
||||
auto v = out_cut_values[i];
|
||||
return thrust::make_pair(invalid, v);
|
||||
}
|
||||
return thrust::make_pair(false, std::numeric_limits<float>::min());
|
||||
});
|
||||
|
||||
bool invalid{false};
|
||||
dh::XGBCachingDeviceAllocator<char> alloc;
|
||||
thrust::tie(invalid, max_cat) =
|
||||
thrust::reduce(thrust::cuda::par(alloc), it, it + out_cut_values.size(),
|
||||
thrust::make_pair(false, std::numeric_limits<float>::min()),
|
||||
[=] XGBOOST_DEVICE(thrust::pair<bool, bst_cat_t> const &l,
|
||||
thrust::pair<bool, bst_cat_t> const &r) {
|
||||
return thrust::make_pair(l.first || r.first, std::max(l.second, r.second));
|
||||
});
|
||||
if (invalid) {
|
||||
InvalidCategory();
|
||||
}
|
||||
}
|
||||
|
||||
p_cuts->SetCategorical(this->has_categorical_, max_cat);
|
||||
|
||||
timer_.Stop(__func__);
|
||||
}
|
||||
} // namespace common
|
||||
|
||||
@@ -419,6 +419,7 @@ class LearnerConfiguration : public Learner {
|
||||
obj_.reset(ObjFunction::Create(tparam_.objective, &generic_parameters_));
|
||||
}
|
||||
obj_->LoadConfig(objective_fn);
|
||||
learner_model_param_.task = obj_->Task();
|
||||
|
||||
tparam_.booster = get<String>(gradient_booster["name"]);
|
||||
if (!gbm_) {
|
||||
|
||||
@@ -199,13 +199,11 @@ __device__ void EvaluateFeature(
|
||||
}
|
||||
|
||||
template <int BLOCK_THREADS, typename GradientSumT>
|
||||
__global__ void EvaluateSplitsKernel(
|
||||
EvaluateSplitInputs<GradientSumT> left,
|
||||
EvaluateSplitInputs<GradientSumT> right,
|
||||
ObjInfo task,
|
||||
common::Span<bst_feature_t> sorted_idx,
|
||||
TreeEvaluator::SplitEvaluator<GPUTrainingParam> evaluator,
|
||||
common::Span<DeviceSplitCandidate> out_candidates) {
|
||||
__global__ void EvaluateSplitsKernel(EvaluateSplitInputs<GradientSumT> left,
|
||||
EvaluateSplitInputs<GradientSumT> right,
|
||||
common::Span<bst_feature_t> sorted_idx,
|
||||
TreeEvaluator::SplitEvaluator<GPUTrainingParam> evaluator,
|
||||
common::Span<DeviceSplitCandidate> out_candidates) {
|
||||
// KeyValuePair here used as threadIdx.x -> gain_value
|
||||
using ArgMaxT = cub::KeyValuePair<int, float>;
|
||||
using BlockScanT =
|
||||
@@ -241,7 +239,7 @@ __global__ void EvaluateSplitsKernel(
|
||||
|
||||
if (common::IsCat(inputs.feature_types, fidx)) {
|
||||
auto n_bins_in_feat = inputs.feature_segments[fidx + 1] - inputs.feature_segments[fidx];
|
||||
if (common::UseOneHot(n_bins_in_feat, inputs.param.max_cat_to_onehot, task)) {
|
||||
if (common::UseOneHot(n_bins_in_feat, inputs.param.max_cat_to_onehot)) {
|
||||
EvaluateFeature<BLOCK_THREADS, SumReduceT, BlockScanT, MaxReduceT, TempStorage, GradientSumT,
|
||||
kOneHot>(fidx, inputs, evaluator, sorted_idx, 0, &best_split, &temp_storage);
|
||||
} else {
|
||||
@@ -310,7 +308,7 @@ __device__ void SortBasedSplit(EvaluateSplitInputs<GradientSumT> const &input,
|
||||
|
||||
template <typename GradientSumT>
|
||||
void GPUHistEvaluator<GradientSumT>::EvaluateSplits(
|
||||
EvaluateSplitInputs<GradientSumT> left, EvaluateSplitInputs<GradientSumT> right, ObjInfo task,
|
||||
EvaluateSplitInputs<GradientSumT> left, EvaluateSplitInputs<GradientSumT> right,
|
||||
TreeEvaluator::SplitEvaluator<GPUTrainingParam> evaluator,
|
||||
common::Span<DeviceSplitCandidate> out_splits) {
|
||||
if (!split_cats_.empty()) {
|
||||
@@ -323,7 +321,7 @@ void GPUHistEvaluator<GradientSumT>::EvaluateSplits(
|
||||
// One block for each feature
|
||||
uint32_t constexpr kBlockThreads = 256;
|
||||
dh::LaunchKernel {static_cast<uint32_t>(combined_num_features), kBlockThreads, 0}(
|
||||
EvaluateSplitsKernel<kBlockThreads, GradientSumT>, left, right, task, this->SortedIdx(left),
|
||||
EvaluateSplitsKernel<kBlockThreads, GradientSumT>, left, right, this->SortedIdx(left),
|
||||
evaluator, dh::ToSpan(feature_best_splits));
|
||||
|
||||
// Reduce to get best candidate for left and right child over all features
|
||||
@@ -365,7 +363,7 @@ void GPUHistEvaluator<GradientSumT>::CopyToHost(EvaluateSplitInputs<GradientSumT
|
||||
}
|
||||
|
||||
template <typename GradientSumT>
|
||||
void GPUHistEvaluator<GradientSumT>::EvaluateSplits(GPUExpandEntry candidate, ObjInfo task,
|
||||
void GPUHistEvaluator<GradientSumT>::EvaluateSplits(GPUExpandEntry candidate,
|
||||
EvaluateSplitInputs<GradientSumT> left,
|
||||
EvaluateSplitInputs<GradientSumT> right,
|
||||
common::Span<GPUExpandEntry> out_entries) {
|
||||
@@ -373,7 +371,7 @@ void GPUHistEvaluator<GradientSumT>::EvaluateSplits(GPUExpandEntry candidate, Ob
|
||||
|
||||
dh::TemporaryArray<DeviceSplitCandidate> splits_out_storage(2);
|
||||
auto out_splits = dh::ToSpan(splits_out_storage);
|
||||
this->EvaluateSplits(left, right, task, evaluator, out_splits);
|
||||
this->EvaluateSplits(left, right, evaluator, out_splits);
|
||||
|
||||
auto d_sorted_idx = this->SortedIdx(left);
|
||||
auto d_entries = out_entries;
|
||||
@@ -385,7 +383,7 @@ void GPUHistEvaluator<GradientSumT>::EvaluateSplits(GPUExpandEntry candidate, Ob
|
||||
auto fidx = out_splits[i].findex;
|
||||
|
||||
if (split.is_cat &&
|
||||
!common::UseOneHot(input.FeatureBins(fidx), input.param.max_cat_to_onehot, task)) {
|
||||
!common::UseOneHot(input.FeatureBins(fidx), input.param.max_cat_to_onehot)) {
|
||||
bool is_left = i == 0;
|
||||
auto out = is_left ? cats_out.first(cats_out.size() / 2) : cats_out.last(cats_out.size() / 2);
|
||||
SortBasedSplit(input, d_sorted_idx, fidx, is_left, out, &out_splits[i]);
|
||||
@@ -405,11 +403,11 @@ void GPUHistEvaluator<GradientSumT>::EvaluateSplits(GPUExpandEntry candidate, Ob
|
||||
|
||||
template <typename GradientSumT>
|
||||
GPUExpandEntry GPUHistEvaluator<GradientSumT>::EvaluateSingleSplit(
|
||||
EvaluateSplitInputs<GradientSumT> input, float weight, ObjInfo task) {
|
||||
EvaluateSplitInputs<GradientSumT> input, float weight) {
|
||||
dh::TemporaryArray<DeviceSplitCandidate> splits_out(1);
|
||||
auto out_split = dh::ToSpan(splits_out);
|
||||
auto evaluator = tree_evaluator_.GetEvaluator<GPUTrainingParam>();
|
||||
this->EvaluateSplits(input, {}, task, evaluator, out_split);
|
||||
this->EvaluateSplits(input, {}, evaluator, out_split);
|
||||
|
||||
auto cats_out = this->DeviceCatStorage(input.nidx);
|
||||
auto d_sorted_idx = this->SortedIdx(input);
|
||||
@@ -421,7 +419,7 @@ GPUExpandEntry GPUHistEvaluator<GradientSumT>::EvaluateSingleSplit(
|
||||
auto fidx = out_split[i].findex;
|
||||
|
||||
if (split.is_cat &&
|
||||
!common::UseOneHot(input.FeatureBins(fidx), input.param.max_cat_to_onehot, task)) {
|
||||
!common::UseOneHot(input.FeatureBins(fidx), input.param.max_cat_to_onehot)) {
|
||||
SortBasedSplit(input, d_sorted_idx, fidx, true, cats_out, &out_split[i]);
|
||||
}
|
||||
|
||||
|
||||
@@ -114,7 +114,7 @@ class GPUHistEvaluator {
|
||||
/**
|
||||
* \brief Reset the evaluator, should be called before any use.
|
||||
*/
|
||||
void Reset(common::HistogramCuts const &cuts, common::Span<FeatureType const> ft, ObjInfo task,
|
||||
void Reset(common::HistogramCuts const &cuts, common::Span<FeatureType const> ft,
|
||||
bst_feature_t n_features, TrainParam const ¶m, int32_t device);
|
||||
|
||||
/**
|
||||
@@ -150,21 +150,20 @@ class GPUHistEvaluator {
|
||||
|
||||
// impl of evaluate splits, contains CUDA kernels so it's public
|
||||
void EvaluateSplits(EvaluateSplitInputs<GradientSumT> left,
|
||||
EvaluateSplitInputs<GradientSumT> right, ObjInfo task,
|
||||
EvaluateSplitInputs<GradientSumT> right,
|
||||
TreeEvaluator::SplitEvaluator<GPUTrainingParam> evaluator,
|
||||
common::Span<DeviceSplitCandidate> out_splits);
|
||||
/**
|
||||
* \brief Evaluate splits for left and right nodes.
|
||||
*/
|
||||
void EvaluateSplits(GPUExpandEntry candidate, ObjInfo task,
|
||||
void EvaluateSplits(GPUExpandEntry candidate,
|
||||
EvaluateSplitInputs<GradientSumT> left,
|
||||
EvaluateSplitInputs<GradientSumT> right,
|
||||
common::Span<GPUExpandEntry> out_splits);
|
||||
/**
|
||||
* \brief Evaluate splits for root node.
|
||||
*/
|
||||
GPUExpandEntry EvaluateSingleSplit(EvaluateSplitInputs<GradientSumT> input, float weight,
|
||||
ObjInfo task);
|
||||
GPUExpandEntry EvaluateSingleSplit(EvaluateSplitInputs<GradientSumT> input, float weight);
|
||||
};
|
||||
} // namespace tree
|
||||
} // namespace xgboost
|
||||
|
||||
@@ -16,12 +16,12 @@ namespace xgboost {
|
||||
namespace tree {
|
||||
template <typename GradientSumT>
|
||||
void GPUHistEvaluator<GradientSumT>::Reset(common::HistogramCuts const &cuts,
|
||||
common::Span<FeatureType const> ft, ObjInfo task,
|
||||
common::Span<FeatureType const> ft,
|
||||
bst_feature_t n_features, TrainParam const ¶m,
|
||||
int32_t device) {
|
||||
param_ = param;
|
||||
tree_evaluator_ = TreeEvaluator{param, n_features, device};
|
||||
if (cuts.HasCategorical() && !task.UseOneHot()) {
|
||||
if (cuts.HasCategorical()) {
|
||||
dh::XGBCachingDeviceAllocator<char> alloc;
|
||||
auto ptrs = cuts.cut_ptrs_.ConstDeviceSpan();
|
||||
auto beg = thrust::make_counting_iterator<size_t>(1ul);
|
||||
@@ -34,7 +34,7 @@ void GPUHistEvaluator<GradientSumT>::Reset(common::HistogramCuts const &cuts,
|
||||
auto idx = i - 1;
|
||||
if (common::IsCat(ft, idx)) {
|
||||
auto n_bins = ptrs[i] - ptrs[idx];
|
||||
bool use_sort = !common::UseOneHot(n_bins, to_onehot, task);
|
||||
bool use_sort = !common::UseOneHot(n_bins, to_onehot);
|
||||
return use_sort;
|
||||
}
|
||||
return false;
|
||||
|
||||
@@ -11,7 +11,6 @@
|
||||
#include <utility>
|
||||
#include <vector>
|
||||
|
||||
#include "xgboost/task.h"
|
||||
#include "../param.h"
|
||||
#include "../constraints.h"
|
||||
#include "../split_evaluator.h"
|
||||
@@ -39,7 +38,6 @@ template <typename GradientSumT, typename ExpandEntry> class HistEvaluator {
|
||||
int32_t n_threads_ {0};
|
||||
FeatureInteractionConstraintHost interaction_constraints_;
|
||||
std::vector<NodeEntry> snode_;
|
||||
ObjInfo task_;
|
||||
|
||||
// if sum of statistics for non-missing values in the node
|
||||
// is equal to sum of statistics for all values:
|
||||
@@ -244,7 +242,7 @@ template <typename GradientSumT, typename ExpandEntry> class HistEvaluator {
|
||||
}
|
||||
if (is_cat) {
|
||||
auto n_bins = cut_ptrs.at(fidx + 1) - cut_ptrs[fidx];
|
||||
if (common::UseOneHot(n_bins, param_.max_cat_to_onehot, task_)) {
|
||||
if (common::UseOneHot(n_bins, param_.max_cat_to_onehot)) {
|
||||
EnumerateSplit<+1, kOneHot>(cut, {}, histogram, fidx, nidx, evaluator, best);
|
||||
EnumerateSplit<-1, kOneHot>(cut, {}, histogram, fidx, nidx, evaluator, best);
|
||||
} else {
|
||||
@@ -345,7 +343,6 @@ template <typename GradientSumT, typename ExpandEntry> class HistEvaluator {
|
||||
|
||||
auto Evaluator() const { return tree_evaluator_.GetEvaluator(); }
|
||||
auto const& Stats() const { return snode_; }
|
||||
auto Task() const { return task_; }
|
||||
|
||||
float InitRoot(GradStats const& root_sum) {
|
||||
snode_.resize(1);
|
||||
@@ -363,12 +360,11 @@ template <typename GradientSumT, typename ExpandEntry> class HistEvaluator {
|
||||
// The column sampler must be constructed by caller since we need to preserve the rng
|
||||
// for the entire training session.
|
||||
explicit HistEvaluator(TrainParam const ¶m, MetaInfo const &info, int32_t n_threads,
|
||||
std::shared_ptr<common::ColumnSampler> sampler, ObjInfo task)
|
||||
std::shared_ptr<common::ColumnSampler> sampler)
|
||||
: param_{param},
|
||||
column_sampler_{std::move(sampler)},
|
||||
tree_evaluator_{param, static_cast<bst_feature_t>(info.num_col_), GenericParameter::kCpuId},
|
||||
n_threads_{n_threads},
|
||||
task_{task} {
|
||||
n_threads_{n_threads} {
|
||||
interaction_constraints_.Configure(param, info.num_col_);
|
||||
column_sampler_->Init(info.num_col_, info.feature_weights.HostVector(), param_.colsample_bynode,
|
||||
param_.colsample_bylevel, param_.colsample_bytree);
|
||||
|
||||
@@ -28,10 +28,8 @@ DMLC_REGISTRY_FILE_TAG(updater_approx);
|
||||
|
||||
namespace {
|
||||
// Return the BatchParam used by DMatrix.
|
||||
template <typename GradientSumT>
|
||||
auto BatchSpec(TrainParam const &p, common::Span<float> hess,
|
||||
HistEvaluator<GradientSumT, CPUExpandEntry> const &evaluator) {
|
||||
return BatchParam{p.max_bin, hess, !evaluator.Task().const_hess};
|
||||
auto BatchSpec(TrainParam const &p, common::Span<float> hess, ObjInfo const task) {
|
||||
return BatchParam{p.max_bin, hess, !task.const_hess};
|
||||
}
|
||||
|
||||
auto BatchSpec(TrainParam const &p, common::Span<float> hess) {
|
||||
@@ -46,7 +44,8 @@ class GloablApproxBuilder {
|
||||
std::shared_ptr<common::ColumnSampler> col_sampler_;
|
||||
HistEvaluator<GradientSumT, CPUExpandEntry> evaluator_;
|
||||
HistogramBuilder<GradientSumT, CPUExpandEntry> histogram_builder_;
|
||||
GenericParameter const *ctx_;
|
||||
Context const *ctx_;
|
||||
ObjInfo const task_;
|
||||
|
||||
std::vector<ApproxRowPartitioner> partitioner_;
|
||||
// Pointer to last updated tree, used for update prediction cache.
|
||||
@@ -64,8 +63,7 @@ class GloablApproxBuilder {
|
||||
int32_t n_total_bins = 0;
|
||||
partitioner_.clear();
|
||||
// Generating the GHistIndexMatrix is quite slow, is there a way to speed it up?
|
||||
for (auto const &page :
|
||||
p_fmat->GetBatches<GHistIndexMatrix>(BatchSpec(param_, hess, evaluator_))) {
|
||||
for (auto const &page : p_fmat->GetBatches<GHistIndexMatrix>(BatchSpec(param_, hess, task_))) {
|
||||
if (n_total_bins == 0) {
|
||||
n_total_bins = page.cut.TotalBins();
|
||||
feature_values_ = page.cut;
|
||||
@@ -160,8 +158,9 @@ class GloablApproxBuilder {
|
||||
common::Monitor *monitor)
|
||||
: param_{std::move(param)},
|
||||
col_sampler_{std::move(column_sampler)},
|
||||
evaluator_{param_, info, ctx->Threads(), col_sampler_, task},
|
||||
evaluator_{param_, info, ctx->Threads(), col_sampler_},
|
||||
ctx_{ctx},
|
||||
task_{task},
|
||||
monitor_{monitor} {}
|
||||
|
||||
void UpdateTree(RegTree *p_tree, std::vector<GradientPair> const &gpair, common::Span<float> hess,
|
||||
|
||||
@@ -229,16 +229,14 @@ struct GPUHistMakerDevice {
|
||||
// Reset values for each update iteration
|
||||
// Note that the column sampler must be passed by value because it is not
|
||||
// thread safe
|
||||
void Reset(HostDeviceVector<GradientPair>* dh_gpair, DMatrix* dmat, int64_t num_columns,
|
||||
ObjInfo task) {
|
||||
void Reset(HostDeviceVector<GradientPair>* dh_gpair, DMatrix* dmat, int64_t num_columns) {
|
||||
auto const& info = dmat->Info();
|
||||
this->column_sampler.Init(num_columns, info.feature_weights.HostVector(),
|
||||
param.colsample_bynode, param.colsample_bylevel,
|
||||
param.colsample_bytree);
|
||||
dh::safe_cuda(cudaSetDevice(device_id));
|
||||
|
||||
this->evaluator_.Reset(page->Cuts(), feature_types, task, dmat->Info().num_col_, param,
|
||||
device_id);
|
||||
this->evaluator_.Reset(page->Cuts(), feature_types, dmat->Info().num_col_, param, device_id);
|
||||
|
||||
this->interaction_constraints.Reset();
|
||||
std::fill(node_sum_gradients.begin(), node_sum_gradients.end(), GradientPairPrecise{});
|
||||
@@ -260,7 +258,7 @@ struct GPUHistMakerDevice {
|
||||
hist.Reset();
|
||||
}
|
||||
|
||||
GPUExpandEntry EvaluateRootSplit(GradientPairPrecise root_sum, float weight, ObjInfo task) {
|
||||
GPUExpandEntry EvaluateRootSplit(GradientPairPrecise root_sum, float weight) {
|
||||
int nidx = RegTree::kRoot;
|
||||
GPUTrainingParam gpu_param(param);
|
||||
auto sampled_features = column_sampler.GetFeatureSet(0);
|
||||
@@ -277,12 +275,12 @@ struct GPUHistMakerDevice {
|
||||
matrix.gidx_fvalue_map,
|
||||
matrix.min_fvalue,
|
||||
hist.GetNodeHistogram(nidx)};
|
||||
auto split = this->evaluator_.EvaluateSingleSplit(inputs, weight, task);
|
||||
auto split = this->evaluator_.EvaluateSingleSplit(inputs, weight);
|
||||
return split;
|
||||
}
|
||||
|
||||
void EvaluateLeftRightSplits(GPUExpandEntry candidate, ObjInfo task, int left_nidx,
|
||||
int right_nidx, const RegTree& tree,
|
||||
void EvaluateLeftRightSplits(GPUExpandEntry candidate, int left_nidx, int right_nidx,
|
||||
const RegTree& tree,
|
||||
common::Span<GPUExpandEntry> pinned_candidates_out) {
|
||||
dh::TemporaryArray<DeviceSplitCandidate> splits_out(2);
|
||||
GPUTrainingParam gpu_param(param);
|
||||
@@ -316,7 +314,7 @@ struct GPUHistMakerDevice {
|
||||
hist.GetNodeHistogram(right_nidx)};
|
||||
|
||||
dh::TemporaryArray<GPUExpandEntry> entries(2);
|
||||
this->evaluator_.EvaluateSplits(candidate, task, left, right, dh::ToSpan(entries));
|
||||
this->evaluator_.EvaluateSplits(candidate, left, right, dh::ToSpan(entries));
|
||||
dh::safe_cuda(cudaMemcpyAsync(pinned_candidates_out.data(), entries.data().get(),
|
||||
sizeof(GPUExpandEntry) * entries.size(), cudaMemcpyDeviceToHost));
|
||||
}
|
||||
@@ -584,7 +582,7 @@ struct GPUHistMakerDevice {
|
||||
tree[candidate.nid].RightChild());
|
||||
}
|
||||
|
||||
GPUExpandEntry InitRoot(RegTree* p_tree, ObjInfo task, dh::AllReducer* reducer) {
|
||||
GPUExpandEntry InitRoot(RegTree* p_tree, dh::AllReducer* reducer) {
|
||||
constexpr bst_node_t kRootNIdx = 0;
|
||||
dh::XGBCachingDeviceAllocator<char> alloc;
|
||||
auto gpair_it = dh::MakeTransformIterator<GradientPairPrecise>(
|
||||
@@ -605,7 +603,7 @@ struct GPUHistMakerDevice {
|
||||
(*p_tree)[kRootNIdx].SetLeaf(param.learning_rate * weight);
|
||||
|
||||
// Generate first split
|
||||
auto root_entry = this->EvaluateRootSplit(root_sum, weight, task);
|
||||
auto root_entry = this->EvaluateRootSplit(root_sum, weight);
|
||||
return root_entry;
|
||||
}
|
||||
|
||||
@@ -615,11 +613,11 @@ struct GPUHistMakerDevice {
|
||||
Driver<GPUExpandEntry> driver(static_cast<TrainParam::TreeGrowPolicy>(param.grow_policy));
|
||||
|
||||
monitor.Start("Reset");
|
||||
this->Reset(gpair_all, p_fmat, p_fmat->Info().num_col_, task);
|
||||
this->Reset(gpair_all, p_fmat, p_fmat->Info().num_col_);
|
||||
monitor.Stop("Reset");
|
||||
|
||||
monitor.Start("InitRoot");
|
||||
driver.Push({ this->InitRoot(p_tree, task, reducer) });
|
||||
driver.Push({ this->InitRoot(p_tree, reducer) });
|
||||
monitor.Stop("InitRoot");
|
||||
|
||||
auto num_leaves = 1;
|
||||
@@ -656,7 +654,7 @@ struct GPUHistMakerDevice {
|
||||
monitor.Stop("BuildHist");
|
||||
|
||||
monitor.Start("EvaluateSplits");
|
||||
this->EvaluateLeftRightSplits(candidate, task, left_child_nidx, right_child_nidx, *p_tree,
|
||||
this->EvaluateLeftRightSplits(candidate, left_child_nidx, right_child_nidx, *p_tree,
|
||||
new_candidates.subspan(i * 2, 2));
|
||||
monitor.Stop("EvaluateSplits");
|
||||
} else {
|
||||
|
||||
@@ -342,7 +342,7 @@ void QuantileHistMaker::Builder<GradientSumT>::InitData(DMatrix *fmat, const Reg
|
||||
// store a pointer to the tree
|
||||
p_last_tree_ = &tree;
|
||||
evaluator_.reset(new HistEvaluator<GradientSumT, CPUExpandEntry>{
|
||||
param_, info, this->ctx_->Threads(), column_sampler_, task_});
|
||||
param_, info, this->ctx_->Threads(), column_sampler_});
|
||||
|
||||
monitor_->Stop(__func__);
|
||||
}
|
||||
|
||||
@@ -14,7 +14,6 @@ dependencies:
|
||||
- jsonschema
|
||||
- cupy
|
||||
- python-graphviz
|
||||
- modin-ray
|
||||
- pip
|
||||
- py-ubjson
|
||||
- cffi
|
||||
|
||||
@@ -2,6 +2,7 @@ import sys
|
||||
import os
|
||||
from contextlib import contextmanager
|
||||
|
||||
|
||||
@contextmanager
|
||||
def cd(path):
|
||||
path = os.path.normpath(path)
|
||||
@@ -13,10 +14,12 @@ def cd(path):
|
||||
finally:
|
||||
os.chdir(cwd)
|
||||
|
||||
|
||||
if len(sys.argv) != 4:
|
||||
print('Usage: {} [wheel to rename] [commit id] [platform tag]'.format(sys.argv[0]))
|
||||
sys.exit(1)
|
||||
|
||||
|
||||
whl_path = sys.argv[1]
|
||||
commit_id = sys.argv[2]
|
||||
platform_tag = sys.argv[3]
|
||||
@@ -36,3 +39,7 @@ with cd(dirname):
|
||||
if os.path.isfile(new_name):
|
||||
os.remove(new_name)
|
||||
os.rename(basename, new_name)
|
||||
|
||||
filesize = os.path.getsize(new_name) / 1024 / 1024 # MB
|
||||
msg = f"Limit of wheel size set by PyPI is exceeded. {new_name}: {filesize}"
|
||||
assert filesize <= 200, msg
|
||||
|
||||
@@ -57,8 +57,7 @@ void TestEvaluateSingleSplit(bool is_categorical) {
|
||||
GPUHistEvaluator<GradientPair> evaluator{
|
||||
tparam, static_cast<bst_feature_t>(feature_min_values.size()), 0};
|
||||
dh::device_vector<common::CatBitField::value_type> out_cats;
|
||||
DeviceSplitCandidate result =
|
||||
evaluator.EvaluateSingleSplit(input, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
DeviceSplitCandidate result = evaluator.EvaluateSingleSplit(input, 0).split;
|
||||
|
||||
EXPECT_EQ(result.findex, 1);
|
||||
EXPECT_EQ(result.fvalue, 11.0);
|
||||
@@ -101,8 +100,7 @@ TEST(GpuHist, EvaluateSingleSplitMissing) {
|
||||
dh::ToSpan(feature_histogram)};
|
||||
|
||||
GPUHistEvaluator<GradientPair> evaluator(tparam, feature_set.size(), 0);
|
||||
DeviceSplitCandidate result =
|
||||
evaluator.EvaluateSingleSplit(input, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
DeviceSplitCandidate result = evaluator.EvaluateSingleSplit(input, 0).split;
|
||||
|
||||
EXPECT_EQ(result.findex, 0);
|
||||
EXPECT_EQ(result.fvalue, 1.0);
|
||||
@@ -114,10 +112,8 @@ TEST(GpuHist, EvaluateSingleSplitMissing) {
|
||||
TEST(GpuHist, EvaluateSingleSplitEmpty) {
|
||||
TrainParam tparam = ZeroParam();
|
||||
GPUHistEvaluator<GradientPair> evaluator(tparam, 1, 0);
|
||||
DeviceSplitCandidate result = evaluator
|
||||
.EvaluateSingleSplit(EvaluateSplitInputs<GradientPair>{}, 0,
|
||||
ObjInfo{ObjInfo::kRegression})
|
||||
.split;
|
||||
DeviceSplitCandidate result =
|
||||
evaluator.EvaluateSingleSplit(EvaluateSplitInputs<GradientPair>{}, 0).split;
|
||||
EXPECT_EQ(result.findex, -1);
|
||||
EXPECT_LT(result.loss_chg, 0.0f);
|
||||
}
|
||||
@@ -152,8 +148,7 @@ TEST(GpuHist, EvaluateSingleSplitFeatureSampling) {
|
||||
dh::ToSpan(feature_histogram)};
|
||||
|
||||
GPUHistEvaluator<GradientPair> evaluator(tparam, feature_min_values.size(), 0);
|
||||
DeviceSplitCandidate result =
|
||||
evaluator.EvaluateSingleSplit(input, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
DeviceSplitCandidate result = evaluator.EvaluateSingleSplit(input, 0).split;
|
||||
|
||||
EXPECT_EQ(result.findex, 1);
|
||||
EXPECT_EQ(result.fvalue, 11.0);
|
||||
@@ -191,8 +186,7 @@ TEST(GpuHist, EvaluateSingleSplitBreakTies) {
|
||||
dh::ToSpan(feature_histogram)};
|
||||
|
||||
GPUHistEvaluator<GradientPair> evaluator(tparam, feature_min_values.size(), 0);
|
||||
DeviceSplitCandidate result =
|
||||
evaluator.EvaluateSingleSplit(input, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
DeviceSplitCandidate result = evaluator.EvaluateSingleSplit(input, 0).split;
|
||||
|
||||
EXPECT_EQ(result.findex, 0);
|
||||
EXPECT_EQ(result.fvalue, 1.0);
|
||||
@@ -243,8 +237,8 @@ TEST(GpuHist, EvaluateSplits) {
|
||||
|
||||
GPUHistEvaluator<GradientPair> evaluator{
|
||||
tparam, static_cast<bst_feature_t>(feature_min_values.size()), 0};
|
||||
evaluator.EvaluateSplits(input_left, input_right, ObjInfo{ObjInfo::kRegression},
|
||||
evaluator.GetEvaluator(), dh::ToSpan(out_splits));
|
||||
evaluator.EvaluateSplits(input_left, input_right, evaluator.GetEvaluator(),
|
||||
dh::ToSpan(out_splits));
|
||||
|
||||
DeviceSplitCandidate result_left = out_splits[0];
|
||||
EXPECT_EQ(result_left.findex, 1);
|
||||
@@ -264,8 +258,7 @@ TEST_F(TestPartitionBasedSplit, GpuHist) {
|
||||
cuts_.cut_values_.SetDevice(0);
|
||||
cuts_.min_vals_.SetDevice(0);
|
||||
|
||||
ObjInfo task{ObjInfo::kRegression};
|
||||
evaluator.Reset(cuts_, dh::ToSpan(ft), task, info_.num_col_, param_, 0);
|
||||
evaluator.Reset(cuts_, dh::ToSpan(ft), info_.num_col_, param_, 0);
|
||||
|
||||
dh::device_vector<GradientPairPrecise> d_hist(hist_[0].size());
|
||||
auto node_hist = hist_[0];
|
||||
@@ -282,7 +275,7 @@ TEST_F(TestPartitionBasedSplit, GpuHist) {
|
||||
cuts_.cut_values_.ConstDeviceSpan(),
|
||||
cuts_.min_vals_.ConstDeviceSpan(),
|
||||
dh::ToSpan(d_hist)};
|
||||
auto split = evaluator.EvaluateSingleSplit(input, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
auto split = evaluator.EvaluateSingleSplit(input, 0).split;
|
||||
ASSERT_NEAR(split.loss_chg, best_score_, 1e-16);
|
||||
}
|
||||
} // namespace tree
|
||||
|
||||
@@ -24,8 +24,8 @@ template <typename GradientSumT> void TestEvaluateSplits() {
|
||||
|
||||
auto dmat = RandomDataGenerator(kRows, kCols, 0).Seed(3).GenerateDMatrix();
|
||||
|
||||
auto evaluator = HistEvaluator<GradientSumT, CPUExpandEntry>{
|
||||
param, dmat->Info(), n_threads, sampler, ObjInfo{ObjInfo::kRegression}};
|
||||
auto evaluator =
|
||||
HistEvaluator<GradientSumT, CPUExpandEntry>{param, dmat->Info(), n_threads, sampler};
|
||||
common::HistCollection<GradientSumT> hist;
|
||||
std::vector<GradientPair> row_gpairs = {
|
||||
{1.23f, 0.24f}, {0.24f, 0.25f}, {0.26f, 0.27f}, {2.27f, 0.28f},
|
||||
@@ -97,8 +97,7 @@ TEST(HistEvaluator, Apply) {
|
||||
param.UpdateAllowUnknown(Args{{"min_child_weight", "0"}, {"reg_lambda", "0.0"}});
|
||||
auto dmat = RandomDataGenerator(kNRows, kNCols, 0).Seed(3).GenerateDMatrix();
|
||||
auto sampler = std::make_shared<common::ColumnSampler>();
|
||||
auto evaluator_ = HistEvaluator<float, CPUExpandEntry>{param, dmat->Info(), 4, sampler,
|
||||
ObjInfo{ObjInfo::kRegression}};
|
||||
auto evaluator_ = HistEvaluator<float, CPUExpandEntry>{param, dmat->Info(), 4, sampler};
|
||||
|
||||
CPUExpandEntry entry{0, 0, 10.0f};
|
||||
entry.split.left_sum = GradStats{0.4, 0.6f};
|
||||
@@ -125,7 +124,7 @@ TEST_F(TestPartitionBasedSplit, CPUHist) {
|
||||
std::vector<FeatureType> ft{FeatureType::kCategorical};
|
||||
auto sampler = std::make_shared<common::ColumnSampler>();
|
||||
HistEvaluator<double, CPUExpandEntry> evaluator{param_, info_, common::OmpGetNumThreads(0),
|
||||
sampler, ObjInfo{ObjInfo::kRegression}};
|
||||
sampler};
|
||||
evaluator.InitRoot(GradStats{total_gpair_});
|
||||
RegTree tree;
|
||||
std::vector<CPUExpandEntry> entries(1);
|
||||
@@ -156,8 +155,8 @@ auto CompareOneHotAndPartition(bool onehot) {
|
||||
|
||||
int32_t n_threads = 16;
|
||||
auto sampler = std::make_shared<common::ColumnSampler>();
|
||||
auto evaluator = HistEvaluator<GradientSumT, CPUExpandEntry>{
|
||||
param, dmat->Info(), n_threads, sampler, ObjInfo{ObjInfo::kRegression}};
|
||||
auto evaluator =
|
||||
HistEvaluator<GradientSumT, CPUExpandEntry>{param, dmat->Info(), n_threads, sampler};
|
||||
std::vector<CPUExpandEntry> entries(1);
|
||||
|
||||
for (auto const &gmat : dmat->GetBatches<GHistIndexMatrix>({32, param.sparse_threshold})) {
|
||||
|
||||
@@ -262,7 +262,7 @@ TEST(GpuHist, EvaluateRootSplit) {
|
||||
info.num_col_ = kNCols;
|
||||
|
||||
DeviceSplitCandidate res =
|
||||
maker.EvaluateRootSplit({6.4f, 12.8f}, 0, ObjInfo{ObjInfo::kRegression}).split;
|
||||
maker.EvaluateRootSplit({6.4f, 12.8f}, 0).split;
|
||||
|
||||
ASSERT_EQ(res.findex, 7);
|
||||
ASSERT_NEAR(res.fvalue, 0.26, xgboost::kRtEps);
|
||||
@@ -300,11 +300,11 @@ void TestHistogramIndexImpl() {
|
||||
const auto &maker = hist_maker.maker;
|
||||
auto grad = GenerateRandomGradients(kNRows);
|
||||
grad.SetDevice(0);
|
||||
maker->Reset(&grad, hist_maker_dmat.get(), kNCols, ObjInfo{ObjInfo::kRegression});
|
||||
maker->Reset(&grad, hist_maker_dmat.get(), kNCols);
|
||||
std::vector<common::CompressedByteT> h_gidx_buffer(maker->page->gidx_buffer.HostVector());
|
||||
|
||||
const auto &maker_ext = hist_maker_ext.maker;
|
||||
maker_ext->Reset(&grad, hist_maker_ext_dmat.get(), kNCols, ObjInfo{ObjInfo::kRegression});
|
||||
maker_ext->Reset(&grad, hist_maker_ext_dmat.get(), kNCols);
|
||||
std::vector<common::CompressedByteT> h_gidx_buffer_ext(maker_ext->page->gidx_buffer.HostVector());
|
||||
|
||||
ASSERT_EQ(maker->page->Cuts().TotalBins(), maker_ext->page->Cuts().TotalBins());
|
||||
|
||||
@@ -61,6 +61,9 @@ class TestGPUUpdaters:
|
||||
def test_categorical(self, rows, cols, rounds, cats):
|
||||
self.cputest.run_categorical_basic(rows, cols, rounds, cats, "gpu_hist")
|
||||
|
||||
def test_max_cat(self) -> None:
|
||||
self.cputest.run_max_cat("gpu_hist")
|
||||
|
||||
def test_categorical_32_cat(self):
|
||||
'''32 hits the bound of integer bitset, so special test'''
|
||||
rows = 1000
|
||||
|
||||
@@ -1,3 +1,5 @@
|
||||
from random import choice
|
||||
from string import ascii_lowercase
|
||||
import testing as tm
|
||||
import pytest
|
||||
import xgboost as xgb
|
||||
@@ -167,6 +169,30 @@ class TestTreeMethod:
|
||||
|
||||
def test_invalid_category(self) -> None:
|
||||
self.run_invalid_category("approx")
|
||||
self.run_invalid_category("hist")
|
||||
|
||||
def run_max_cat(self, tree_method: str) -> None:
|
||||
"""Test data with size smaller than number of categories."""
|
||||
import pandas as pd
|
||||
n_cat = 100
|
||||
n = 5
|
||||
X = pd.Series(
|
||||
["".join(choice(ascii_lowercase) for i in range(3)) for i in range(n_cat)],
|
||||
dtype="category",
|
||||
)[:n].to_frame()
|
||||
|
||||
reg = xgb.XGBRegressor(
|
||||
enable_categorical=True,
|
||||
tree_method=tree_method,
|
||||
n_estimators=10,
|
||||
)
|
||||
y = pd.Series(range(n))
|
||||
reg.fit(X=X, y=y, eval_set=[(X, y)])
|
||||
assert tm.non_increasing(reg.evals_result()["validation_0"]["rmse"])
|
||||
|
||||
@pytest.mark.parametrize("tree_method", ["hist", "approx"])
|
||||
def test_max_cat(self, tree_method) -> None:
|
||||
self.run_max_cat(tree_method)
|
||||
|
||||
def run_categorical_basic(self, rows, cols, rounds, cats, tree_method):
|
||||
onehot, label = tm.make_categorical(rows, cols, cats, True)
|
||||
|
||||
Reference in New Issue
Block a user