3651 Commits

Author SHA1 Message Date
Nan Zhu
359ed9c5bc
[jvm-packages] add configuration flag to control whether to cache transformed training set (#4268)
* control whether to cache data

* uncache
2019-03-18 10:13:28 +08:00
Jiaming Yuan
29a1356669
Deprecate reg:linear' in favor of reg:squarederror'. (#4267)
* Deprecate `reg:linear' in favor of `reg:squarederror'.
* Replace the use of `reg:linear'.
* Replace the use of `silent`.
2019-03-17 17:55:04 +08:00
Jiaming Yuan
cf8d5b9b76
Mark CUDA 10.1 as unsupported. (#4265) 2019-03-17 16:59:15 +08:00
Jiaming Yuan
fdcae024e7
Remove deprecated C APIs. (#4266) 2019-03-17 16:42:44 +08:00
Jiaming Yuan
7b1b11390a
Mark Scikit-Learn RF interface as experimental in doc. (#4258)
* Mark Scikit-Learn RF interface as experimental in doc.
2019-03-16 00:45:32 +08:00
Rory Mitchell
5465b73e7c
Fix multi-GPU test failures (#4259) 2019-03-15 14:40:43 +13:00
Andy Adinets
4352fcdb15 Brought the silent parameter for the SKLearn-like API back, marked it deprecated. (#4255)
* Brought the silent parameter for the SKLearn-like API back, marked it deprecated.

- added deprecation notice and warning
- removed silent from the tests for the SKLearn-like API
2019-03-14 09:45:08 +13:00
Andy Adinets
b833b642ec Improved multi-node multi-GPU random forests. (#4238)
* Improved multi-node multi-GPU random forests.

- removed rabit::Broadcast() from each invocation of column sampling
- instead, syncing the PRNG seed when a ColumnSampler() object is constructed
- this makes non-trivial column sampling significantly faster in the distributed case
- refactored distributed GPU tests
- added distributed random forests tests
2019-03-13 12:36:28 +13:00
Philip Hyunsu Cho
99a714be64 Simplify README page (#4254) 2019-03-12 11:58:08 -07:00
Jiaming Yuan
7b9043cf71
Fix clang-tidy warnings. (#4149)
* Upgrade gtest for clang-tidy.
* Use CMake to install GTest instead of mv.
* Don't enforce clang-tidy to return 0 due to errors in thrust.
* Add a small test for tidy itself.

* Reformat.
2019-03-13 02:25:51 +08:00
Tong He
259fb809e9
fix R-devel errors (#4251) 2019-03-12 10:06:54 -07:00
Andy Adinets
a36c3ed4f4 Added SKLearn-like random forest Python API. (#4148)
* Added SKLearn-like random forest Python API.

- added XGBRFClassifier and XGBRFRegressor classes to SKL-like xgboost API
- also added n_gpus and gpu_id parameters to SKL classes
- added documentation describing how to use xgboost for random forests,
  as well as existing caveats
2019-03-12 22:28:19 +08:00
jess
6fb4c5efef Activating Open Collective (#4244)
* Added backers and sponsors on the README

* Re-arrange sections

* Resize AWS logo
2019-03-11 15:36:29 -07:00
Rory Mitchell
4eeeded7d1
Remove various synchronisations from cuda API calls, instrument monitor (#4205)
* Remove various synchronisations from cuda API calls, instrument monitor
with nvtx profiler ranges.
2019-03-10 15:01:23 +13:00
Philip Hyunsu Cho
f83e62dca5
Address #4042: Prevent out-of-range access in column matrix (#4231) 2019-03-08 17:11:42 -08:00
Philip Hyunsu Cho
331cd3e4f7
Document limitation of one-split-at-a-time Greedy tree learning heuristic (#4233) 2019-03-08 10:05:39 -08:00
Jiaming Yuan
617f572c0f
Update R contribute link. (#4236) 2019-03-09 01:50:07 +08:00
Philip Hyunsu Cho
20845e8ccf
Broken link for NCCL: cannot use CUDA 10.1 (#4232) 2019-03-08 09:10:29 -08:00
Shaochen Shi
224786f67f [xgboost4j-spark] Allow set the parameter "maxLeaves". (#4226)
* Allow set the parameter "maxLeaves".

* Add "setMaxLeaves" to XGBoostRegressor.
2019-03-07 18:36:47 -08:00
Rong Ou
9837b09b20 support cuda 10.1 (#4223)
* support cuda 10.1

* add cuda 10.1 to jenkins build matrix
2019-03-08 12:22:12 +13:00
Rong Ou
0944360416 minor fix: log InitDataOnce() only when it is actually called (#4206) 2019-03-08 10:53:09 +13:00
Christopher Suchanek
ac3d03089b [jvm-packages] remove shutdown of handler shutdown (#4224) 2019-03-06 19:32:43 -08:00
Philip Hyunsu Cho
28bd6cde22 Add sponsors (#4222) 2019-03-06 13:11:06 -08:00
Jonas
00ea7b83c9 Fix docs for num_parallel_tree (#4221)
Minor formatting correction for `num_parallel_tree`.
2019-03-06 23:47:51 +08:00
Philip Hyunsu Cho
67c38805a1
Update build doc: PyPI wheel now support multi-GPU (#4219) 2019-03-05 13:25:31 -08:00
Nan Zhu
5f34078fba
[jvm-packages] bump version for master (#4209)
* update version

* bump version
2019-03-04 23:12:24 -08:00
Philip Hyunsu Cho
3f83dcd502
Release 0.82 (#4201) v0.82 2019-03-04 18:14:36 -08:00
Adam November
0c1d5f1120 Fix snapshot artifact name in docs. (#4196) 2019-03-03 13:27:50 -08:00
Matthew Jones
92b7577c62 [REVIEW] Enable Multi-Node Multi-GPU functionality (#4095)
* Initial commit to support multi-node multi-gpu xgboost using dask

* Fixed NCCL initialization by not ignoring the opg parameter.

- it now crashes on NCCL initialization, but at least we're attempting it properly

* At the root node, perform a rabit::Allreduce to get initial sum_gradient across workers

* Synchronizing in a couple of more places.

- now the workers don't go down, but just hang
- no more "wild" values of gradients
- probably needs syncing in more places

* Added another missing max-allreduce operation inside BuildHistLeftRight

* Removed unnecessary collective operations.

* Simplified rabit::Allreduce() sync of gradient sums.

* Removed unnecessary rabit syncs around ncclAllReduce.

- this improves performance _significantly_ (7x faster for overall training,
  20x faster for xgboost proper)

* pulling in latest xgboost

* removing changes to updater_quantile_hist.cc

* changing use_nccl_opg initialization, removing unnecessary if statements

* added definition for opaque ncclUniqueId struct to properly encapsulate GetUniqueId

* placing struct defintion in guard to avoid duplicate code errors

* addressing linting errors

* removing

* removing additional arguments to AllReduer initialization

* removing distributed flag

* making comm init symmetric

* removing distributed flag

* changing ncclCommInit to support multiple modalities

* fix indenting

* updating ncclCommInitRank block with necessary group calls

* fix indenting

* adding print statement, and updating accessor in vector

* improving print statement to end-line

* generalizing nccl_rank construction using rabit

* assume device_ordinals is the same for every node

* test, assume device_ordinals is identical for all nodes

* test, assume device_ordinals is unique for all nodes

* changing names of offset variable to be more descriptive, editing indenting

* wrapping ncclUniqueId GetUniqueId() and aesthetic changes

* adding synchronization, and tests for distributed

* adding  to tests

* fixing broken #endif

* fixing initialization of gpu histograms, correcting errors in tests

* adding to contributors list

* adding distributed tests to jenkins

* fixing bad path in distributed test

* debugging

* adding kubernetes for distributed tests

* adding proper import for OrderedDict

* adding urllib3==1.22 to address ordered_dict import error

* added sleep to allow workers to save their models for comparison

* adding name to GPU contributors under docs
2019-03-02 10:03:22 +13:00
Yanbo Liang
9fefa2128d [jvm-packages] Fix early stop with xgboost4j-spark (#4176)
* Fix early stop with xgboost4j-spark

* Update XGBoost.java

* Update XGBoost.java

* Update XGBoost.java

To use -Float.MAX_VALUE as the lower bound, in case there is positive metric.

* Only update best score if the current score is better (no update when equal)

* Update xgboost-spark tutorial to fix early stopping docs.
2019-03-01 13:02:57 -08:00
Jiaming Yuan
7ea5675679
Add PushCSC for SparsePage. (#4193)
* Add PushCSC for SparsePage.

* Move Push* definitions into cc file.
* Add std:: prefix to `size_t` make clang++ happy.
* Address monitor count == 0.
2019-03-02 01:58:08 +08:00
Patrick Ford
74009afcac Added trees_to_df() method for Booster class (#4153)
* add test_parse_tree.py to tests/python

* Fix formatting

* Fix pylint error

* Ignore 'no member' error for Pandas dataframe
2019-02-26 13:28:24 -08:00
Nan Zhu
1b7405f688
[jvm-packages] fix comments in objectiveTrait (#4174) 2019-02-22 00:32:13 -08:00
Nan Zhu
dc2add96c5
[jvm-packages] upgrade spark version (#4170) 2019-02-21 11:51:36 -08:00
Rong Ou
8e0a08fbcf Update python benchmarking script (#4164)
* a few tweaks to speed up data generation

* del variable to save memory

* switch to random numpy arrays
2019-02-21 15:16:09 +13:00
Abhai Kollara Dilip
54793544a2 Update README.rst (#4167)
Fixes error when copy pasting.
2019-02-20 14:46:56 -08:00
Philip Hyunsu Cho
2aaae2e7bb
Fix #4163: always copy sliced data (#4165)
* Revert "Accept numpy array view. (#4147)"

This reverts commit a985a99cf0dacb26a5d734835473d492d3c2a0df.

* Fix #4163: always copy sliced data

* Remove print() from the test; check shape equality

* Check if 'base' attribute exists

* Fix lint

* Address reviewer comment

* Fix lint
2019-02-20 14:46:34 -08:00
Jiaming Yuan
cecbe0cf71 Fix test_gpu_coordinate. (#3974)
* Fix test_gpu_coordinate.

* Use `gpu_coord_descent` in test.
* Reduce number of running rounds.

* Remove nthread.

* Use githubusercontent for r-appveyor.

* Use githubusercontent in travis r tests.
2019-02-19 14:09:10 -08:00
Rory Mitchell
c8c472f39a
Fix incorrect device in multi-GPU algorithm (#4161) 2019-02-20 09:23:15 +13:00
Nan Zhu
1dac5e2410
more correct way to build node stats in distributed fast hist (#4140)
* add back train method but mark as deprecated

* add back train method but mark as deprecated

* add back train method but mark as deprecated

* fix scalastyle error

* fix scalastyle error

* fix scalastyle error

* fix scalastyle error

* more changes

* temp

* update

* udpate rabit

* change the histogram

* update kfactor

* sync per node stats

* temp

* update

* final

* code clean

* update rabit

* more cleanup

* fix errors

* fix failed tests

* enforce c++11

* broadcast subsampled feature correctly

* init col

* temp

* col sampling

* fix histmastrix init

* fix col sampling

* remove cout

* fix out of bound access

* fix core dump

remove core dump file

* update

* add fid

* update

* revert some changes

* temp

* temp

* pass all tests

* bring back some tests

* recover some changes

* fix lint issue

* enable monotone and interaction constraints

* don't specify default for monotone and interactions

* recover column init part

* more recovery

* fix core dumps

* code clean

* revert some changes

* fix test compilation issue

* fix lint issue

* resolve compilation issue

* fix issues of lint caused by rebase

* fix stylistic changes and change variable names

* modularize depth width

* address the comments

* fix failed tests

* wrap perf timers with class

* temp

* pass all lossguide

* pass tests

* add comments

* more changes

* use separate flow for single and tests

* add test for lossguide hist

* remove duplications

* syncing stats for only once

* recover more changes

* recover more changes

* fix root-stats

* simplify code

* remove outdated comments
2019-02-18 13:45:30 -08:00
Jiaming Yuan
a985a99cf0
Accept numpy array view. (#4147)
* Accept array view (slice) in metainfo.
2019-02-18 22:21:34 +08:00
Jiaming Yuan
0ff84d950e
Upgrade rabit. (#4159) 2019-02-18 22:16:58 +08:00
Kenichi Nagahara
60f05352c5 Fix typo in demo (#4156) 2019-02-18 18:42:41 +08:00
Philip Hyunsu Cho
549c8d6ae9
Prevent empty quantiles in fast hist (#4155)
* Prevent empty quantiles

* Revise and improve unit tests for quantile hist

* Remove unnecessary comment

* Add #2943 as a test case

* Skip test if no sklearn

* Revise misleading comments
2019-02-17 16:01:07 -08:00
Jiaming Yuan
e1240413c9
Fix gpu_hist apply_split test. (#4158) 2019-02-18 02:48:28 +08:00
Jiaming Yuan
2e618af743
Fix cpplint. (#4157)
* Add comment after #endif.
* Add missing headers.
2019-02-18 00:16:29 +08:00
Rory Mitchell
71a604fae3
Fix for windows compilation (#4139) 2019-02-17 19:42:32 +13:00
Jiaming Yuan
1fe874e58a
Fix empty subspan. (#4151)
* Silent the death tests.
2019-02-17 04:48:03 +08:00
Pasha Stetsenko
ff2d4c99fa Update datatable usage (#4123) 2019-02-17 03:44:09 +08:00
Jiaming Yuan
754fe8142b
Make `HistCutMatrix::Init' be aware of groups. (#4115)
* Add checks for group size.
* Simple docs.
* Search group index during hist cut matrix initialization.

Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
2019-02-16 04:39:41 +08:00