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Author SHA1 Message Date
hzy001
c2ba4fb957
Fix broken links. (#6455) 
Co-authored-by: Hao Ziyu <haoziyu@qiyi.com>
Co-authored-by: fis <jm.yuan@outlook.com>
 2020-12-02 17:39:12 +08:00
Jiaming Yuan
927c316aeb
Fix period in evaluation monitor. (#6441) 2020-11-29 03:18:33 +08:00
Jiaming Yuan
f4ff1c53fd
Fix CLI ranking demo. (#6439) 
Save model at final round.
 2020-11-29 03:12:06 +08:00
Honza Sterba
b0036b339b
Optionaly fail when gpu_id is set to invalid value (#6342) 2020-11-28 15:14:12 +08:00
ShvetsKS
956beead70
Thread local memory allocation for BuildHist (#6358) 
* thread mem locality

* fix apply

* cleanup

* fix lint

* fix tests

* simple try

* fix

* fix

* apply comments

* fix comments

* fix

* apply simple comment

Co-authored-by: ShvetsKS <kirill.shvets@intel.com>
 2020-11-25 17:50:12 +03:00
Philip Hyunsu Cho
4dbbeb635d
[CI] Upgrade cuDF and RMM to 0.17 nightlies (#6434) 2020-11-24 13:21:41 -08:00
Philip Hyunsu Cho
0c85b90671
[R] Fix R package installation via CMake (#6423) 2020-11-22 05:49:09 -08:00
Jiaming Yuan
42d31d9dcb
Fix MPI build. (#6403) 2020-11-21 13:38:21 +08:00
Jiaming Yuan
2ce2a1a4d8
[SKL] Propagate parameters to booster during set_param. (#6416) 2020-11-20 20:37:35 +08:00
zhang_jf
cc581b3b6b
Misleading exception information: no such param of "allow_non_zero_missing" (#6418) 2020-11-20 19:33:34 +08:00
Jiaming Yuan
00218d065a
[dask] Update document. [skip ci] (#6413) 2020-11-20 19:16:19 +08:00
Jiaming Yuan
c120822a24
Fix flaky sparse page dmatrix test. (#6417) 2020-11-20 19:15:45 +08:00
Jiaming Yuan
a7b42adb74
Fix dask predict (#6412) 2020-11-20 10:10:52 +08:00
Jiaming Yuan
44a9d69efb
Small cleanup to evaluator. (#6400) 2020-11-20 09:33:51 +08:00
Philip Hyunsu Cho
9c9070aea2
Use pytest conventions consistently (#6337) 
* Do not derive from unittest.TestCase (not needed for pytest)

* assertRaises -> pytest.raises

* Simplify test_empty_dmatrix with test parametrization

* setUpClass -> setup_class, tearDownClass -> teardown_class

* Don't import unittest; import pytest

* Use plain assert

* Use parametrized tests in more places

* Fix test_gpu_with_sklearn.py

* Put back run_empty_dmatrix_reg / run_empty_dmatrix_cls

* Fix test_eta_decay_gpu_hist

* Add parametrized tests for monotone constraints

* Fix test names

* Remove test parametrization

* Revise test_slice to be not flaky
 2020-11-19 17:00:15 -08:00
Philip Hyunsu Cho
c763b50dd0
[CI] Upgrade to MacOS Mojave image (#6406) 2020-11-18 20:29:10 -08:00
Nan Zhu
4d1d5d4010
[jvm-packages] fix potential unit test suites aborted issue (#6373) 
* fix race conditio

* code cleaning

rm pom.xml-e

* clean again

* fix compilation issue

* recover

* avoid using getOrCreate

* interrupt zombie threads

* safe guard

* fix deadlock

* Update SparkParallelismTracker.scala
 2020-11-17 10:59:26 -08:00
Philip Hyunsu Cho
e426b6e040
[R] Do not convert continuous labels to factors (#6380) 
* [R] Do not convert continuous labels to factors

* Address reviewer's comment
 2020-11-17 09:19:16 -08:00
James Lamb
3cca1c5fa1
[R] remove uses of exists() (#6387) 2020-11-17 15:06:23 +08:00
Jiaming Yuan
3ac173fc8b
Fix typo. (#6399) 2020-11-16 16:59:12 -08:00
Nikhil Choudhary
ae1662028a
Fixed few grammatical mistakes in doc (#6393) 2020-11-15 13:48:08 +08:00
Philip Hyunsu Cho
5cb24d0d39
Fix broken link in CLI doc (#6396) 2020-11-14 17:58:07 -08:00
ShvetsKS
512b464cfa
Disable HT for DMatrix creation (#6386) 
Co-authored-by: SHVETS, KIRILL <kirill.shvets@intel.com>
 2020-11-14 22:18:33 +08:00
Jiaming Yuan
fcd6fad822
[dask] Small cleanup. (#6391) 2020-11-14 22:15:05 +08:00
Jiaming Yuan
4ccf92ea34
[dask] Fix union of workers. (#6375) 2020-11-13 16:55:05 +08:00
Jiaming Yuan
fcfeb4959c
Deprecate positional arguments. (#6365) 
Deprecate positional arguments in following functions:

- `__init__` for all classes in sklearn module.
- `fit` method for all classes in sklearn module.
- dask interface.
- `set_info` for `DMatrix` class.

Refactor the evaluation matrices handling.
 2020-11-13 11:10:30 +08:00
Philip Hyunsu Cho
e5193c21a1
[dask] Allow empty data matrix in AFT survival (#6379) 
* [dask] Allow empty data matrix in AFT survival

* Add unit test
 2020-11-12 17:49:58 -08:00
Philip Hyunsu Cho
5a33c2f3a0
[CI] Add noLD R test (#6382) 
* [CI] Add noLD test

* Make noLD test only trigger with a PR comment

* [CI] Don't install stringi

* Add the Titanic example as a unit test

* Document trigger

* add to index

* Clarify that it needs to be a review comment
 2020-11-12 12:41:25 -08:00
Jiaming Yuan
c1a62b5fa2
Expect gpu external memory to fail. (#6381) 2020-11-12 19:24:48 +08:00
Jiaming Yuan
c90f968d92
Update Python documents. (#6376) 2020-11-12 17:51:32 +08:00
Philip Hyunsu Cho
c5645180a6
[R] Fix a crash that occurs with noLD R (#6378) 2020-11-11 21:09:08 -08:00
James Lamb
12d27f43ff
[doc] make Dask distributed example copy-pastable (#6345) 2020-11-11 20:22:17 -08:00
Jiaming Yuan
d711d648cb
Fix label errors in graph visualization (#6369) 2020-11-11 17:44:59 -08:00
Jiaming Yuan
debeae2509
[R] Fix warnings from R check --as-cran (#6374) 
* Remove exit and printf.

* Fix warnings.
 2020-11-11 18:39:37 +08:00
Jiaming Yuan
6e12c2a6f8
[dask] Supoort running on GKE. (#6343) 
* Avoid accessing `scheduler_info()['workers']`.
* Avoid calling `client.gather` inside task.
* Avoid using `client.scheduler_address`.
 2020-11-11 18:04:34 +08:00
Jiaming Yuan
8a17610666
Implement GPU predict leaf. (#6187) 2020-11-11 17:33:47 +08:00
Philip Hyunsu Cho
7f101d1b33
[CI] Remove R check from Jenkins (#6372) 
* Remove R check from Jenkins

* Print stacktrace when CRAN test fail in GitHub Actions

* Add verbose flag in tests/ci_build/print_r_stacktrace.sh

* Fix path in tests/ci_build/print_r_stacktrace.sh
 2020-11-10 22:46:54 -08:00
Jiaming Yuan
a5cfa7841e
Run R check as cran on action. [skip ci] (#6371) 
Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-11-11 12:02:53 +08:00
Jiaming Yuan
43efadea2e
Deterministic data partitioning for external memory (#6317) 
* Make external memory data partitioning deterministic.

* Change the meaning of `page_size` from bytes to number of rows.

* Design a data pool.

* Note for external memory.

* Enable unity build on Windows CI.

* Force garbage collect on test.
 2020-11-11 06:11:06 +08:00
Jean Lescut-Muller
9564886d9f
Update custom_metric_obj.rst (#6367) 2020-11-10 22:29:22 +08:00
Jiaming Yuan
e65e3cf36e
Support shared library in system path. (#6362) 2020-11-10 16:04:25 +08:00
Jiaming Yuan
184e2eac7d
Add period to evaluation monitor. (#6348) 2020-11-10 07:47:48 +08:00
ShvetsKS
d411f98d26
simple fix for static shedule in predict (#6357) 
Co-authored-by: ShvetsKS <kirill.shvets@intel.com>
 2020-11-09 17:01:30 +08:00
Jiaming Yuan
519cee115a
Avoid resetting seed for every configuration. (#6349) 2020-11-06 10:28:35 +08:00
James Lamb
f3a4253984
Ignore files from local Dask development (#6346) 2020-11-05 13:54:46 +08:00
Jack Dunn
51e6531315
Fix missing space in warning message (#6340) 2020-11-04 06:03:16 -05:00
Jiaming Yuan
2cc9662005
Support slicing tree model (#6302) 
This PR is meant the end the confusion around best_ntree_limit and unify model slicing. We have multi-class and random forests, asking users to understand how to set ntree_limit is difficult and error prone.

* Implement the save_best option in early stopping.

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2020-11-02 23:27:39 -08:00
Rory Mitchell
29745c6df2
Fix inclusive scan for large sizes (#6234) 2020-11-03 17:01:43 +13:00
Jiaming Yuan
7756192906
[dask] Fix prediction on DaskDMatrix with multiple meta data. (#6333) 
* Unify the meta handling methods.
 2020-11-02 19:18:44 -05:00
Jiaming Yuan
5a7b3592ed
Optional find_package for sanitizers. (#6329) 2020-11-02 19:17:17 -05:00