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1158 Commits

Author SHA1 Message Date
Igor Moura
5e1e972aea
Clean up warnings (#6325) 2020-10-30 23:50:29 +08:00
Sergio Gavilán
b181a88f9f
Reduced some C++ compiler warnings (#6197) 
* Removed some warnings

* Rebase with master

* Solved C++ Google Tests errors made by refactoring in order to remove warnings

* Undo renaming path -> path_

* Fix style check

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-29 12:36:00 -07:00
vcarpani
671971e12e
Compiler warnings (#6286) 
* Fix warnings for json.h

* Fix warnings for metric.h

* Fix warnings for updater_quantile_hist.cc.

* Fix warnings for updater_histmaker.cc.

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-28 13:46:15 -07:00
Jiaming Yuan
c4da967b5c
Support unity build. (#6295) 
* Support unity build.

* Setup on Windows Jenkins.

* Revert "Setup on Windows Jenkins."

This reverts commit 8345cb8d2b009eec8ae9fa6f16412a7c9b6ec12c.
 2020-10-28 11:49:28 -07:00
Jiaming Yuan
3310e208fd
Fix inplace prediction interval. (#6259) 
* Add back the interval in call.
* Make the interval non-optional.
 2020-10-28 13:13:59 +08:00
Jiaming Yuan
cc76724762
Reduce warning. (#6273) 2020-10-27 12:24:19 -07:00
Rory Mitchell
f0c3ff313f
Update GPUTreeShap, add docs (#6281) 
* Update GPUTreeShap, add docs

* Fix test

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-27 18:22:12 +13:00
Jiaming Yuan
b180223d18
Cleanup RABIT. (#6290) 
* Remove recovery and MPI speed tests.
* Remove readme.
* Remove Python binding.
* Add checks in C API.
 2020-10-27 08:48:22 +08:00
Jiaming Yuan
d61b628bf5
Remove RABIT CMake targets. (#6275) 
* Now it's built as part of libxgboost.
* Set correct C API error in RABIT initialization and finalization.
* Remove redundant message.
* Guard the tracker print C API.
 2020-10-27 01:30:20 +08:00
Jiaming Yuan
b5c2a47b20
Drop single point model recovery (#6262) 
* Pass rabit params in JVM package.
* Implement timeout using poll timeout parameter.
* Remove OOB data check.
 2020-10-21 15:27:03 +08:00
Igor Moura
d1254808d5
Clean up C++ warnings (#6213) 2020-10-19 23:02:33 +08:00
Jiaming Yuan
ddf37cca30
Unify thread configuration. (#6186) 2020-10-19 16:05:42 +08:00
Jiaming Yuan
5037abeb86
Fix linear gpu input (#6255) 2020-10-19 12:02:36 +08:00
Jiaming Yuan
bed7ae4083
Loop over thrust::reduce. (#6229) 
* Check input chunk size of dqdm.
* Add doc for current limitation.
 2020-10-14 10:40:56 +13:00
Rory Mitchell
734a911a26
Loop over copy_if (#6201) 
* Loop over copy_if

* Catch OOM.

Co-authored-by: fis <jm.yuan@outlook.com>
 2020-10-14 10:23:16 +13:00
Jiaming Yuan
b05073bda5
[dask] Test for data initializaton. (#6226) 2020-10-13 11:08:35 +08:00
Jiaming Yuan
70c2039748
Catch all standard exceptions in C API. (#6220) 
* `std::bad_alloc` is not guaranteed to be caught.
 2020-10-12 14:01:46 +08:00
Jiaming Yuan
2241563f23
Handle duplicated values in sketching. (#6178) 
* Accumulate weights in duplicated values.
* Fix device id in iterative dmatrix.
 2020-10-10 19:32:44 +08:00
Jiaming Yuan
b5b24354b8
More categorical tests and disable shap sparse test. (#6219) 
* Fix tree load with 32 category.
 2020-10-10 16:12:37 +08:00
Jiaming Yuan
70ce5216b5
Add high level tests for categorical data. (#6179) 
* Fix unique.
 2020-10-09 09:27:23 +08:00
vcarpani
6bc9747df5
Reduce compile warnings (#6198) 
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-08 23:14:59 +08:00
ShvetsKS
a4ce0eae43
CPU predict performance improvement (#6127) 
Co-authored-by: ShvetsKS <kirill.shvets@intel.com>
 2020-10-08 15:50:21 +03:00
Christian Lorentzen
cf4f019ed6
[Breaking] Change default evaluation metric for classification to logloss / mlogloss (#6183) 
* Change DefaultEvalMetric of classification from error to logloss

* Change default binary metric in plugin/example/custom_obj.cc

* Set old error metric in python tests

* Set old error metric in R tests

* Fix missed eval metrics and typos in R tests

* Fix setting eval_metric twice in R tests

* Add warning for empty eval_metric for classification

* Fix Dask tests

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-10-02 12:06:47 -07:00
Jiaming Yuan
f0c63902ff
Use default allocator in sketching. (#6182) 2020-09-30 14:55:59 +08:00
Jiaming Yuan
444131a2e6
Add categorical data support to GPU Hist. (#6164) 2020-09-29 11:27:25 +08:00
Jiaming Yuan
798af22ff4
Add categorical data support to GPU predictor. (#6165) 2020-09-29 11:25:34 +08:00
Jiaming Yuan
52c0b3f100
Fix error message. (#6176) 2020-09-29 11:18:25 +08:00
Rory Mitchell
dda9e1e487
Update GPUTreeshap (#6163) 
* Reduce shap test duration

* Test interoperability with shap package

* Add feature interactions

* Update GPUTreeShap
 2020-09-28 09:43:47 +13:00
Jiaming Yuan
07355599c2
Option for generating device debug info. (#6168) 
* Supply `-G;-src-in-ptx` when `USE_DEVICE_DEBUG` is set and debug mode is selected.
* Refactor CMake script to gather all CUDA configuration.
* Use CMAKE_CUDA_ARCHITECTURES.  Close #6029.
* Add compute 80.  Close #5999
 2020-09-27 03:26:56 +08:00
Philip Hyunsu Cho
72ef553550
Fall back to CUB allocator if RMM memory pool is not set up (#6150) 
* Fall back to CUB allocator if RMM memory pool is not set up

* Fix build

* Prevent memory leak

* Add note about lack of memory initialisation

* Add check for other fast allocators

* Set use_cub_allocator_ to true when RMM is not enabled

* Fix clang-tidy

* Do not demangle symbol; add check to ensure Linux+Clang/GCC combo
 2020-09-24 11:04:50 -07:00
Jiaming Yuan
14afdb4d92
Support categorical data in ellpack. (#6140) 2020-09-24 19:28:57 +08:00
Jiaming Yuan
7065779afa
Improve JSON format for categorical features. (#6128) 
* Gather categories for all nodes.
 2020-09-21 15:35:05 +08:00
Jiaming Yuan
210c131ce7
Support categorical data in GPU sketching. (#6137) 2020-09-21 13:53:06 +08:00
Jiaming Yuan
e319b63f9e
Merge extract cuts into QuantileContainer. (#6125) 
* Use pruning for initial summary construction.
 2020-09-18 16:36:39 +08:00
Jiaming Yuan
5384ed85c8
Use caching allocator from RMM, when RMM is enabled (#6131) 2020-09-17 21:51:49 -07:00
Philip Hyunsu Cho
9e955fb9b0
[R] Check warnings explicitly for model compatibility tests (#6114) 
* [R] Check warnings explicitly for model compatibility tests

* Address reviewer's feedback
 2020-09-15 10:49:48 -07:00
Philip Hyunsu Cho
33577ef5d3
Add MAPE metric (#6119) 2020-09-14 18:45:27 -07:00
Jiaming Yuan
b5f52f0b1b
Validate weights are positive values. (#6115) 2020-09-15 09:03:55 +08:00
Jiaming Yuan
c6f2b8c841
Upgrade gputreeshap. (#6099) 
* Upgrade gputreeshap.

Co-authored-by: Rory Mitchell <r.a.mitchell.nz@gmail.com>
 2020-09-15 12:57:22 +12:00
Philip Hyunsu Cho
d0ccb13d09
Work around a compiler bug in MacOS AppleClang 11 (#6103) 
* Workaround a compiler bug in MacOS AppleClang

* [CI] Run C++ test with MacOS Catalina + AppleClang 11.0.3

* [CI] Migrate cmake_test on MacOS from Travis CI to GitHub Actions

* Install OpenMP runtime

* [CI] Use CMake to locate lz4 lib
 2020-09-09 21:21:55 -07:00
Jiaming Yuan
93e9af43bb
Unify set index data. (#6062) 2020-09-08 11:38:41 +08:00
Jiaming Yuan
e5d40b39cd
[Breaking] Don't save leaf child count in JSON. (#6094) 
The field is deprecated and not used anywhere in XGBoost.
 2020-09-08 11:11:13 +08:00
Jiaming Yuan
5994f3b14c
Don't link imported target. (#6093) 2020-09-07 02:51:09 -07:00
Rory Mitchell
2e907abdb8
Updates to GPUTreeShap (#6087) 
* Extract paths on device

* Update GPUTreeShap
 2020-09-06 13:39:08 +12:00
Rory Mitchell
9bddecee05
Update GPUTreeShap (#6064) 
* Update GPUTreeShap

* Update src/CMakeLists.txt

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-08-27 12:01:53 -07:00
Jiaming Yuan
2fcc4f2886
Unify evaluation functions. (#6037) 2020-08-26 14:23:27 +08:00
Jiaming Yuan
80c8547147
Make binary bin search reusable. (#6058) 
* Move binary search row to hist util.
* Remove dead code.
 2020-08-26 05:05:11 +08:00
Jiaming Yuan
20c95be625
Expand categorical node. (#6028) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-08-25 18:53:57 +08:00
Rory Mitchell
9a4e8b1d81
GPUTreeShap (#6038) 2020-08-25 12:47:41 +12:00
Jiaming Yuan
a144daf034
Limit tree depth for GPU hist. (#6045) 2020-08-22 19:34:52 +08:00