93 Commits

Author SHA1 Message Date
James Lamb
894e9bc5d4
[R-package] remove dependency on {magrittr} (#6928)
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2021-05-13 04:34:59 +08:00
James Lamb
20f34d9776
[R-package] Update dependencies from CMake-based installation (#6906)
* remove stringi
* add Matrix and jsonlite
2021-04-29 01:32:01 +08:00
Philip Hyunsu Cho
0c85b90671
[R] Fix R package installation via CMake (#6423) 2020-11-22 05:49:09 -08:00
Rory Mitchell
29745c6df2
Fix inclusive scan for large sizes (#6234) 2020-11-03 17:01:43 +13:00
Jiaming Yuan
5a7b3592ed
Optional find_package for sanitizers. (#6329) 2020-11-02 19:17:17 -05:00
Tanuja Kirthi Doddapaneni
d261ba029a
Added USE_NCCL_LIB_PATH option to enable user to set NCCL_LIBRARY during build (#6310)
Description: To enable user to set NCCL_LIBRARY during build
2020-10-28 14:36:31 -07:00
Jiaming Yuan
07355599c2
Option for generating device debug info. (#6168)
* Supply `-G;-src-in-ptx` when `USE_DEVICE_DEBUG` is set and debug mode is selected.
* Refactor CMake script to gather all CUDA configuration.
* Use CMAKE_CUDA_ARCHITECTURES.  Close #6029.
* Add compute 80.  Close #5999
2020-09-27 03:26:56 +08:00
Philip Hyunsu Cho
2c4dedb7a0
[CI] Test C API demo (#6159)
* Fix CMake install config to use dependencies

* [CI] Test C API demo

* Explicitly cast num_feature, to avoid warning in Linux
2020-09-25 14:49:01 -07:00
Jiaming Yuan
9b688aca3b
Fix mingw build with R. (#5918) 2020-07-22 02:56:49 +08:00
James Lamb
d39da42e69
[R] Remove dependency on gendef for Visual Studio builds (fixes #5608) (#5764)
* [R-package] Remove dependency on gendef for Visual Studio builds (fixes #5608)

* clarify docs

* removed debugging print statement

* Make R CMake install more robust

* Fix doc format; add ToC

* Update build.rst

* Fix AppVeyor

Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-06-15 00:20:44 +00:00
Peter Jung
0be0e6fd88
Add pkgconfig to cmake (#5744)
* Add pkgconfig to cmake

* Move xgboost.pc.in to cmake/

Co-authored-by: Peter Jung <peter.jung@heureka.cz>
Co-authored-by: Hyunsu Cho <chohyu01@cs.washington.edu>
2020-06-01 18:22:33 -07:00
Jiaming Yuan
eaf2a00b5c
Enhance nvtx support. (#5636) 2020-05-06 22:54:24 +08:00
James Lamb
7f980e9f83
[R-package] fixed inconsistency in R -e calls in FindLibR.cmake (#5438) 2020-03-28 19:24:21 +08:00
James Lamb
3cf665d3ec
[R-package] changed FindLibR to take advantage of CMake cache (#5427) 2020-03-20 03:32:15 +08:00
Darby Payne
7a99f8f27f
Adding static library option (#5397) 2020-03-10 18:22:15 +08:00
Philip Hyunsu Cho
2a071cebc5 Add CMake option to run Undefined Behavior Sanitizer (UBSan) (#5211)
* Fix related errors.
2020-01-20 16:57:44 +08:00
Rory Mitchell
5aa007d7b2
Fix visual studio output library directories (#5119) 2019-12-15 15:08:20 +13:00
Jiaming Yuan
e089e16e3d
Pass pointer to model parameters. (#5101)
* Pass pointer to model parameters.

This PR de-duplicates most of the model parameters except the one in
`tree_model.h`.  One difficulty is `base_score` is a model property but can be
changed at runtime by objective function.  Hence when performing model IO, we
need to save the one provided by users, instead of the one transformed by
objective.  Here we created an immutable version of `LearnerModelParam` that
represents the value of model parameter after configuration.
2019-12-10 12:11:22 +08:00
Jiaming Yuan
7663de956c
Run training with empty DMatrix. (#4990)
This makes GPU Hist robust in distributed environment as some workers might not
be associated with any data in either training or evaluation.

* Disable rabit mock test for now: See #5012 .

* Disable dask-cudf test at prediction for now: See #5003

* Launch dask job for all workers despite they might not have any data.
* Check 0 rows in elementwise evaluation metrics.

   Using AUC and AUC-PR still throws an error.  See #4663 for a robust fix.

* Add tests for edge cases.
* Add `LaunchKernel` wrapper handling zero sized grid.
* Move some parts of allreducer into a cu file.
* Don't validate feature names when the booster is empty.

* Sync number of columns in DMatrix.

  As num_feature is required to be the same across all workers in data split
  mode.

* Filtering in dask interface now by default syncs all booster that's not
empty, instead of using rank 0.

* Fix Jenkins' GPU tests.

* Install dask-cuda from source in Jenkins' test.

  Now all tests are actually running.

* Restore GPU Hist tree synchronization test.

* Check UUID of running devices.

  The check is only performed on CUDA version >= 10.x, as 9.x doesn't have UUID field.

* Fix CMake policy and project variables.

  Use xgboost_SOURCE_DIR uniformly, add policy for CMake >= 3.13.

* Fix copying data to CPU

* Fix race condition in cpu predictor.

* Fix duplicated DMatrix construction.

* Don't download extra nccl in CI script.
2019-11-06 16:13:13 +08:00
Jiaming Yuan
6fac40cfb4
Add asan.so.5 to cmake script. (#4999) 2019-10-30 16:03:23 -04:00
Jiaming Yuan
f24be2efb4 Use configure_file() to configure version only (#4974)
* Avoid writing build_config.h

* Remove build_config.h all together.

* Lint.
2019-10-22 23:47:00 -07:00
Jiaming Yuan
5620322a48
[Breaking] Add global versioning. (#4936)
* Use CMake config file for representing version.

* Generate c and Python version file with CMake.

The generated file is written into source tree.  But unless XGBoost upgrades
its version, there will be no actual modification.  This retains compatibility
with Makefiles for R.

* Add XGBoost version the DMatrix binaries.
* Simplify prefetch detection in CMakeLists.txt
2019-10-22 23:27:26 -04:00
Philip Hyunsu Cho
c6f2a7e186
[CI] Add Windows GPU to Jenkins CI pipeline (#4463)
* Fix #4462: Use /MT flag consistently for MSVC target

* First attempt at Windows CI

* Distinguish stages in Linux and Windows pipelines

* Try running CMake in Windows pipeline

* Add build step
2019-05-14 04:45:06 +00:00
Rory Mitchell
d16d9a9988
Correctly determine cuda version (#4453) 2019-05-10 19:46:57 +12:00
Jiaming Yuan
8da4907e89
Enable building with shared NCCL. (#4447)
* Add `BUILD_WITH_SHARED_NCCL` to CMake.
2019-05-09 23:19:58 +08:00
Jiaming Yuan
207f058711 Refactor CMake scripts. (#4323)
* Refactor CMake scripts.

* Remove CMake CUDA wrapper.
* Bump CMake version for CUDA.
* Use CMake to handle Doxygen.
* Split up CMakeList.
* Export install target.
* Use modern CMake.
* Remove build.sh
* Workaround for gpu_hist test.
* Use cmake 3.12.

* Revert machine.conf.

* Move CLI test to gpu.

* Small cleanup.

* Support using XGBoost as submodule.

* Fix windows

* Fix cpp tests on Windows

* Remove duplicated find_package.
2019-04-15 10:08:12 -07:00
Rong Ou
9837b09b20 support cuda 10.1 (#4223)
* support cuda 10.1

* add cuda 10.1 to jenkins build matrix
2019-03-08 12:22:12 +13:00
Jiaming Yuan
2e618af743
Fix cpplint. (#4157)
* Add comment after #endif.
* Add missing headers.
2019-02-18 00:16:29 +08:00
Egor Smirnov
5f151c5cf3 Performance optimizations for Intel CPUs (#3957)
* Initial performance optimizations for xgboost

* remove includes

* revert float->double

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* fix for CI

* Check existence of _mm_prefetch and __builtin_prefetch

* Fix lint
2019-01-08 21:08:13 -08:00
trivialfis
cf2d86a4f6 Add travis sanitizers tests. (#3557)
* Add travis sanitizers tests.

* Add gcc-7 in Travis.
* Add SANITIZER_PATH for CMake.
* Enable sanitizer tests in Travis.

* Fix memory leaks in tests.

* Fix all memory leaks reported by Address Sanitizer.
* tests/cpp/helpers.h/CreateDMatrix now returns raw pointer.
2018-08-19 16:40:30 +12:00
trivialfis
55caad6e49 Remove redundant FindGTest.cmake. (#3533)
During removal of FindGTest.cmake, also

* Fix gtest include dirs.
* Remove some blanks and use PWD for gtest dir.
2018-08-07 10:08:08 +12:00
trivialfis
860263f814 Enable building with sanitizers. (#3525) 2018-07-31 17:25:47 +12:00
Thejaswi
2200939416 Upgrading to NCCL2 (#3404)
* Upgrading to NCCL2

* Part - II of NCCL2 upgradation

 - Doc updates to build with nccl2
 - Dockerfile.gpu update for a correct CI build with nccl2
 - Updated FindNccl package to have env-var NCCL_ROOT to take precedence

* Upgrading to v9.2 for CI workflow, since it has the nccl2 binaries available

* Added NCCL2 license + copy the nccl binaries into /usr location for the FindNccl module to find

* Set LD_LIBRARY_PATH variable to pick nccl2 binary at runtime

* Need the nccl2 library download instructions inside Dockerfile.release as well

* Use NCCL2 as a static library
2018-07-10 00:42:15 -07:00
Rory Mitchell
3ee725e3bb
Add cuda forwards compatibility (#3316) 2018-05-17 10:59:22 +12:00
Vadim Khotilovich
9ffe8596f2
[core] fix slow predict-caching with many classes (#3109)
* fix prediction caching inefficiency for multiclass

* silence some warnings

* redundant if

* workaround for R v3.4.3 bug; fixes #3081
2018-02-15 18:31:42 -06:00
Vadim Khotilovich
76f8f51438
[R] AppVeyor CI for R package (#2954)
* [R] fix finding R.exe with cmake on WIN when it is in PATH

* [R] appveyor config for R package

* [R] wrap the lines to make R check happier

* [R] install only binary dep-packages in appveyor

* [R] for MSVC appveyor, also build a binary for R package and keep as an artifact
2017-12-17 16:37:45 -06:00
Vadim Khotilovich
e8a6597957 [R] maintenance Nov 2017; SHAP plots (#2888)
* [R] fix predict contributions for data with no colnames

* [R] add a render parameter for xgb.plot.multi.trees; fixes #2628

* [R] update Rd's

* [R] remove unnecessary dep-package from R cmake install

* silence type warnings; readability

* [R] silence complaint about incomplete line at the end

* [R] initial version of xgb.plot.shap()

* [R] more work on xgb.plot.shap

* [R] enforce black font in xgb.plot.tree; fixes #2640

* [R] if feature names are available, check in predict that they are the same; fixes #2857

* [R] cran check and lint fixes

* remove tabs

* [R] add references; a test for plot.shap
2017-12-05 09:45:34 -08:00
Rory Mitchell
24f527a1c0
AVX gradients (#2878)
* AVX gradients

* Add google test for AVX

* Create fallback implementation, remove fma instruction

* Improved accuracy of AVX exp function
2017-11-27 08:56:01 +13:00
Vadim Khotilovich
74db9757b3 [R package] GPU support (#2732)
* [R] MSVC compatibility

* [GPU] allow seed in BernoulliRng up to size_t and scale to uint32_t

* R package build with cmake and CUDA

* R package CUDA build fixes and cleanups

* always export the R package native initialization routine on windows

* update the install instructions doc

* fix lint

* use static_cast directly to set BernoulliRng seed

* [R] demo for GPU accelerated algorithm

* tidy up the R package cmake stuff

* R pack cmake: installs main dependency packages if needed

* [R] version bump in DESCRIPTION

* update NEWS

* added short missing/sparse values explanations to FAQ
2017-09-28 18:15:28 -05:00
Rory Mitchell
530f01e21c [GPU-Plugin] Add load balancing search to gpu_hist. Add compressed iterator. (#2504) 2017-07-11 22:36:39 +12:00
Rory Mitchell
e939192978 Cmake improvements (#2487)
* Cmake improvements
* Add google test to cmake
2017-07-06 18:05:11 +12:00
Rory Mitchell
48f3003302 [GPU-Plugin] Change GPU plugin to use tree_method parameter, bump cmake version to 3.5 for GPU plugin, add compute architecture 3.5, remove unused cmake files (#2455) 2017-06-29 16:19:45 +12:00
PSEUDOTENSOR / Jonathan McKinney
41efe32aa5 [GPU-Plugin] Multi-GPU for grow_gpu_hist histogram method using NVIDIA NCCL. (#2395) 2017-06-12 05:06:08 +12:00