437 Commits

Author SHA1 Message Date
Jiaming Yuan
18cbebaeb9
Unify the cat split storage for CPU. (#7937)
* Unify the cat split storage for CPU.

* Cleanup.

* Workaround.
2022-05-26 04:14:40 -07:00
Jiaming Yuan
606be9e663
Handle missing values in one hot splits. (#7934) 2022-05-24 20:48:41 +08:00
Jiaming Yuan
474366c020
Add convergence test for sparse datasets. (#7922) 2022-05-23 18:07:26 +08:00
Jiaming Yuan
f93a727869
Address remaining mypy errors in python package. (#7914) 2022-05-18 22:46:15 +08:00
Rong Ou
77d4a53c32
use RabitContext intead of init/finalize (#7911) 2022-05-17 12:15:41 +08:00
Jiaming Yuan
db80671d6b
Fix monotone constraint with tuple input. (#7891) 2022-05-13 04:00:03 +08:00
Jiaming Yuan
46e0bce212
Use maximum category in sketch. (#7853) 2022-05-05 19:56:49 +08:00
Jiaming Yuan
fdf533f2b9
[POC] Experimental support for l1 error. (#7812)
Support adaptive tree, a feature supported by both sklearn and lightgbm.  The tree leaf is recomputed based on residue of labels and predictions after construction.

For l1 error, the optimal value is the median (50 percentile).

This is marked as experimental support for the following reasons:
- The value is not well defined for distributed training, where we might have empty leaves for local workers. Right now I just use the original leaf value for computing the average with other workers, which might cause significant errors.
- Some follow-ups are required, for exact, pruner, and optimization for quantile function. Also, we need to calculate the initial estimation.
2022-04-26 21:41:55 +08:00
Jiaming Yuan
332380479b
Avoid warning in np primitive type tests. (#7833) 2022-04-23 02:07:01 +08:00
Jiaming Yuan
c70fa502a5
Expose feature_types to sklearn interface. (#7821) 2022-04-21 20:23:35 +08:00
Jiaming Yuan
52d4eda786
Deprecate use_label_encoder in XGBClassifier. (#7822)
* Deprecate `use_label_encoder` in XGBClassifier.

* We have removed the encoder, now prepare to remove the indicator.
2022-04-21 13:14:02 +08:00
Jiaming Yuan
9150fdbd4d
Support pandas nullable types. (#7760) 2022-03-30 08:51:52 +08:00
Jiaming Yuan
a50b84244e
Cleanup configuration for constraints. (#7758) 2022-03-29 04:22:46 +08:00
Jiaming Yuan
3c9b04460a
Move num_parallel_tree to model parameter. (#7751)
The size of forest should be a property of model itself instead of a training
hyper-parameter.
2022-03-29 02:32:42 +08:00
Jiaming Yuan
8b3ecfca25
Mitigate flaky tests. (#7749)
* Skip non-increasing test with external memory when subsample is used.
* Increase bin numbers for boost from prediction test. This mitigates the effect of
  non-deterministic partitioning.
2022-03-28 21:20:50 +08:00
Jiaming Yuan
4d81c741e9
External memory support for hist (#7531)
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
2022-03-22 00:13:20 +08:00
Xiaochang Wu
613ec36c5a
Support building SimpleDMatrix from Arrow data format (#7512)
* Integrate with Arrow C data API.
* Support Arrow dataset.
* Support Arrow table.

Co-authored-by: Xiaochang Wu <xiaochang.wu@intel.com>
Co-authored-by: Jiaming Yuan <jm.yuan@outlook.com>
Co-authored-by: Zhang Zhang <zhang.zhang@intel.com>
2022-03-15 13:25:19 +08:00
Jiaming Yuan
a62a3d991d
[dask] prediction with categorical data. (#7708) 2022-03-10 00:21:48 +08:00
Cheng Li
a92e0f6240
multi groups in the constraints (#7711) 2022-03-01 18:10:15 +08:00
Jiaming Yuan
83a66b4994
Support categorical data for hist. (#7695)
* Extract partitioner from hist.
* Implement categorical data support by passing the gradient index directly into the partitioner.
* Organize/update document.
* Remove code for negative hessian.
2022-02-25 03:47:14 +08:00
Jiaming Yuan
f08c5dcb06
Cleanup some pylint errors. (#7667)
* Cleanup some pylint errors.

* Cleanup pylint errors in rabit modules.
* Make data iter an abstract class and cleanup private access.
* Cleanup no-self-use for booster.
2022-02-19 18:53:12 +08:00
Jiaming Yuan
7366d3b20c
Ensure models with categorical splits don't use old binary format. (#7666) 2022-02-19 08:05:28 +08:00
Jiaming Yuan
0d0abe1845
Support optimal partitioning for GPU hist. (#7652)
* Implement `MaxCategory` in quantile.
* Implement partition-based split for GPU evaluation.  Currently, it's based on the existing evaluation function.
* Extract an evaluator from GPU Hist to store the needed states.
* Added some CUDA stream/event utilities.
* Update document with references.
* Fixed a bug in approx evaluator where the number of data points is less than the number of categories.
2022-02-15 03:03:12 +08:00
Jiaming Yuan
5cd1f71b51
[dask] Improve configuration for port. (#7645)
- Try port 0 to let the OS return the available port.
- Add port configuration.
2022-02-14 21:34:34 +08:00
Jiaming Yuan
3e693e4f97
[dask] Fix nthread config with dask sklearn wrapper. (#7633) 2022-02-08 06:38:32 +08:00
Philip Hyunsu Cho
c621775f34
Replace all uses of deprecated function sklearn.datasets.load_boston (#7373)
* Replace all uses of deprecated function sklearn.datasets.load_boston

* More renaming

* Fix bad name

* Update assertion

* Fix n boosted rounds.

* Avoid over regularization.

* Rebase.

* Avoid over regularization.

* Whac-a-mole

Co-authored-by: fis <jm.yuan@outlook.com>
2022-01-30 04:27:57 -08:00
Philip Hyunsu Cho
b4340abf56
Add special handling for multi:softmax in sklearn predict (#7607)
* Add special handling for multi:softmax in sklearn predict

* Add test coverage
2022-01-29 15:54:49 -08:00
Jiaming Yuan
24789429fd
Support latest pandas Index type. (#7595) 2022-01-26 18:20:10 +08:00
Jiaming Yuan
ef4dae4c0e
[dask] Add scheduler address to dask config. (#7581)
- Add user configuration.
- Bring back to the logic of using scheduler address from dask.  This was removed when we were trying to support GKE, now we bring it back and let xgboost try it if direct guess or host IP from user config failed.
2022-01-22 01:56:32 +08:00
Jiaming Yuan
5ddd4a9d06
Small cleanup to tests. (#7585)
* Use random port in dask tests to avoid warnings for occupied port.
* Increase the difficulty of AUC tests.
2022-01-21 06:26:57 +00:00
Jiaming Yuan
dac9eb13bd
Implement new save_raw in Python. (#7572)
* Expose the new C API function to Python.
* Remove old document and helper script.
* Small optimization to the `save_raw` and Json ctors.
2022-01-19 02:27:51 +08:00
Jiaming Yuan
cc06fab9a7
Support distributed CPU env for categorical data. (#7575)
* Add support for cat data in sketch allreduce.
* Share tests between CPU and GPU.
2022-01-18 21:56:07 +08:00
Jiaming Yuan
deab0e32ba
Validate out of range categorical value. (#7576)
* Use float in CPU categorical set to preserve the input value.
* Check out of range values.
2022-01-18 20:16:19 +08:00
Jiaming Yuan
d6ea5cc1ed
Cover approx tree method for categorical data tests. (#7569)
* Add tree to df tests.
* Add plotting tests.
* Add histogram tests.
2022-01-16 11:31:40 +08:00
Jiaming Yuan
a1bcd33a3b
[breaking] Change internal model serialization to UBJSON. (#7556)
* Use typed array for models.
* Change the memory snapshot format.
* Add new C API for saving to raw format.
2022-01-16 02:11:53 +08:00
Jiaming Yuan
13b0fa4b97
Implement get_group. (#7564) 2022-01-16 02:07:42 +08:00
Philip Hyunsu Cho
20c0d60ac7
Restore functionality of max_depth=0 in hist (#7551)
* Restore functionality of max_depth=0 in hist

* Add test case
2022-01-11 01:37:44 +08:00
Jiaming Yuan
001503186c
Rewrite approx (#7214)
This PR rewrites the approx tree method to use codebase from hist for better performance and code sharing.

The rewrite has many benefits:
- Support for both `max_leaves` and `max_depth`.
- Support for `grow_policy`.
- Support for mono constraint.
- Support for feature weights.
- Support for easier bin configuration (`max_bin`).
- Support for categorical data.
- Faster performance for most of the datasets. (many times faster)
- Support for prediction cache.
- Significantly better performance for external memory.
- Unites the code base between approx and hist.
2022-01-10 21:15:05 +08:00
Jiaming Yuan
0df2ae63c7
Fix num_boosted_rounds for linear model. (#7538)
* Add note.

* Fix n boosted rounds.
2022-01-05 03:29:33 +08:00
Jiaming Yuan
eb1efb54b5
Define feature_names_in_. (#7526)
* Define `feature_names_in_`.
* Raise attribute error if it's not defined.
2022-01-05 01:35:34 +08:00
Jiaming Yuan
8f0a42a266
Initial support for multi-label classification. (#7521)
* Add support in sklearn classifier.
2022-01-04 23:58:21 +08:00
Ginko Balboa
29bfa94bb6
Fix external memory with gpu_hist and subsampling combination bug. (#7481)
Instead of accessing data from the `original_page_`, access the data from the first page of the available batch.

fix #7476

Co-authored-by: jiamingy <jm.yuan@outlook.com>
2021-12-24 11:15:35 +08:00
Xiaochang Wu
59bd1ab17e
Skip callback demo test if matplotlib is not installed (#7520) 2021-12-19 08:20:38 +08:00
Jiaming Yuan
58a6723eb1
Initial support for multioutput regression. (#7514)
* Add num target model parameter, which is configured from input labels.
* Change elementwise metric and indexing for weights.
* Add demo.
* Add tests.
2021-12-18 09:28:38 +08:00
Jiaming Yuan
5b1161bb64
Convert labels into tensor. (#7456)
* Add a new ctor to tensor for `initilizer_list`.
* Change labels from host device vector to tensor.
* Rename the field from `labels_` to `labels` since it's a public member.
2021-12-17 00:58:35 +08:00
Jiaming Yuan
70b12d898a
[dask] Fix ddqdm with empty partition. (#7510)
* Fix empty partition.

* war.
2021-12-16 20:37:29 +08:00
Jiaming Yuan
05497a9141
[dask] Fix asyncio. (#7508) 2021-12-13 01:48:25 +08:00
Jiaming Yuan
b124a27f57
Support scipy sparse in dask. (#7457) 2021-11-23 16:45:36 +08:00
Jiaming Yuan
d33854af1b
[Breaking] Accept multi-dim meta info. (#7405)
This PR changes base_margin into a 3-dim array, with one of them being reserved for multi-target classification. Also, a breaking change is made for binary serialization due to extra dimension along with a fix for saving the feature weights. Lastly, it unifies the prediction initialization between CPU and GPU. After this PR, the meta info setter in Python will be based on array interface.
2021-11-18 23:02:54 +08:00
Jiaming Yuan
8cc75f1576
Cleanup Python tests. (#7426) 2021-11-14 15:47:05 +08:00