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Author SHA1 Message Date
Jiaming Yuan
f0c63902ff
Use default allocator in sketching. (#6182) 2020-09-30 14:55:59 +08:00
Jiaming Yuan
444131a2e6
Add categorical data support to GPU Hist. (#6164) 2020-09-29 11:27:25 +08:00
Jiaming Yuan
798af22ff4
Add categorical data support to GPU predictor. (#6165) 2020-09-29 11:25:34 +08:00
Jiaming Yuan
7622b8cdb8
Enable categorical data support on Python DMatrix. (#6166) 
* Only pandas is recognized.
 2020-09-29 11:22:56 +08:00
Jiaming Yuan
52c0b3f100
Fix error message. (#6176) 2020-09-29 11:18:25 +08:00
Rory Mitchell
dda9e1e487
Update GPUTreeshap (#6163) 
* Reduce shap test duration

* Test interoperability with shap package

* Add feature interactions

* Update GPUTreeShap
 2020-09-28 09:43:47 +13:00
Jiaming Yuan
434a3f35a3
Add TAGS to gitignore. [skip ci] (#6175) 2020-09-27 21:27:40 +08:00
Jiaming Yuan
07355599c2
Option for generating device debug info. (#6168) 
* Supply `-G;-src-in-ptx` when `USE_DEVICE_DEBUG` is set and debug mode is selected.
* Refactor CMake script to gather all CUDA configuration.
* Use CMAKE_CUDA_ARCHITECTURES.  Close #6029.
* Add compute 80.  Close #5999
 2020-09-27 03:26:56 +08:00
Kyle Nicholson
e6a238c020
Update base margin dask (#6155) 
* Add `base-margin`
* Add `output_margin` to regressor.

Co-authored-by: fis <jm.yuan@outlook.com>
 2020-09-26 21:30:52 +08:00
Alexander Gugel
03b8fdec74
Add DMatrix usage examples to c-api-demo (#5854) 
* Add DMatrix usage examples to c-api-demo

* Add XGDMatrixCreateFromCSREx example

* Add XGDMatrixCreateFromCSCEx example
 2020-09-26 02:10:12 -07:00
Philip Hyunsu Cho
2c4dedb7a0
[CI] Test C API demo (#6159) 
* Fix CMake install config to use dependencies

* [CI] Test C API demo

* Explicitly cast num_feature, to avoid warning in Linux
 2020-09-25 14:49:01 -07:00
Philip Hyunsu Cho
bd2b1eabd0
Add back support for scipy.sparse.coo_matrix (#6162) 2020-09-25 00:49:49 -07:00
Philip Hyunsu Cho
72ef553550
Fall back to CUB allocator if RMM memory pool is not set up (#6150) 
* Fall back to CUB allocator if RMM memory pool is not set up

* Fix build

* Prevent memory leak

* Add note about lack of memory initialisation

* Add check for other fast allocators

* Set use_cub_allocator_ to true when RMM is not enabled

* Fix clang-tidy

* Do not demangle symbol; add check to ensure Linux+Clang/GCC combo
 2020-09-24 11:04:50 -07:00
Zeno Gantner
5b05f88ba9
Cosmetic fixes in faq.rst (#6161) 2020-09-24 21:05:10 +08:00
Jiaming Yuan
14afdb4d92
Support categorical data in ellpack. (#6140) 2020-09-24 19:28:57 +08:00
Jiaming Yuan
78d72ef936
Add DaskDeviceQuantileDMatrix demo. (#6156) 2020-09-24 14:08:28 +08:00
Philip Hyunsu Cho
678ea40b24
[CI] Upgrade cuDF and RMM to 0.16 nightlies; upgrade to Ubuntu 18.04 (#6157) 
* [CI] Upgrade cuDF and RMM to 0.16 nightlies

* Use Ubuntu 18.04 in RMM test, since RMM needs GCC 7+
 2020-09-23 19:48:44 -07:00
James Lamb
c686bc0461
[R] remove warning in configure.ac (fixes #6151) (#6152) 
* [R] remove warning in configure.ac (fixes #6151)

* update configure
 2020-09-22 22:47:38 -07:00
Jiaming Yuan
e033caa3ba
Remove linking RMM library. (#6146) 
* Remove linking RMM library.

* RMM is now header only.

* Remove remaining reference.
 2020-09-22 16:59:33 -07:00
Jiaming Yuan
452ac8ea62
Time GPU tests on CI. (#6141) 2020-09-22 14:25:10 +08:00
Jiaming Yuan
33d80ffad0
[dask] Support more meta data on functional interface. (#6132) 
* Add base_margin, label_(lower|upper)_bound.
* Test survival training with dask.
 2020-09-21 16:56:37 +08:00
Jiaming Yuan
7065779afa
Improve JSON format for categorical features. (#6128) 
* Gather categories for all nodes.
 2020-09-21 15:35:05 +08:00
Jiaming Yuan
210c131ce7
Support categorical data in GPU sketching. (#6137) 2020-09-21 13:53:06 +08:00
Nan Zhu
c932fb50a1
[jvm-packages]add xgboost4j-gpu/xgboost4j-spark-gpu module to facilitate release (#6136) 
* add xgboost4j-gpu/xgboost4j-spark-gpu module to facilitate release

* Update pom.xml
 2020-09-20 09:20:38 -07:00
Jiaming Yuan
a069a21e03
Implement intrusive ptr (#6129) 
* Use intrusive ptr for JSON.
 2020-09-20 20:07:16 +08:00
Jiaming Yuan
e319b63f9e
Merge extract cuts into QuantileContainer. (#6125) 
* Use pruning for initial summary construction.
 2020-09-18 16:36:39 +08:00
Jiaming Yuan
cc82ca167a
[dask] Refactor meta data handling. (#6130) 2020-09-18 13:26:40 +08:00
Jiaming Yuan
5384ed85c8
Use caching allocator from RMM, when RMM is enabled (#6131) 2020-09-17 21:51:49 -07:00
neko
6bc9b9dc4f
Fix doc for CMake requirement. (#6123) 2020-09-16 17:59:43 +08:00
Philip Hyunsu Cho
9e955fb9b0
[R] Check warnings explicitly for model compatibility tests (#6114) 
* [R] Check warnings explicitly for model compatibility tests

* Address reviewer's feedback
 2020-09-15 10:49:48 -07:00
Philip Hyunsu Cho
33577ef5d3
Add MAPE metric (#6119) 2020-09-14 18:45:27 -07:00
Rory Mitchell
47350f6acb
Allow kwargs in dask predict (#6117) 2020-09-15 13:04:03 +12:00
Jiaming Yuan
b5f52f0b1b
Validate weights are positive values. (#6115) 2020-09-15 09:03:55 +08:00
Jiaming Yuan
c6f2b8c841
Upgrade gputreeshap. (#6099) 
* Upgrade gputreeshap.

Co-authored-by: Rory Mitchell <r.a.mitchell.nz@gmail.com>
 2020-09-15 12:57:22 +12:00
Vitalie Spinu
1453bee3e7
[R] Remove stringi dependency (#6109) 
* [R] Fix empty empty tests and a test warnings

* [R] Remove stringi dependency (fix #5905)

* Fix R lint check

* [R] Fix automatic conversion to factor in R < 4.0.0 in xgb.model.dt.tree

* Add `R` Makefile variable

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-09-12 13:18:08 -07:00
Jiaming Yuan
07945290a2
Remove unused RABIT targets. (#6110) 
* Remove rabit mock.
* Remove rabit base.
 2020-09-11 14:09:44 +08:00
Jiaming Yuan
c92d751ad1
Enable building rabit on Windows (#6105) 2020-09-11 11:54:46 +08:00
Jiaming Yuan
08bdb2efc8
Fix dask doc. [skip ci] (#6108) 2020-09-11 10:56:12 +08:00
Bobby Wang
00b0ad1293
[Doc] add doc for kill_spark_context_on_worker_failure parameter (#6097) 
* [Doc] add doc for kill_spark_context_on_worker_failure parameter

* resolve comments
 2020-09-09 21:28:44 -07:00
Philip Hyunsu Cho
d0ccb13d09
Work around a compiler bug in MacOS AppleClang 11 (#6103) 
* Workaround a compiler bug in MacOS AppleClang

* [CI] Run C++ test with MacOS Catalina + AppleClang 11.0.3

* [CI] Migrate cmake_test on MacOS from Travis CI to GitHub Actions

* Install OpenMP runtime

* [CI] Use CMake to locate lz4 lib
 2020-09-09 21:21:55 -07:00
Philip Hyunsu Cho
9338582d79
[CI] Fix CTest by running it in a correct directory (#6104) 
* [CI] Fix CTest by running it in a correct directory

* [CI] Do not run dmlc-core unit tests with sanitizer
 2020-09-09 10:31:09 -07:00
Jiaming Yuan
3dcd85fab5
Refactor rabit tests (#6096) 
* Merge rabit tests into XGBoost.
* Run them On CI.
* Simplification for CMake scripts.
 2020-09-09 12:30:29 +08:00
Jiaming Yuan
318bffaa10
Fix custom obj link. [skip ci] (#6100) 2020-09-09 10:55:38 +08:00
Jiaming Yuan
b0001a6e29
Correct style warnings from clang-tidy for rabit. (#6095) 2020-09-08 12:13:58 +08:00
Hristo Iliev
da61d9460b
[jvm-packages] Add getNumFeature method (#6075) 
* Add getNumFeature to the Java API
* Add getNumFeature to the Scala API
* Add unit tests for getNumFeature

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-09-07 20:57:46 -07:00
Jiaming Yuan
93e9af43bb
Unify set index data. (#6062) 2020-09-08 11:38:41 +08:00
Jiaming Yuan
e5d40b39cd
[Breaking] Don't save leaf child count in JSON. (#6094) 
The field is deprecated and not used anywhere in XGBoost.
 2020-09-08 11:11:13 +08:00
Jiaming Yuan
5994f3b14c
Don't link imported target. (#6093) 2020-09-07 02:51:09 -07:00
Philip Hyunsu Cho
974ba12f38
Fix CMake build with BUILD_STATIC_LIB option (#6090) 
* Fix CMake build with BUILD_STATIC_LIB option

* Disable BUILD_STATIC_LIB option when R/JVM pkg is enabled

* Add objxgboost to install target only when BUILD_STATIC_LIB=ON
 2020-09-07 02:38:29 -07:00
Daniel Steinberg
68c55a37d9
Add cache name back to external_memory.py files. (#6088) 2020-09-06 16:01:09 +08:00