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300 Commits

Author SHA1 Message Date
david-cortes
12c6b7ceea
[R] Remove demos (#10750) 2024-08-27 04:16:36 +08:00
Jiaming Yuan
06c4246ff1
[CI] Workaround mypy errors. (#10754) 2024-08-27 02:54:11 +08:00
Philip Hyunsu Cho
cd83fe6033
[breaking][CI] Use CTK 12.4 (#10697) 2024-08-21 19:59:34 -07:00
Jiaming Yuan
cb54374550
Update clang-tidy. (#10730) 
- Install cmake using pip.
- Fix compile command generation.
- Clean up the tidy script and remove the need to load the yaml file.
- Fix modernized type traits.
- Fix span class. Polymorphism support is dropped
 2024-08-22 04:12:18 +08:00
James Lamb
18b28d9315
[R] prefer startsWith to substr() or regular expressions (#10687) 2024-08-09 21:18:46 +08:00
James Lamb
fb9201abae
[CI] use key=value form for Dockerfile ENV statements (#10685) 2024-08-09 21:12:50 +08:00
Jiaming Yuan
3d8107adb8
Support doc link for the sklearn module. (#10287) 2024-08-06 02:35:32 +08:00
Philip Hyunsu Cho
778751a1bb
Update the release script to download xgboost-cpu (#10657) 
* Update the release script to download xgboost-cpu

* Exclude mypy 1.11.1; un-cap pylint

* Exclude mypy 1.11.0 too
 2024-07-31 14:43:10 -07:00
Jiaming Yuan
fb77ed7603
[CI] Fix Python wheel workflow. (#10649) 
* [CI] Fix Python wheel workflow.

* Use Python 3.10 for building wheels

---------

Co-authored-by: Hyunsu Cho <phcho@nvidia.com>
 2024-07-30 10:13:47 -07:00
Jiaming Yuan
827d0e8edb
[breaking] Bump Python requirement to 3.10. (#10434) 
- Bump the Python requirement.
- Fix type hints.
- Use loky to avoid deadlock.
- Workaround cupy-numpy compatibility issue on Windows caused by the `safe` casting rule.
- Simplify the repartitioning logic to avoid dask errors.
 2024-07-30 17:31:06 +08:00
Jiaming Yuan
cb62f9e73b
[EM] Prevent init with CUDA malloc resource. (#10606) 2024-07-21 05:08:29 +08:00
Jiaming Yuan
7ab93f3ce3
[CI] Fix test environment. (#10609) 
* [CI] Fix test environment.

* Remove shell.

* Remove.

* Update Dockerfile.i386
 2024-07-18 10:04:17 -07:00
Dmitry Razdoburdin
ce97de2a7c
replace channel for sycl dependencies (#10576) 
Co-authored-by: Dmitry Razdoburdin <>
 2024-07-12 18:28:54 +08:00
Jiaming Yuan
00264eb72b
[EM] Basic distributed test for external memory. (#10492) 2024-07-06 01:15:20 +08:00
Jiaming Yuan
a39fef2c67
[fed] Fixes for the encrypted GRPC backend. (#10503) 2024-07-02 15:15:12 +08:00
Philip Hyunsu Cho
4b88dfff24
[CI] Temporarily pin pylint to 3.2.3 (#10494) 
* [CI] Temporarily pin pylint to 3.2.3

* Add quotes

* Correct env
 2024-06-26 14:08:49 -07:00
Philip Hyunsu Cho
08658b124d
[CI] Add CI pipeline to build libxgboost4j.so targeting Linux ARM64 (#10487) 2024-06-26 01:43:15 -07:00
Philip Hyunsu Cho
d4dee25eb3
[CI] Set up pipeline to build manylinux2014 wheels (#10478) 2024-06-24 12:25:26 -07:00
Philip Hyunsu Cho
8689f0b562
[CI] Stop vendoring libomp.dylib in MacOS Python wheels (#10440) 2024-06-18 19:17:02 -07:00
Philip Hyunsu Cho
bc3747bdce
[CI] Migrate to rockylinux8 / manylinux_2_28_x86_64 (#10399) 
* [CI] Migrate to rockylinux8 / manylinux_2_28_x86_64

* Scrub all references to CentOS 7

* Fix

* Remove use of yum

* Use gcc-10 in cpu

* Temporarily disable -Werror

* Use GCC 9 for now

* Roll back gRPC

* Scrub all references to manylinux2014_x86_64

* Revise rename_whl.py to handle no-op rename

* Change JDK_VERSION back to 8

* Reviewer's comment

* Use GCC 10

* Use Spark 3.5.1, same as in pom.xml

* Fix JAR install
 2024-06-17 12:07:49 -07:00
Richard (Rick) Zamora
dc14f98f40
Avoid default tokenization in Dask (#10398) 
---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-06-14 19:44:54 +08:00
Philip Hyunsu Cho
4057f861c1
[CI] Add nightly CI job to test against dev version of deps (#10351) 
* [CI] Add nightly CI job to test against dev version of deps

* Update build-containers.sh

* Add build step

* Wait for build artifact

* Try pinning dask

* Address reviewers' comments

* Fix unbound variable error

* Specify dev version exactly

* Pin dask=2024.1.1
 2024-06-03 19:28:55 -07:00
Jiaming Yuan
e6eefea5e2
[coll] Move the rabit poll helper. (#10349) 2024-05-31 08:02:21 +08:00
Jiaming Yuan
7354955cbb
Test federated plugin using GitHub action. (#10336) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-05-29 02:28:14 +08:00
Philip Hyunsu Cho
7ae5c972f9
[CI] Upgrade github workflows to use latest Conda setup action (#10320) 
Co-authored-by: Christian Clauss <cclauss@me.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-05-28 10:23:07 -07:00
Bobby Wang
9def441e9a
[CI] add script to generate meta info and upload to s3 (#10295) 
* [CI] add script to generate meta info and upload to s3

* Write Python script to generate meta.json

* Update other pipelines

* Add wheel_name field

* Add description

---------

Co-authored-by: Hyunsu Cho <phcho@nvidia.com>
 2024-05-24 10:03:28 -07:00
Jiaming Yuan
a5a58102e5
Revamp the rabit implementation. (#10112) 
This PR replaces the original RABIT implementation with a new one, which has already been partially merged into XGBoost. The new one features:
- Federated learning for both CPU and GPU.
- NCCL.
- More data types.
- A unified interface for all the underlying implementations.
- Improved timeout handling for both tracker and workers.
- Exhausted tests with metrics (fixed a couple of bugs along the way).
- A reusable tracker for Python and JVM packages.
 2024-05-20 11:56:23 +08:00
Philip Hyunsu Cho
edb945d59b
[CI] Use native arm64 worker in GHAction to build M1 wheel (#10225) 
* [CI] Use native arm64 worker in GHAction to build M1 wheel

* Set up Conda

* Use mamba

* debug

* fix

* fix

* fix

* fix

* fix

* Temporarily disable other tests

* Fix prefix

* Use micromamba

* Use conda-incubator/setup-miniconda

* Use mambaforge

* Fix

* Fix prefix

* Don't use deprecated set-output

* Add verbose output from build

* verbose

* Specify arch

* Bump setup-miniconda to v3

* Use Python 3.9

* Restore deleted files

* WAR.

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-04-26 10:16:55 -07:00
Dmitry Razdoburdin
58513dc288
[SYCL] Add sampling initialization (#10216) 
---------

Co-authored-by: Dmitry Razdoburdin <>
 2024-04-25 04:35:52 +08:00
Jiaming Yuan
59d7b8dc72
[doc] Add typing to dask demos. (#10207) 2024-04-23 00:57:05 +08:00
Philip Hyunsu Cho
32be4669fb
[jvm-packages] Ombinus patch to update all minor dependencies (#10188) 
* Fold in #10184

* Fold in #10176

* Fold in #10168

* Fold in #10165

* Fold in #10164

* Fold in #10155

* Fold in #10062

* Fold in #9984

* Fold in #9843

* Upgrade to Maven 3.6.3
 2024-04-16 19:43:04 -07:00
github-actions[bot]
2925cebdca
[CI] Use latest RAPIDS; Pandas 2.0 compatibility fix (#10175) 
* [CI] Update RAPIDS to latest stable

* [CI] Use rapidsai stable channel; fix syntax errors in Dockerfile.gpu

* Don't combine astype() with loc()

* Work around https://github.com/dmlc/xgboost/issues/10181

* Fix formatting

* Fix test

---------

Co-authored-by: hcho3 <hcho3@users.noreply.github.com>
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-04-15 13:38:53 -07:00
Jiaming Yuan
ca4801f81d
Work with IPv6 in the new tracker. (#10125) 2024-03-20 05:19:23 +08:00
Philip Hyunsu Cho
23a37dcaf9
[CI] Test R package with CMake (#10087) 
* [CI] Test R package with CMake

* Fix

* Fix

* Update test_r_package.py

* Fix CMake flag for R package

* Install system deps

* Fix

* Use sudo
 2024-03-04 12:32:44 -08:00
Jiaming Yuan
8ea705e4d5
Support sample weight in sklearn custom objective. (#10050) 2024-02-21 00:43:14 +08:00
Philip Hyunsu Cho
4dfbe2a893
[CI] Test building for 32-bit arch (#10021) 
* [CI] Test building for 32-bit arch

* Update CMakeLists.txt

* Fix yaml

* Use Debian container

* Remove -Werror for 32-bit

* Revert "Remove -Werror for 32-bit"

This reverts commit c652bc6a037361bcceaf56fb01863210b462793d.

* Don't error for overloaded-virtual warning

* Ignore some warnings from dmlc-core

* Fix compiler warnings

* Fix formatting

* Apply suggestions from code review

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>

* Add more cast

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
 2024-01-31 13:20:51 -08:00
Jiaming Yuan
54b71c8fba
Fix with black 24.1.1. (#10014) 2024-01-30 17:24:11 +08:00
Jiaming Yuan
d12cc1090a
Refactor tests for training continuation. (#9997) 2024-01-24 16:07:19 +08:00
Philip Hyunsu Cho
2c8fa8b8b9
[CI] Skip MSVC when building R package (#9995) 
* [CI] Skip MSVC when building R package

* [CI] Stop building binary tarball for Windows

* Remove unused script
 2024-01-18 08:09:53 -08:00
Jiaming Yuan
0798e36d73
[breaking] Remove deprecated parameters in the skl interface. (#9986) 2024-01-15 20:40:05 +08:00
Philip Hyunsu Cho
1168a68872
[jvm-packages] Update release scripts (#9983) 
* [jvm-packages] Add Scala version suffix to xgboost-jvm package (#9776)

* Update JVM script (#9714)

* Revamp pom.xml

* Update instructions in prepare_jvm_release.py

* Fix formatting

* [jvm-packages] Fix POM for xgboost-jvm metapackage (#9893)

* [jvm-packages] Fix POM for xgboost-jvm metapackage

* Add script for updating the Scala version

* Update change_scala_version.py to also change scala.version property (#9897)

* Remove 'release-cpu-only' profile

* Remove scala-2.13 profile; enable gpu package for Scala 2.13
 2024-01-12 10:37:55 -08:00
Jiaming Yuan
b3eb5d0945
Use UBJ in Python checkpoint. (#9958) 2024-01-09 03:22:15 +08:00
Jiaming Yuan
38dd91f491
Save model in ubj as the default. (#9947) 2024-01-05 17:53:36 +08:00
Jiaming Yuan
621348abb3
Fix multi-output with alternating strategies. (#9933) 
---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2024-01-04 16:41:13 +08:00
Jiaming Yuan
9f73127a23
Cleanup Python GPU tests. (#9934) 
* Cleanup Python GPU tests.

- Remove the use of `gpu_hist` and `gpu_id` in cudf/cupy tests.
- Move base margin test into the testing directory.
 2024-01-04 13:15:18 +08:00
Philip Hyunsu Cho
ef8bdaa047
[CI] Update machine images (#9932) 2023-12-29 11:15:38 -08:00
Jiaming Yuan
4bc1f3a388
[R] Bump requirement to 4.3.0. (#9847) 2023-12-07 00:12:45 +08:00
Dmitry Razdoburdin
381f1d3dc9
Add support inference on SYCL devices (#9800) 
---------

Co-authored-by: Dmitry Razdoburdin <>
Co-authored-by: Nikolay Petrov <nikolay.a.petrov@intel.com>
Co-authored-by: Alexandra <alexandra.epanchinzeva@intel.com>
 2023-12-04 16:15:57 +08:00
Jiaming Yuan
e78b46046e
[CI] Update R version on Linux. (#9835) 2023-12-02 11:03:17 +08:00
Jiaming Yuan
0715ab3c10
Use dlopen to load NCCL. (#9796) 
This PR adds optional support for loading nccl with `dlopen` as an alternative of compile time linking. This is to address the size bloat issue with the PyPI binary release.
- Add CMake option to load `nccl` at runtime.
- Add an NCCL stub.

After this, `nccl` will be fetched from PyPI when using pip to install XGBoost, either by a user or by `pyproject.toml`. Others who want to link the nccl at compile time can continue to do so without any change.

At the moment, this is Linux only since we only support MNMG on Linux.
 2023-11-22 19:27:31 +08:00