435 Commits

Author SHA1 Message Date
Igor Moura
d1254808d5
Clean up C++ warnings (#6213) 2020-10-19 23:02:33 +08:00
Jiaming Yuan
6d293020fb
Disable JSON full serialization for now. (#6248)
* Disable JSON serialization for now.

* Multi-class classification is checkpointing for each iteration.
This brings significant overhead.

Revert: 90355b4f007ae

* Set R tests to use binary.
2020-10-16 17:59:54 +08:00
vcarpani
6bc9747df5
Reduce compile warnings (#6198)
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-10-08 23:14:59 +08:00
ShvetsKS
a4ce0eae43
CPU predict performance improvement (#6127)
Co-authored-by: ShvetsKS <kirill.shvets@intel.com>
2020-10-08 15:50:21 +03:00
Rory Mitchell
dda9e1e487
Update GPUTreeshap (#6163)
* Reduce shap test duration

* Test interoperability with shap package

* Add feature interactions

* Update GPUTreeShap
2020-09-28 09:43:47 +13:00
Jiaming Yuan
7065779afa
Improve JSON format for categorical features. (#6128)
* Gather categories for all nodes.
2020-09-21 15:35:05 +08:00
Jiaming Yuan
a069a21e03
Implement intrusive ptr (#6129)
* Use intrusive ptr for JSON.
2020-09-20 20:07:16 +08:00
Rory Mitchell
2e907abdb8
Updates to GPUTreeShap (#6087)
* Extract paths on device

* Update GPUTreeShap
2020-09-06 13:39:08 +12:00
Jiaming Yuan
2fcc4f2886
Unify evaluation functions. (#6037) 2020-08-26 14:23:27 +08:00
Jiaming Yuan
80c8547147
Make binary bin search reusable. (#6058)
* Move binary search row to hist util.
* Remove dead code.
2020-08-26 05:05:11 +08:00
Jiaming Yuan
81d8dd79ca
Bump header version. (#6056) 2020-08-26 00:29:00 +08:00
Jiaming Yuan
20c95be625
Expand categorical node. (#6028)
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2020-08-25 18:53:57 +08:00
Jiaming Yuan
90355b4f00
Make JSON the default full serialization format. (#6027) 2020-08-19 09:57:43 +08:00
Qi Zhang
989ddd036f
Swap byte-order in binary serializer to support big-endian arch (#5813)
* fixed some endian issues

* Use dmlc::ByteSwap() to simplify code

* Fix lint check

* [CI] Add test for s390x

* Download latest CMake on s390x

* Fix a bug in my code

* Save magic number in dmatrix with byteswap on big-endian machine

* Save version in binary with byteswap on big-endian machine

* Load scalar with byteswap in MetaInfo

* Add a debugging message

* Handle arrays correctly when byteswapping

* EOF can also be 255

* Handle magic number in MetaInfo carefully

* Skip Tree.Load test for big-endian, since the test manually builds little-endian binary model

* Handle missing packages in Python tests

* Don't use boto3 in model compatibility tests

* Add s390 Docker file for local testing

* Add model compatibility tests

* Add R compatibility test

* Revert "Add R compatibility test"

This reverts commit c2d2bdcb7dbae133cbb927fcd20f7e83ee2b18a8.

Co-authored-by: Qi Zhang <q.zhang@ibm.com>
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-08-18 14:47:17 -07:00
Jiaming Yuan
4d99c58a5f
Feature weights (#5962) 2020-08-18 19:55:41 +08:00
Jiaming Yuan
674c409e9d
Remove rabit dependency on public headers. (#6005) 2020-08-13 08:26:20 +08:00
Jiaming Yuan
ee70a2380b
Unify CPU hist sketching (#5880) 2020-08-12 01:33:06 +08:00
boxdot
d268a2a463
Thread-safe prediction by making the prediction cache thread-local. (#5853)
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-07-30 12:33:50 +08:00
Alexander Gugel
970b4b3fa2
Add XGBoosterGetNumFeature (#5856)
- add GetNumFeature to Learner
- add XGBoosterGetNumFeature to C API
- update c-api-demo accordingly
2020-07-13 23:25:17 -07:00
Jiaming Yuan
048d969be4
Implement GK sketching on GPU. (#5846)
* Implement GK sketching on GPU.
* Strong tests on quantile building.
* Handle sparse dataset by binary searching the column index.
* Hypothesis test on dask.
2020-07-07 12:16:21 +08:00
Jiaming Yuan
93c44a9a64
Move feature names and types of DMatrix from Python to C++. (#5858)
* Add thread local return entry for DMatrix.
* Save feature name and feature type in binary file.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2020-07-07 09:40:13 +08:00
Philip Hyunsu Cho
efe3e48ae2
Ensure that LoadSequentialFile() actually read the whole file (#5831) 2020-07-04 16:17:11 +08:00
Jiaming Yuan
1a0801238e
Implement iterative DMatrix. (#5837) 2020-07-03 11:44:52 +08:00
Jiaming Yuan
90a9c68874
Implement a DMatrix Proxy. (#5803) 2020-06-29 15:03:10 +08:00
Jiaming Yuan
c4d721200a
Implement extend method for meta info. (#5800)
* Implement extend for host device vector.
2020-06-20 03:32:03 +08:00
Jiaming Yuan
38ee514787
Implement fast number serialization routines. (#5772)
* Implement ryu algorithm.
* Implement integer printing.
* Full coverage roundtrip test.
2020-06-17 12:39:23 +08:00
Jiaming Yuan
1fa84b61c1
Implement Empty method for host device vector. (#5781)
* Fix accessing nullptr.
2020-06-13 19:02:26 +08:00
Philip Hyunsu Cho
1d22a9be1c
Revert "Reorder includes. (#5749)" (#5771)
This reverts commit d3a0efbf162f3dceaaf684109e1178c150b32de3.
2020-06-09 10:29:28 -07:00
Jiaming Yuan
d3a0efbf16
Reorder includes. (#5749)
* Reorder includes.

* R.
2020-06-03 17:30:47 +12:00
ShvetsKS
cd3d14ad0e
Add float32 histogram (#5624)
* new single_precision_histogram param was added.

Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
Co-authored-by: fis <jm.yuan@outlook.com>
2020-06-03 11:24:53 +08:00
Jiaming Yuan
325156c7a9
Bump version in header. (#5742) 2020-06-01 18:21:18 +08:00
Jiaming Yuan
21ed1f0c6d
Support 64bit seed. (#5643) 2020-05-07 14:52:38 +08:00
Jiaming Yuan
67d267f9da
Move device dmatrix construction code into ellpack. (#5623) 2020-05-06 19:43:59 +08:00
Jiaming Yuan
33e052b1e5
Remove dead code. (#5635) 2020-05-06 17:03:48 +08:00
Philip Hyunsu Cho
8de7f1928e
Fix build on big endian CPUs (#5617)
* Fix build on big endian CPUs

* Clang-tidy
2020-04-29 21:56:34 -07:00
Jason E. Aten, Ph.D
8dfe7b3686
Clarify meaning of training parameter in XGBoosterPredict() (#5604)
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
2020-04-25 16:48:42 -07:00
Philip Hyunsu Cho
474cfddf91
[R] Address warnings to comply with CRAN submission policy (#5600)
* [R] Address warnings to comply with CRAN submission policy

* Include <xgboost/logging.h>
2020-04-25 13:34:36 -07:00
Jiaming Yuan
e726dd9902
Set device in device dmatrix. (#5596) 2020-04-25 13:42:53 +08:00
Philip Hyunsu Cho
ef26bc45bf
Hide C++ symbols in libxgboost.so when building Python wheel (#5590)
* Hide C++ symbols in libxgboost.so when building Python wheel

* Update Jenkinsfile

* Add test

* Upgrade rabit

* Add setup.py option.

Co-authored-by: fis <jm.yuan@outlook.com>
2020-04-24 13:32:05 -07:00
Jiaming Yuan
29a4cfe400
Group aware GPU sketching. (#5551)
* Group aware GPU weighted sketching.

* Distribute group weights to each data point.
* Relax the test.
* Validate input meta info.
* Fix metainfo copy ctor.
2020-04-20 17:18:52 +08:00
Jiaming Yuan
e1f22baf8c
Fix slice and get info. (#5552) 2020-04-18 18:00:13 +08:00
Jiaming Yuan
7d52c0b8c2
Requires setting leaf stat when expanding tree. (#5501)
* Fix GPU Hist feature importance.
2020-04-10 12:27:03 +08:00
Jiaming Yuan
6671b42dd4
Use ellpack for prediction only when sparsepage doesn't exist. (#5504) 2020-04-10 12:15:46 +08:00
Bobby Wang
ad826e913f
[jvm-packages]add feature size for LabelPoint and DataBatch (#5303)
* fix type error

* Validate number of features.

* resolve comments

* add feature size for LabelPoint and DataBatch

* pass the feature size to native

* move feature size validating tests into a separate suite

* resolve comments

Co-authored-by: fis <jm.yuan@outlook.com>
2020-04-07 16:49:52 -07:00
Jiaming Yuan
0012f2ef93
Upgrade clang-tidy on CI. (#5469)
* Correct all clang-tidy errors.
* Upgrade clang-tidy to 10 on CI.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-04-05 04:42:29 +08:00
Jiaming Yuan
a9313802ea
Fix dump model. (#5485) 2020-04-05 03:52:54 +08:00
Jiaming Yuan
86beb68ce8
Implement host span. (#5459) 2020-04-03 10:37:51 +08:00
Jiaming Yuan
d0b86c75d9
Remove silent parameter. (#5476) 2020-04-03 08:03:26 +08:00
Jiaming Yuan
babcb996e7
Reduce span check overhead. (#5464) 2020-04-01 22:07:24 +08:00
Jiaming Yuan
6601a641d7
Thread safe, inplace prediction. (#5389)
Normal prediction with DMatrix is now thread safe with locks.  Added inplace prediction is lock free thread safe.

When data is on device (cupy, cudf), the returned data is also on device.

* Implementation for numpy, csr, cudf and cupy.

* Implementation for dask.

* Remove sync in simple dmatrix.
2020-03-30 15:35:28 +08:00