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Author SHA1 Message Date
Jiaming Yuan
d54ef56f6f
Fix cache with gc (#8851) 
- Make DMatrixCache thread-safe.
- Remove the use of thread-local memory.
 2023-03-01 00:39:06 +08:00
Rong Ou
d9688f93c7
Support column-split in row partitioner (#8828) 2023-02-26 04:43:35 +08:00
Mauro Leggieri
90c0633a28
Fixes compilation errors on MSVC x86 targets (#8823) 2023-02-26 03:20:28 +08:00
Rong Ou
a65ad0bd9c
Support column split in histogram builder (#8811) 2023-02-17 22:37:01 +08:00
dependabot[bot]
40fd3d6d5f
Bump maven-javadoc-plugin in /jvm-packages/xgboost4j-gpu (#8815) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-3.4.1...maven-javadoc-plugin-3.5.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-javadoc-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-02-17 16:39:16 +08:00
dependabot[bot]
6ce9a35f55
Bump maven-javadoc-plugin from 3.4.1 to 3.5.0 in /jvm-packages/xgboost4j (#8813) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-3.4.1...maven-javadoc-plugin-3.5.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-javadoc-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-02-17 15:04:06 +08:00
dependabot[bot]
d62daa0b32
Bump maven-javadoc-plugin from 3.4.1 to 3.5.0 in /jvm-packages (#8814) 
Bumps [maven-javadoc-plugin](https://github.com/apache/maven-javadoc-plugin) from 3.4.1 to 3.5.0.
- [Release notes](https://github.com/apache/maven-javadoc-plugin/releases)
- [Commits](https://github.com/apache/maven-javadoc-plugin/compare/maven-javadoc-plugin-3.4.1...maven-javadoc-plugin-3.5.0)

---
updated-dependencies:
- dependency-name: org.apache.maven.plugins:maven-javadoc-plugin
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-02-16 23:16:11 +08:00
Jiaming Yuan
c0afdb6786
Fix CPU bin compression with categorical data. (#8809) 
* Fix CPU bin compression with categorical data.

* The bug causes the maximum category to be lesser than 256 or the maximum number of bins when
the input data is dense.
 2023-02-16 04:20:34 +08:00
Jiaming Yuan
cce4af4acf
Initial support for quantile loss. (#8750) 
- Add support for Python.
- Add objective.
 2023-02-16 02:30:18 +08:00
Jiaming Yuan
282b1729da
Specify the number of threads for parallel sort. (#8735) 
* Specify the number of threads for parallel sort.

- Pass context object into argsort.
- Replace macros with inline functions.
 2023-02-16 00:20:19 +08:00
Jiaming Yuan
c7c485d052
Extract fit intercept. (#8793) 2023-02-15 22:41:31 +08:00
Jiaming Yuan
594371e35b
Fix CPP lint. (#8807) 2023-02-15 20:16:35 +08:00
Jiaming Yuan
e62167937b
[CI] Update action cache for jvm tests. (#8806) 2023-02-15 18:43:48 +08:00
Rong Ou
74572b5d45
Add convenience method for allgather (#8804) 2023-02-15 11:37:11 +08:00
WeichenXu
f27a7258c6
Fix feature types param (#8772) 
Signed-off-by: Weichen Xu <weichen.xu@databricks.com>
 2023-02-14 02:16:42 +08:00
Jiaming Yuan
52d0230b58
Fix merge conflict. (#8791) 2023-02-13 23:43:42 +08:00
Jiaming Yuan
81b2ee1153
Pass DMatrix into metric for caching. (#8790) 2023-02-13 22:15:05 +08:00
Jiaming Yuan
31d3ec07af
Extract device algorithms. (#8789) 2023-02-13 20:53:53 +08:00
Jiaming Yuan
457f704e3d
Add quantile metric. (#8761) 2023-02-13 19:07:40 +08:00
Jiaming Yuan
d11a0044cf
Generalize prediction cache. (#8783) 
* Extract most of the functionality into `DMatrixCache`.
* Move API entry to independent file to reduce dependency on `predictor.h` file.
* Add test.

---------

Co-authored-by: Philip Hyunsu Cho <chohyu01@cs.washington.edu>
 2023-02-13 12:36:43 +08:00
Rong Ou
ed91e775ec
Fix quantile tests running on multi-gpus (#8775) 
* Fix quantile tests running on multi-gpus

* Run some gtests with multiple GPUs

* fix mgpu test naming

* Instruct NCCL to print extra logs

* Allocate extra space in /dev/shm to enable NCCL

* use gtest_skip to skip mgpu tests

---------

Co-authored-by: Hyunsu Philip Cho <chohyu01@cs.washington.edu>
 2023-02-12 17:00:26 -08:00
Jiaming Yuan
225b3158f6
Support custom metric in sklearn ranker. (#8786) 2023-02-12 13:14:07 +08:00
Jiaming Yuan
17b709acb9
Rename ranking utils to threading utils. (#8785) 2023-02-12 05:41:18 +08:00
Jiaming Yuan
70c9b885ef
Extract floating point rounding routines. (#8771) 2023-02-12 04:26:41 +08:00
Jiaming Yuan
e9c178f402
[doc] Document update [skip ci] (#8784) 
- Remove version specifics in cat demo.
- Remove aws yarn.
- Update faq.
- Stop mentioning MPI.
- Update sphinx inventory links.
- Fix typo.
 2023-02-12 04:25:22 +08:00
Jiaming Yuan
8a16944664
Fix ranking with quantile dmatrix and group weight. (#8762) 2023-02-10 20:32:35 +08:00
Dai-Jie (Jay) Wu
ad0ccc6e4f
[doc] fix inconsistent doc and minor typo for external memory (#8773) 2023-02-10 01:05:34 +08:00
Jiaming Yuan
199c421d60
Send default configuration from metric to objective. (#8760) 2023-02-09 20:18:07 +08:00
Jiaming Yuan
5f76edd296
Extract make metric name from ranking metric. (#8768) 
- Extract the metric parsing routine from ranking.
- Add a test.
- Accept null for string view.
 2023-02-09 18:30:21 +08:00
Jiaming Yuan
4ead65a28c
Increase timeout limit for linear. (#8767) 2023-02-09 18:20:12 +08:00
Rong Ou
cbf98cb9c6
Add Allgather to collective communicator (#8765) 
* Add Allgather to collective communicator
 2023-02-09 11:31:22 +08:00
Jiaming Yuan
48cefa012e
Support multiple alphas for segmented quantile. (#8758) 2023-02-07 17:17:59 +08:00
Jiaming Yuan
c4802bfcd0
Cleanup booster param types. (#8756) 2023-02-07 15:52:19 +08:00
Jiaming Yuan
7b3d473593
[doc] Add demo for inference using individual tree. (#8752) 2023-02-07 04:40:18 +08:00
Jiaming Yuan
28bb01aa22
Extract optional weight. (#8747) 
- Extract optional weight from coommon.h to reduce dependency on this header.
- Add test.
 2023-02-07 03:11:53 +08:00
Jiaming Yuan
0f37a01dd9
Require black formatter for the python package. (#8748) 2023-02-07 01:53:33 +08:00
Jiaming Yuan
a2e433a089
Fix empty DMatrix with categorical features. (#8739) 2023-02-07 00:40:11 +08:00
Rory Mitchell
7214a45e83
Fix different number of features in gpu_hist evaluator. (#8754) 2023-02-06 23:15:16 +08:00
Rong Ou
66191e9926
Support cpu quantile sketch with column-wise data split (#8742) 2023-02-05 14:26:24 +08:00
Jiaming Yuan
c1786849e3
Use array interface for CSC matrix. (#8672) 
* Use array interface for CSC matrix.

Use array interface for CSC matrix and align the interface with CSR and dense.

- Fix nthread issue in the R package DMatrix.
- Unify the behavior of handling `missing` with other inputs.
- Unify the behavior of handling `missing` around R, Python, Java, and Scala DMatrix.
- Expose `num_non_missing` to the JVM interface.
- Deprecate old CSR and CSC constructors.
 2023-02-05 01:59:46 +08:00
BenEfrati
213b5602d9
Add sample_weight to eval_metric (#8706) 2023-02-05 00:06:38 +08:00
Philip Hyunsu Cho
dd79ab846f
[CI] Fix failing arm build (#8751) 
* Always install Conda env into /opt/python; use Mamba

* Change ownership of Conda env to buildkite-agent user

* Use unique name

* Fix
 2023-02-03 22:32:48 -08:00
Jiaming Yuan
0e61ba57d6
Fix GPU L1 error. (#8749) 2023-02-04 03:02:00 +08:00
Hamel Husain
16ef016ba7
[CI] Use bash -l {0} as the default in GitHub Actions (#8741) 2023-01-31 15:00:29 +08:00
James Lamb
0d8248ddcd
[R] discourage use of regex for fixed string comparisons (#8736) 2023-01-30 18:47:21 +08:00
Jiaming Yuan
1325ba9251
Support primitive types of pyarrow-backed pandas dataframe. (#8653) 
Categorical data (dictionary) is not supported at the moment.
 2023-01-30 17:53:29 +08:00
Jiaming Yuan
3760cede0f
Consistent use of context to specify number of threads. (#8733) 
- Use context in all tests.
- Use context in R.
- Use context in C API DMatrix initialization. (0 threads is used as dft).
 2023-01-30 15:25:31 +08:00
Jiaming Yuan
21a28f2cc5
Small refactor for hist builder. (#8698) 
- Use span instead of vector as parameter. No perf change as the builder work on pointer.
- Use const pointer for reg tree.
 2023-01-30 14:06:41 +08:00
Rong Ou
8af98e30fc
Use in-memory communicator to test quantile (#8710) 2023-01-27 23:28:28 +08:00
James Lamb
96e6b6beba
[ci] remove unused imports in tests (#8707) 2023-01-25 14:10:29 +08:00