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Philip Hyunsu Cho
42c5ee5588
[jvm-packages] Bump version of akka packages (#8524) 2022-12-05 22:45:00 +08:00
Jiaming Yuan
e3bf5565ab
Extract transform iterator. (#8498) 2022-12-05 21:37:07 +08:00
Jiaming Yuan
d8544e4d9e
[R] Remove unused assert definition. (#8526) 2022-12-05 20:29:03 +08:00
dependabot[bot]
d8d2eefa63
Bump junit from 4.13.1 to 4.13.2 in /jvm-packages/xgboost4j-gpu (#8516) 
Bumps [junit](https://github.com/junit-team/junit4) from 4.13.1 to 4.13.2.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.13.1.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.13.1...r4.13.2)

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 2022-12-05 19:11:33 +08:00
dependabot[bot]
8e8d3ac708
Bump kryo from 4.0.2 to 5.3.0 in /jvm-packages (#8503) 
Bumps [kryo](https://github.com/EsotericSoftware/kryo) from 4.0.2 to 5.3.0.
- [Release notes](https://github.com/EsotericSoftware/kryo/releases)
- [Commits](https://github.com/EsotericSoftware/kryo/compare/kryo-parent-4.0.2...kryo-parent-5.3.0)

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 2022-12-05 18:01:59 +08:00
dependabot[bot]
3bfe90c183
Bump exec-maven-plugin in /jvm-packages/xgboost4j-gpu (#8531) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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 2022-12-05 17:41:41 +08:00
dependabot[bot]
a903241fbf
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j-gpu (#8530) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 2.10.3 to 3.4.1.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-2.10.3...maven-javadoc-plugin-3.4.1)

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 2022-12-05 16:32:08 +08:00
Bobby Wang
f1e9bbcee5
[breakinig] [jvm-packages] change DeviceQuantileDmatrix into QuantileDMatrix (#8461) 2022-12-05 12:23:21 +08:00
Rong Ou
78d65a1928
Initial support for column-wise data split (#8468) 2022-12-04 01:37:51 +08:00
dependabot[bot]
c0609b98f1
Bump exec-maven-plugin from 1.6.0 to 3.1.0 in /jvm-packages/xgboost4j (#8518) 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.6.0 to 3.1.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.6.0...exec-maven-plugin-3.1.0)

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 2022-12-02 17:24:22 -08:00
dependabot[bot]
ba0ed255ef
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages/xgboost4j-gpu (#8512) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

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 2022-12-02 17:23:03 -08:00
dependabot[bot]
1d8bb7332f
Bump maven-resources-plugin in /jvm-packages/xgboost4j (#8515) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.3.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.3.0)

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 2022-12-02 17:22:26 -08:00
dependabot[bot]
dcc92a6703
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages/xgboost4j (#8517) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

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 2022-12-02 17:21:42 -08:00
dependabot[bot]
fcafd3a777
Bump maven-jar-plugin from 3.0.2 to 3.3.0 in /jvm-packages (#8506) 
Bumps [maven-jar-plugin](https://github.com/apache/maven-jar-plugin) from 3.0.2 to 3.3.0.
- [Release notes](https://github.com/apache/maven-jar-plugin/releases)
- [Commits](https://github.com/apache/maven-jar-plugin/compare/maven-jar-plugin-3.0.2...maven-jar-plugin-3.3.0)

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 2022-12-02 17:21:01 -08:00
dependabot[bot]
b23e97f8b0
Bump maven-resources-plugin from 3.1.0 to 3.3.0 in /jvm-packages (#8504) 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.3.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.3.0)

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 2022-12-02 17:20:37 -08:00
Bobby Wang
8e41ad24f5
[pyspark] sort qid for SparkRanker (#8497) 
* [pyspark] sort qid for SparkRandker

* resolve comments
 2022-12-01 16:40:35 -08:00
dependabot[bot]
f747e05eac
Bump maven-deploy-plugin from 2.8.2 to 3.0.0 in /jvm-packages (#8502) 
Bumps [maven-deploy-plugin](https://github.com/apache/maven-deploy-plugin) from 2.8.2 to 3.0.0.
- [Release notes](https://github.com/apache/maven-deploy-plugin/releases)
- [Commits](https://github.com/apache/maven-deploy-plugin/compare/maven-deploy-plugin-2.8.2...maven-deploy-plugin-3.0.0)

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 2022-12-01 16:39:59 -08:00
Philip Hyunsu Cho
2546d139d6
[jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu (#8508) 
* [jvm-packages] Add missing commons-lang3 dependency to xgboost4j-gpu

* Update commons-lang3
 2022-12-01 16:27:11 -08:00
Philip Hyunsu Cho
7c6f2346d3
[jvm-packages] Configure dependabot properly (#8507) 
* [jvm-packages] Configure dependabot properly

* Allow automatic updates for Scala and Spark within the same major version
 2022-12-01 16:26:47 -08:00
Philip Hyunsu Cho
f550109641
Bump some old dependencies of JVM packages (#8456) 2022-11-30 23:04:08 -08:00
Philip Hyunsu Cho
9a98e79649
[jvm-packages] Set up dependabot (#8501) 2022-11-30 22:46:17 -08:00
Rong Ou
a8255ea678
Add an in-memory collective communicator (#8494) 2022-12-01 00:24:12 +08:00
Jiaming Yuan
157e98edf7
Support half type from cupy. (#8487) 2022-11-30 17:56:42 +08:00
Jiaming Yuan
addaa63732
Support null value in CUDA array interface. (#8486) 
* Support null value in CUDA array interface.

- Fix for potential null value in array interface.
- Fix incorrect check on mask stride.

* Simple tests.

* Extract mask.
 2022-11-28 17:48:25 -08:00
Jiaming Yuan
3fc1046fd3
Reduce compiler warnings on CPU-only build. (#8483) 2022-11-29 00:04:16 +08:00
Jiaming Yuan
d666ba775e
Support all pandas nullable integer types. (#8480) 
- Enumerate all pandas integer types.
- Tests for `None`, `nan`, and `pd.NA`
 2022-11-28 22:38:16 +08:00
Jiaming Yuan
f2209c1fe4
Don't shuffle columns in categorical tests. (#8446) 2022-11-28 20:28:06 +08:00
WeichenXu
67ea1c3435
[pyspark] Make QDM optional based on cuDF check (#8471) 2022-11-27 14:58:54 +08:00
Jiaming Yuan
8f97c92541
Support half type for pandas. (#8481) 2022-11-24 12:47:40 +08:00
Jiaming Yuan
e07245f110
Take datatable as row major input. (#8472) 
* Take datatable as row major input.

Try to avoid a transform with dense table.
 2022-11-24 09:20:13 +08:00
Jiaming Yuan
284dcf8d22
Add script for change version. (#8443) 
- Replace jvm regex replacement script with mvn command.
- Replace cmake script for python version with python script.
- Automate rest of the manual steps.

The script can handle dev branch, rc release, and formal release version.
 2022-11-24 00:06:39 +08:00
Jiaming Yuan
5f1a6fca0d
[R] Use new interface for creating DMatrix from CSR. (#8455) 
* [R] Use new interface for creating DMatrix from CSR.

- CSC is still using the old API.

The old API is not aware of `nthread` parameter, which makes DMatrix to use all available
thread during construction and during transformation lie `SparsePage` -> `CSCPage`.
 2022-11-23 21:36:43 +08:00
Nick Becker
58d211545f
explain cpu/gpu interop and link to model IO tutorial (#8450) 2022-11-23 20:58:28 +08:00
Bobby Wang
2dde65f807
[ci] reduce pyspark test time (#8324) 2022-11-21 16:58:00 +08:00
Joyce
3b8a0e08f7
feat: use commit hash instead of version to actions workflows (#8460) 
Signed-off-by: Joyce Brum <joycebrum@google.com>

Signed-off-by: Joyce Brum <joycebrum@google.com>
 2022-11-17 22:04:11 +08:00
Rong Ou
30b1a26fc0
Remove unused page size constant (#8457) 2022-11-17 11:41:39 +08:00
Otto von Sperling
812d577597
Fix inline code blocks in 'spark_estimator.rst' (#8465) 2022-11-15 05:47:58 +08:00
Robert Maynard
16f96b6cfb
Work with newer thrust and libcudacxx (#8454) 
* Thrust 1.17 removes the experimental/pinned_allocator.

When xgboost is brought into a large project it can
be compiled against Thrust 1.17+ which don't offer
this experimental allocator.

To ensure that going forward xgboost works in all environments we provide a xgboost namespaced version of
the pinned_allocator that previously was in Thrust.
 2022-11-11 04:22:53 +08:00
Gavin Zhang
0c6266bc4a
SO_DOMAIN do not support on IBM i, using getsockname instead (#8437) 
Co-authored-by: GavinZhang <zhanggan@cn.ibm.com>
 2022-11-10 23:54:57 +08:00
Jiaming Yuan
9dd8d70f0e
Fix mypy errors. (#8444) 2022-11-09 13:19:11 +08:00
Jiaming Yuan
0252d504d8
Fix R package build on CI. (#8445) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 12:18:36 +08:00
Jiaming Yuan
a83748eb45
[CI] Revise R tests. (#8430) 
- Use the standard package check (check on the tarball instead of the source tree).
- Run commands in parallel.
- Cleanup dependencies installation.
- Replace makefile.
- Documentation.
- Test using the image from rhub.
 2022-11-09 09:12:13 +08:00
Rong Ou
4449e30184
Always link federated proto statically (#8442) 2022-11-09 07:47:38 +08:00
Jiaming Yuan
ca0f7f2714
[doc] Update C tutorial. [skip ci] (#8436) 
- Use rst references instead of doxygen links.
- Replace deprecated functions.

- Add SaveModel; put free step last [skip ci]

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2022-11-09 07:14:12 +08:00
Jiaming Yuan
0b36f8fba1
[R] Fix CRAN test notes. (#8428) 
- Limit the number of used CPU cores in examples.
- Add a note for the constraint.
- Bring back the cleanup script.
 2022-11-09 02:03:30 +08:00
Rong Ou
8e76f5f595
Use DataSplitMode to configure data loading (#8434) 
* Use `DataSplitMode` to configure data loading
 2022-11-08 16:21:50 +08:00
Jiaming Yuan
0d3da9869c
Require isort on all Python files. (#8420) 2022-11-08 12:59:06 +08:00
James Lamb
bf8de227a9
[CI] remove unused import in python tests (#8409) 2022-11-03 22:27:25 +08:00
James Lamb
b1b2524dbb
add files from python tests to .gitignore (#8410) 2022-11-03 07:57:45 +08:00
Rong Ou
99fa8dad2d
Add back xgboost.rabit for backwards compatibility (#8408) 
* Add back xgboost.rabit for backwards compatibility

* fix my errors

* Fix lint

* Use FutureWarning

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2022-11-01 21:47:41 -07:00