34 Commits

Author SHA1 Message Date
david-cortes
bc9ea62ec0
[R] Make xgb.cv work with xgb.DMatrix only, adding support for survival and ranking fields (#10031)
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Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2024-03-31 21:53:00 +08:00
david-cortes
2c12b956da
[R] Refactor callback structure and attributes (#9957) 2024-03-01 15:57:47 +08:00
david-cortes
f7005d32c1
[R] Use inplace predict (#9829)
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Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2024-02-24 02:03:54 +08:00
david-cortes
4de866211d
[R] switch to URI reader (#10024) 2024-02-05 05:03:38 +08:00
david-cortes
3abbbe41ac
[R] Add data iterator, quantile dmatrix, external memory, and missing feature_types (#9913) 2024-01-30 19:26:44 +08:00
david-cortes
5062a3ab46
[R] Support booster slicing. (#9948) 2024-01-21 05:11:26 +08:00
david-cortes
60b9d2eeb9
[R] Avoid memory copies in predict (#9902) 2024-01-21 00:53:18 +08:00
david-cortes
d3a8d284ab
[R] On-demand serialization + standardization of attributes (#9924)
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Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-01-11 05:08:42 +08:00
david-cortes
3c004a4145
[R] Add missing DMatrix functions (#9929)
* `XGDMatrixGetQuantileCut`
* `XGDMatrixNumNonMissing`
* `XGDMatrixGetDataAsCSR`

---------

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2024-01-03 17:29:21 +08:00
Jiaming Yuan
faf0f2df10
Support dataframe data format in native XGBoost. (#9828)
- Implement a columnar adapter.
- Refactor Python pandas handling code to avoid converting into a single numpy array.
- Add support in R for transforming columns.
- Support R data.frame and factor type.
2023-12-12 09:56:31 +08:00
david-cortes
562352101d
[R] Move all DMatrix fields to function arguments (#9862) 2023-12-10 02:45:28 +08:00
david-cortes
62571b79eb
[R] Enable multi-output objectives (#9839) 2023-12-06 03:13:14 +08:00
James Lamb
730bc1f688
[R] remove unused headers (#9546) 2023-09-14 17:11:26 +08:00
Jiaming Yuan
972730cde0
Use matrix for gradient. (#9508)
- Use the `linalg::Matrix` for storing gradients.
- New API for the custom objective.
- Custom objective for multi-class/multi-target is now required to return the correct shape.
- Custom objective for Python can accept arrays with any strides. (row-major, column-major)
2023-08-24 05:29:52 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672)
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
2023-02-05 01:59:46 +08:00
James Lamb
980233e648
[R] remove XGBoosterPredict_R (fixes #8687) (#8689) 2023-01-17 14:19:01 +08:00
Jiaming Yuan
28a466ab51
Fixes for R checks. (#8330)
- Bump configure.ac version.
- Remove amalgamation to reduce the build time for a single object with the added benefit that we can use parallel build during development.
- Fix c function prototype warning.
- Remove Windows automake file generation step to make the build script easier to understand.
2022-10-20 02:52:54 +08:00
Jiaming Yuan
210eb471e9
[R] Implement feature info for DMatrix. (#8048) 2022-07-09 05:57:39 +08:00
david-cortes
7f738e7f6f
[R] Accept CSR data for predictions (#7615) 2022-01-30 00:54:57 +08:00
Jiaming Yuan
81210420c6
Remove omp_get_max_threads (#7608)
This is the one last PR for removing omp global variable.

* Add context object to the `DMatrix`.  This bridges `DMatrix` with https://github.com/dmlc/xgboost/issues/7308 .
* Require context to be available at the construction time of booster.
* Add `n_threads` support for R csc DMatrix constructor.
* Remove `omp_get_max_threads` in R glue code.
* Remove threading utilities that rely on omp global variable.
2022-01-28 16:09:22 +08:00
Jiaming Yuan
d262503781
[R] Implement new save raw in R. (#7571) 2022-01-22 20:55:47 +08:00
david-cortes
61a619b5c3
[R] Avoid symbol naming conflicts with other packages (#7245)
* don't register all R symbols

* typo
2021-09-19 11:17:08 -07:00
Jiaming Yuan
8ee127469f
[R] Fix nthread in DMatrix constructor. (#7127)
* Break the R C API for nthread.
2021-08-03 17:39:25 +08:00
Jiaming Yuan
663136aa08
Implement feature score for linear model. (#7048)
* Add feature score support for linear model.
* Port R interface to the new implementation.
* Add linear model support in Python.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2021-06-25 14:34:02 +08:00
Jiaming Yuan
b56614e9b8
[R] Use new predict function. (#6819)
* Call new C prediction API.
* Add `strict_shape`.
* Add `iterationrange`.
* Update document.
2021-06-11 13:03:29 +08:00
david-cortes
4e1a8b1fe5
Update R handles in-place (#6903)
* update R handles in-place #fixes 6896

* update test to expect non-null handle

* remove unused variable

* fix failing tests

* solve linter complains
2021-04-29 12:50:46 -07:00
Philip Hyunsu Cho
fb56da5e8b
Add global configuration (#6414)
* Add management functions for global configuration: XGBSetGlobalConfig(), XGBGetGlobalConfig().
* Add Python interface: set_config(), get_config(), and config_context().
* Add unit tests for Python
* Add R interface: xgb.set.config(), xgb.get.config()
* Add unit tests for R

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-12-03 00:05:18 -08:00
Jiaming Yuan
b56c902841
[R] R raw serialization. (#5123)
* Add bindings for serialization.
* Change `xgb.save.raw' into full serialization instead of simple model.
* Add `xgb.load.raw' for unserialization.
* Run devtools.
2020-04-11 17:16:54 +08:00
Jiaming Yuan
ed2465cce4
Add configuration to R interface. (#5217)
* Save and load internal parameter configuration as JSON.
2020-02-16 03:01:58 +08:00
Kodi Arfer
f100b8d878 [Breaking] Don't drop trees during DART prediction by default (#5115)
* Simplify DropTrees calling logic

* Add `training` parameter for prediction method.

* [Breaking]: Add `training` to C API.

* Change for R and Python custom objective.

* Correct comment.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-01-13 21:48:30 +08:00
Jiaming Yuan
2e618af743
Fix cpplint. (#4157)
* Add comment after #endif.
* Add missing headers.
2019-02-18 00:16:29 +08:00
Tong He
98be9aef9a
A fix for CRAN submission of version 0.7-0 (#3061)
* modify test_helper.R

* fix noLD

* update desc

* fix solaris test

* fix desc

* improve fix

* fix url
2018-01-27 17:06:28 -08:00
Vadim Khotilovich
74db9757b3 [R package] GPU support (#2732)
* [R] MSVC compatibility

* [GPU] allow seed in BernoulliRng up to size_t and scale to uint32_t

* R package build with cmake and CUDA

* R package CUDA build fixes and cleanups

* always export the R package native initialization routine on windows

* update the install instructions doc

* fix lint

* use static_cast directly to set BernoulliRng seed

* [R] demo for GPU accelerated algorithm

* tidy up the R package cmake stuff

* R pack cmake: installs main dependency packages if needed

* [R] version bump in DESCRIPTION

* update NEWS

* added short missing/sparse values explanations to FAQ
2017-09-28 18:15:28 -05:00
Vadim Khotilovich
c66ca79221 [R] native routines registration (#2290)
* [R] add native routines registration

* c_api.h needs to include <cstdint> since it uses fixed width integer types

* [R] use registered native routines from R code

* [R] bump version; add info on native routine registration to the contributors guide

* make lint happy
2017-05-14 11:00:46 -07:00