1613 Commits

Author SHA1 Message Date
Jiaming Yuan
0808e50ae8
Sync stream in ellpack format. (#10374) 2024-06-04 12:58:26 +08:00
Jiaming Yuan
4f48647932
Fix typo. (#10353) 2024-06-02 02:07:55 +08:00
Jiaming Yuan
d2d01d977a
Remove unnecessary fetch operations in external memory. (#10342) 2024-05-31 13:16:40 +08:00
Jiaming Yuan
e6eefea5e2
[coll] Move the rabit poll helper. (#10349) 2024-05-31 08:02:21 +08:00
Jiaming Yuan
2de67f0050
[coll] Prevent race during error check. (#10319) 2024-05-28 15:43:16 -07:00
Philip Hyunsu Cho
7ae5c972f9
[CI] Upgrade github workflows to use latest Conda setup action (#10320)
Co-authored-by: Christian Clauss <cclauss@me.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-05-28 10:23:07 -07:00
Jiaming Yuan
5627af6b21
[coll] Increase timeout limit. (#10332) 2024-05-28 10:20:49 +08:00
Jiaming Yuan
966dc81788
[coll] Keep the tracker alive during initialization error. (#10306) 2024-05-23 11:13:59 +08:00
Jiaming Yuan
d5fcbee44b
Add timeout for distributed tests. (#10315) 2024-05-23 11:11:49 +08:00
Jiaming Yuan
a5a58102e5
Revamp the rabit implementation. (#10112)
This PR replaces the original RABIT implementation with a new one, which has already been partially merged into XGBoost. The new one features:
- Federated learning for both CPU and GPU.
- NCCL.
- More data types.
- A unified interface for all the underlying implementations.
- Improved timeout handling for both tracker and workers.
- Exhausted tests with metrics (fixed a couple of bugs along the way).
- A reusable tracker for Python and JVM packages.
2024-05-20 11:56:23 +08:00
Jiaming Yuan
835e59e538
Use a thread pool for external memory. (#10288) 2024-05-16 19:32:12 +08:00
Jiaming Yuan
5de57435c7
Be more lenient on floating point error for AUC. (#10264) 2024-05-11 08:48:11 +08:00
Jiaming Yuan
5e64276a9b
Update nvtx. (#10227) 2024-04-29 06:33:46 +08:00
Jiaming Yuan
3fbb221fec
[coll] Implement shutdown for tracker and comm. (#10208)
- Force shutdown the tracker.
- Implement shutdown notice for error handling thread in comm.
2024-04-20 04:08:17 +08:00
Jiaming Yuan
3f64b4fde3
[coll] Add global functions. (#10203) 2024-04-19 03:17:23 +08:00
Jiaming Yuan
4b10200456
[coll] Improve event loop. (#10199)
- Add a test for blocking calls.
- Do not require the queue to be empty after waking up; this frees up the thread to answer blocking calls.
- Handle EOF in read.
- Improve the error message in the result. Allow concatenation of multiple results.
2024-04-18 03:29:52 +08:00
Jiaming Yuan
1022909bbe
Fix global config for external memory. (#10173)
Pass the thread-local configuration between threads.
2024-04-11 01:29:28 +08:00
Jiaming Yuan
f0a138f33a
Fix pyspark with verbosity=3. (#10172) 2024-04-09 23:18:56 +08:00
Jiaming Yuan
8bad677c2f
Update collective implementation. (#10152)
* Update collective implementation.

- Cleanup resource during `Finalize` to avoid handling threads in destructor.
- Calculate the size for allgather automatically.
- Use simple allgather for small (smaller than the number of worker) allreduce.
2024-03-30 18:57:31 +08:00
Jiaming Yuan
230010d9a0
Cleanup set info. (#10139)
- Use the array interface internally.
- Deprecate `XGDMatrixSetDenseInfo`.
- Deprecate `XGDMatrixSetUIntInfo`.
- Move the handling of `DataType` into the deprecated C function.

---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2024-03-26 23:26:24 +08:00
Jiaming Yuan
ca4801f81d
Work with IPv6 in the new tracker. (#10125) 2024-03-20 05:19:23 +08:00
Jiaming Yuan
53fc17578f
Use std::uint64_t for row index. (#10120)
- Use std::uint64_t instead of size_t to avoid implementation-defined type.
- Rename to bst_idx_t, to account for other types of indexing.
- Small cleanup to the base header.
2024-03-15 18:43:49 +08:00
Jiaming Yuan
56b1868278
Fix compilation with the latest ctk. (#10123) 2024-03-15 08:04:41 +08:00
Jiaming Yuan
1450aebb74
Fix pairwise objective with NDCG metric along with custom gain. (#10100)
* Fix pairwise objective with NDCG metric.

- Allow setting `ndcg_exp_gain` for `rank:pairwise`.

This is useful when using pairwise for objective but ndcg for metric.
2024-03-11 14:54:10 +08:00
Jiaming Yuan
2c13f90384
Support graphviz plot for multi-target tree. (#10093) 2024-03-09 05:35:25 +08:00
Jiaming Yuan
e14c3b9325
Optional normalization for learning to rank. (#10094) 2024-03-08 12:41:21 +08:00
Jiaming Yuan
3941b31ade
Disable column sample by node for the exact tree method. (#10083) 2024-03-01 14:16:10 +08:00
Jiaming Yuan
8189126d51
Add CUDA iterator to tensor view. (#10074) 2024-03-01 14:15:31 +08:00
Jiaming Yuan
5ac233280e
Require context in aggregators. (#10075) 2024-02-28 03:12:42 +08:00
Jiaming Yuan
0ce4372bd4
Use UBJSON for serializing splits for vertical data split. (#10059) 2024-02-25 00:18:23 +08:00
Jiaming Yuan
2e4ea5ecc0
Support f64 for ubjson. (#10055) 2024-02-21 02:18:42 +08:00
Jiaming Yuan
d37b83e8d9
Fix UBJSON with boolean value. (#10054) 2024-02-20 22:13:51 +08:00
david-cortes
6e3c899ba7
[R] Don't cap global number of threads for serialization (#10028) 2024-02-20 11:13:00 +08:00
Louis Desreumaux
edf501d227
Implement contribution prediction with QuantileDMatrix (#10043)
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-02-19 21:03:29 +08:00
david-cortes
a730c7e67e
[R] allow using seed with regular RNG (#10029) 2024-02-04 16:22:22 +08:00
Philip Hyunsu Cho
4dfbe2a893
[CI] Test building for 32-bit arch (#10021)
* [CI] Test building for 32-bit arch

* Update CMakeLists.txt

* Fix yaml

* Use Debian container

* Remove -Werror for 32-bit

* Revert "Remove -Werror for 32-bit"

This reverts commit c652bc6a037361bcceaf56fb01863210b462793d.

* Don't error for overloaded-virtual warning

* Ignore some warnings from dmlc-core

* Fix compiler warnings

* Fix formatting

* Apply suggestions from code review

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>

* Add more cast

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-01-31 13:20:51 -08:00
Jiaming Yuan
a76d6c6131
Fix cpp deprecation. (#10010) 2024-01-26 02:13:40 +08:00
Philip Hyunsu Cho
c8f5d190c6
[CI] Stop Windows pipeline upon a failing pytest (#10003) 2024-01-24 22:54:21 -08:00
Jiaming Yuan
cacb4b1fdd
Fix gain calculation in multi-target tree. (#9978) 2024-01-17 13:18:44 +08:00
Jiaming Yuan
85d09245f6
Fix error handling in the event loop. (#9990) 2024-01-17 05:35:35 +08:00
Jiaming Yuan
2f57bbde3c
Additional tests for attributes and model booosted rounds. (#9962) 2024-01-09 09:54:39 +08:00
Jiaming Yuan
38dd91f491
Save model in ubj as the default. (#9947) 2024-01-05 17:53:36 +08:00
Jiaming Yuan
c03a4d5088
Check support status for categorical features. (#9946) 2024-01-04 16:51:33 +08:00
Jiaming Yuan
621348abb3
Fix multi-output with alternating strategies. (#9933)
---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2024-01-04 16:41:13 +08:00
david-cortes
3c004a4145
[R] Add missing DMatrix functions (#9929)
* `XGDMatrixGetQuantileCut`
* `XGDMatrixNumNonMissing`
* `XGDMatrixGetDataAsCSR`

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-01-03 17:29:21 +08:00
Jiaming Yuan
a7226c0222
Fix feature names with special characters. (#9923) 2023-12-28 22:45:13 +08:00
Dmitry Razdoburdin
43897b8296
Sycl implementation for objective functions (#9846)
---------

Co-authored-by: Dmitry Razdoburdin <>
2023-12-12 14:41:50 +08:00
Jiaming Yuan
faf0f2df10
Support dataframe data format in native XGBoost. (#9828)
- Implement a columnar adapter.
- Refactor Python pandas handling code to avoid converting into a single numpy array.
- Add support in R for transforming columns.
- Support R data.frame and factor type.
2023-12-12 09:56:31 +08:00
Jiaming Yuan
42de9206fc
Support multi-target, fit intercept for hinge. (#9850) 2023-12-08 05:50:41 +08:00
Jiaming Yuan
39c637ee19
Use array interface in Python prediction return. (#9855) 2023-12-08 03:42:14 +08:00