62 Commits

Author SHA1 Message Date
Andy Adinets
2a59ff2f9b Multi-GPU support in GPUPredictor. (#3738)
* Multi-GPU support in GPUPredictor.

- GPUPredictor is multi-GPU
- removed DeviceMatrix, as it has been made obsolete by using HostDeviceVector in DMatrix

* Replaced pointers with spans in GPUPredictor.

* Added a multi-GPU predictor test.

* Fix multi-gpu test.

* Fix n_rows < n_gpus.

* Reinitialize shards when GPUSet is changed.
* Tests range of data.

* Remove commented code.

* Remove commented code.
2018-10-23 22:59:11 -07:00
Rory Mitchell
70d208d68c
Dmatrix refactor stage 2 (#3395)
* DMatrix refactor 2

* Remove buffered rowset usage where possible

* Transition to c++11 style iterators for row access

* Transition column iterators to C++ 11
2018-10-01 01:29:03 +13:00
trivialfis
cf2d86a4f6 Add travis sanitizers tests. (#3557)
* Add travis sanitizers tests.

* Add gcc-7 in Travis.
* Add SANITIZER_PATH for CMake.
* Enable sanitizer tests in Travis.

* Fix memory leaks in tests.

* Fix all memory leaks reported by Address Sanitizer.
* tests/cpp/helpers.h/CreateDMatrix now returns raw pointer.
2018-08-19 16:40:30 +12:00
Rory Mitchell
a96039141a
Dmatrix refactor stage 1 (#3301)
* Use sparse page as singular CSR matrix representation

* Simplify dmatrix methods

* Reduce statefullness of batch iterators

* BREAKING CHANGE: Remove prob_buffer_row parameter. Users are instead recommended to sample their dataset as a preprocessing step before using XGBoost.
2018-06-07 10:25:58 +12:00
Rory Mitchell
ccf80703ef
Clang-tidy static analysis (#3222)
* Clang-tidy static analysis

* Modernise checks

* Google coding standard checks

* Identifier renaming according to Google style
2018-04-19 18:57:13 +12:00
Andrew V. Adinetz
d5992dd881 Replaced std::vector-based interfaces with HostDeviceVector-based interfaces. (#3116)
* Replaced std::vector-based interfaces with HostDeviceVector-based interfaces.

- replacement was performed in the learner, boosters, predictors,
  updaters, and objective functions
- only interfaces used in training were replaced;
  interfaces like PredictInstance() still use std::vector
- refactoring necessary for replacement of interfaces was also performed,
  such as using HostDeviceVector in prediction cache

* HostDeviceVector-based interfaces for custom objective function example plugin.
2018-02-28 13:00:04 +13:00
Rory Mitchell
7759ab99ee
Fix Google test warnings and error (#2957) 2017-12-20 00:13:56 +13:00
Rory Mitchell
13e7a2cff0 Various bug fixes (#2825)
* Fatal error if GPU algorithm selected without GPU support compiled

* Resolve type conversion warnings

* Fix gpu unit test failure

* Fix compressed iterator edge case

* Fix python unit test failures due to flake8 update on pip
2017-10-25 14:45:01 +13:00
Scott Lundberg
78c4188cec SHAP values for feature contributions (#2438)
* SHAP values for feature contributions

* Fix commenting error

* New polynomial time SHAP value estimation algorithm

* Update API to support SHAP values

* Fix merge conflicts with updates in master

* Correct submodule hashes

* Fix variable sized stack allocation

* Make lint happy

* Add docs

* Fix typo

* Adjust tolerances

* Remove unneeded def

* Fixed cpp test setup

* Updated R API and cleaned up

* Fixed test typo
2017-10-12 12:35:51 -07:00
Rory Mitchell
e6a9063344 Integer gradient summation for GPU histogram algorithm. (#2681) 2017-09-08 15:07:29 +12:00
Rory Mitchell
15267eedf2 [GPU-Plugin] Major refactor 2 (#2664)
* Change cmake option

* Move source files

* Move google tests

* Move python tests

* Move benchmarks

* Move documentation

* Remove makefile support

* Fix test run

* Move GPU tests
2017-09-08 09:57:16 +12:00
Rory Mitchell
ef23e424f1 [GPU-Plugin] Add GPU accelerated prediction (#2593)
* [GPU-Plugin] Add GPU accelerated prediction

* Improve allocation message

* Update documentation

* Resolve linker error for predictor

* Add unit tests
2017-08-16 12:31:59 +12:00