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Separate Depthwidth and Lossguide growing policy in fast histogram (#4102)

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* add back train method but mark as deprecated

* add back train method but mark as deprecated

* add back train method but mark as deprecated

* fix scalastyle error

* fix scalastyle error

* fix scalastyle error

* fix scalastyle error

* init

* more changes

* temp

* update

* udpate rabit

* change the histogram

* update kfactor

* sync per node stats

* temp

* update

* final

* code clean

* update rabit

* more cleanup

* fix errors

* fix failed tests

* enforce c++11

* broadcast subsampled feature correctly

* init col

* temp

* col sampling

* fix histmastrix init

* fix col sampling

* remove cout

* fix out of bound access

* fix core dump

remove core dump file

* disbale test temporarily

* update

* add fid

* print perf data

* update

* revert some changes

* temp

* temp

* pass all tests

* bring back some tests

* recover some changes

* fix lint issue

* enable monotone and interaction constraints

* don't specify default for monotone and interactions

* recover column init part

* more recovery

* fix core dumps

* code clean

* revert some changes

* fix test compilation issue

* fix lint issue

* resolve compilation issue

* fix issues of lint caused by rebase

* fix stylistic changes and change variable names

* use regtree internal function

* modularize depth width

* address the comments

* fix failed tests

* wrap perf timers with class

* fix lint

* fix num_leaves count

* fix indention

* Update src/tree/updater_quantile_hist.cc

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* Update src/tree/updater_quantile_hist.h

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* Update src/tree/updater_quantile_hist.cc

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* Update src/tree/updater_quantile_hist.cc

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* Update src/tree/updater_quantile_hist.cc

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* Update src/tree/updater_quantile_hist.h

Co-Authored-By: CodingCat <CodingCat@users.noreply.github.com>

* merge

* fix compilation
This commit is contained in:
Nan Zhu 2019-02-13 12:56:19 -08:00 committed by GitHub
parent 3be1b9ae30
commit c18a3660fa
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GPG Key ID: 4AEE18F83AFDEB23
8 changed files with 457 additions and 189 deletions
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2
jvm-packages/dev/build.sh
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@ -17,5 +17,5 @@ rm /usr/bin/python
ln -s /opt/rh/python27/root/usr/bin/python /usr/bin/python ln -s /opt/rh/python27/root/usr/bin/python /usr/bin/python
# build xgboost # build xgboost
cd /xgboost/jvm-packages;mvn package cd /xgboost/jvm-packages;ulimit -c unlimited;mvn package

81
jvm-packages/xgboost4j-spark/src/test/scala/ml/dmlc/xgboost4j/scala/spark/XGBoostGeneralSuite.scala
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@ -80,7 +80,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val trainingRDD = sc.parallelize(Classification.train) val trainingRDD = sc.parallelize(Classification.train)
val (booster, metrics) = XGBoost.trainDistributed( val (booster, metrics) = XGBoost.trainDistributed(
trainingRDD, trainingRDD,
List("eta" -> "1", "max_depth" -> "6", "silent" -> "1", List("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers, "objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers,
"custom_eval" -> null, "custom_obj" -> null, "use_external_memory" -> false, "custom_eval" -> null, "custom_obj" -> null, "use_external_memory" -> false,
"missing" -> Float.NaN).toMap, "missing" -> Float.NaN).toMap,
@ -92,7 +92,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers, "objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers,
"use_external_memory" -> true) "use_external_memory" -> true)
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
@ -104,54 +104,78 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers, "objective" -> "binary:logistic", "num_round" -> 5, "num_workers" -> numWorkers,
"tracker_conf" -> TrackerConf(60 * 60 * 1000, "scala")) "tracker_conf" -> TrackerConf(60 * 60 * 1000, "scala"))
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1) assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
} }
test("test with fast histo with monotone_constraints") { test("test with quantile hist with monotone_constraints (lossguide)") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", val paramMap = Map("eta" -> "1",
"max_depth" -> "6", "silent" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "lossguide",
"num_round" -> 5, "num_workers" -> numWorkers, "monotone_constraints" -> "(1, 0)")
val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
}
test("test with quantile hist with interaction_constraints (lossguide)") {
val eval = new EvalError()
val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1",
"max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "lossguide",
"num_round" -> 5, "num_workers" -> numWorkers, "interaction_constraints" -> "[[1,2],[2,3,4]]")
val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
}
test("test with quantile hist with monotone_constraints (depthwise)") {
val eval = new EvalError()
val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1",
"max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise", "objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise",
"num_round" -> 5, "num_workers" -> numWorkers, "monotone_constraints" -> "(1, 0)") "num_round" -> 5, "num_workers" -> numWorkers, "monotone_constraints" -> "(1, 0)")
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1) assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
} }
test("test with fast histo with interaction_constraints") { test("test with quantile hist with interaction_constraints (depthwise)") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", val paramMap = Map("eta" -> "1",
"max_depth" -> "6", "silent" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise", "objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise",
"num_round" -> 5, "num_workers" -> numWorkers, "interaction_constraints" -> "[[1,2],[2,3,4]]") "num_round" -> 5, "num_workers" -> numWorkers, "interaction_constraints" -> "[[1,2],[2,3,4]]")
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1) assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
} }
test("test with fast histo depthwise") { test("test with quantile hist depthwise") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", val paramMap = Map("eta" -> "1",
"max_depth" -> "6", "silent" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise", "objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "depthwise",
"num_round" -> 5, "num_workers" -> numWorkers) "num_round" -> 5, "num_workers" -> numWorkers)
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1) assert(eval.eval(model._booster.predict(testDM, outPutMargin = true), testDM) < 0.1)
} }
test("test with fast histo lossguide") { test("test with quantile hist lossguide") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "0", "silent" -> "1", val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "lossguide", "objective" -> "binary:logistic", "tree_method" -> "hist", "grow_policy" -> "lossguide",
"max_leaves" -> "8", "num_round" -> 5, "max_leaves" -> "8", "num_round" -> 5,
"num_workers" -> numWorkers) "num_workers" -> numWorkers)
@ -160,11 +184,11 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
assert(x < 0.1) assert(x < 0.1)
} }
test("test with fast histo lossguide with max bin") { test("test with quantile hist lossguide with max bin") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "0", "silent" -> "0", val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "lossguide", "max_leaves" -> "8", "max_bin" -> "16", "grow_policy" -> "lossguide", "max_leaves" -> "8", "max_bin" -> "16",
"eval_metric" -> "error", "num_round" -> 5, "num_workers" -> numWorkers) "eval_metric" -> "error", "num_round" -> 5, "num_workers" -> numWorkers)
@ -173,11 +197,11 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
assert(x < 0.1) assert(x < 0.1)
} }
test("test with fast histo depthwidth with max depth") { test("test with quantile hist depthwidth with max depth") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "6", "silent" -> "0", val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "depthwise", "max_depth" -> "2", "grow_policy" -> "depthwise", "max_depth" -> "2",
"eval_metric" -> "error", "num_round" -> 10, "num_workers" -> numWorkers) "eval_metric" -> "error", "num_round" -> 10, "num_workers" -> numWorkers)
@ -186,11 +210,11 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
assert(x < 0.1) assert(x < 0.1)
} }
test("test with fast histo depthwidth with max depth and max bin") { test("test with quantile hist depthwidth with max depth and max bin") {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "6", "silent" -> "0", val paramMap = Map("eta" -> "1", "gamma" -> "0.5", "max_depth" -> "6",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "depthwise", "max_depth" -> "2", "max_bin" -> "2", "grow_policy" -> "depthwise", "max_depth" -> "2", "max_bin" -> "2",
"eval_metric" -> "error", "num_round" -> 10, "num_workers" -> numWorkers) "eval_metric" -> "error", "num_round" -> 10, "num_workers" -> numWorkers)
@ -217,7 +241,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
} }
val denseDF = buildDenseDataFrame().repartition(4) val denseDF = buildDenseDataFrame().repartition(4)
val paramMap = List("eta" -> "1", "max_depth" -> "2", "silent" -> "1", val paramMap = List("eta" -> "1", "max_depth" -> "2",
"objective" -> "binary:logistic", "missing" -> -0.1f, "num_workers" -> numWorkers).toMap "objective" -> "binary:logistic", "missing" -> -0.1f, "num_workers" -> numWorkers).toMap
val model = new XGBoostClassifier(paramMap).fit(denseDF) val model = new XGBoostClassifier(paramMap).fit(denseDF)
model.transform(denseDF).collect() model.transform(denseDF).collect()
@ -227,7 +251,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val eval = new EvalError() val eval = new EvalError()
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "timeout_request_workers" -> 0L, "objective" -> "binary:logistic", "timeout_request_workers" -> 0L,
"num_round" -> 5, "num_workers" -> numWorkers) "num_round" -> 5, "num_workers" -> numWorkers)
val model = new XGBoostClassifier(paramMap).fit(training) val model = new XGBoostClassifier(paramMap).fit(training)
@ -241,7 +265,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val testDM = new DMatrix(Classification.test.iterator) val testDM = new DMatrix(Classification.test.iterator)
val tmpPath = Files.createTempDirectory("model1").toAbsolutePath.toString val tmpPath = Files.createTempDirectory("model1").toAbsolutePath.toString
val paramMap = Map("eta" -> "1", "max_depth" -> 2, "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> 2,
"objective" -> "binary:logistic", "checkpoint_path" -> tmpPath, "objective" -> "binary:logistic", "checkpoint_path" -> tmpPath,
"checkpoint_interval" -> 2, "num_workers" -> numWorkers) "checkpoint_interval" -> 2, "num_workers" -> numWorkers)
@ -295,16 +319,17 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
val trainingRDD = sc.parallelize(Ranking.train, 5) val trainingRDD = sc.parallelize(Ranking.train, 5)
val (booster, _) = XGBoost.trainDistributed( val (booster, _) = XGBoost.trainDistributed(
trainingRDD, trainingRDD,
List("eta" -> "1", "max_depth" -> "6", "silent" -> "1", List("eta" -> "1", "max_depth" -> "6",
"objective" -> "rank:pairwise", "num_round" -> 5, "num_workers" -> numWorkers, "objective" -> "rank:pairwise", "num_round" -> 5, "num_workers" -> numWorkers,
"missing" -> Float.NaN, "use_external_memory" -> false).toMap, "custom_eval" -> null, "custom_obj" -> null, "use_external_memory" -> false,
"missing" -> Float.NaN).toMap,
hasGroup = true) hasGroup = true)
assert(booster != null) assert(booster != null)
} }
test("training summary") { test("training summary") {
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "num_round" -> 5, "nWorkers" -> numWorkers) "objective" -> "binary:logistic", "num_round" -> 5, "nWorkers" -> numWorkers)
val trainingDF = buildDataFrame(Classification.train) val trainingDF = buildDataFrame(Classification.train)
@ -316,7 +341,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
} }
test("train/test split") { test("train/test split") {
val paramMap = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "train_test_ratio" -> "0.5", "objective" -> "binary:logistic", "train_test_ratio" -> "0.5",
"num_round" -> 5, "num_workers" -> numWorkers) "num_round" -> 5, "num_workers" -> numWorkers)
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
@ -332,7 +357,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
test("train with multiple validation datasets (non-ranking)") { test("train with multiple validation datasets (non-ranking)") {
val training = buildDataFrame(Classification.train) val training = buildDataFrame(Classification.train)
val Array(train, eval1, eval2) = training.randomSplit(Array(0.6, 0.2, 0.2)) val Array(train, eval1, eval2) = training.randomSplit(Array(0.6, 0.2, 0.2))
val paramMap1 = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap1 = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "objective" -> "binary:logistic",
"num_round" -> 5, "num_workers" -> numWorkers) "num_round" -> 5, "num_workers" -> numWorkers)
@ -345,7 +370,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(0)) assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(0))
assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(1)) assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(1))
val paramMap2 = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap2 = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "binary:logistic", "objective" -> "binary:logistic",
"num_round" -> 5, "num_workers" -> numWorkers, "num_round" -> 5, "num_workers" -> numWorkers,
"eval_sets" -> Map("eval1" -> eval1, "eval2" -> eval2)) "eval_sets" -> Map("eval1" -> eval1, "eval2" -> eval2))
@ -362,7 +387,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
test("train with multiple validation datasets (ranking)") { test("train with multiple validation datasets (ranking)") {
val training = buildDataFrameWithGroup(Ranking.train, 5) val training = buildDataFrameWithGroup(Ranking.train, 5)
val Array(train, eval1, eval2) = training.randomSplit(Array(0.6, 0.2, 0.2)) val Array(train, eval1, eval2) = training.randomSplit(Array(0.6, 0.2, 0.2))
val paramMap1 = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap1 = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "rank:pairwise", "objective" -> "rank:pairwise",
"num_round" -> 5, "num_workers" -> numWorkers, "group_col" -> "group") "num_round" -> 5, "num_workers" -> numWorkers, "group_col" -> "group")
val xgb1 = new XGBoostRegressor(paramMap1).setEvalSets(Map("eval1" -> eval1, "eval2" -> eval2)) val xgb1 = new XGBoostRegressor(paramMap1).setEvalSets(Map("eval1" -> eval1, "eval2" -> eval2))
@ -375,7 +400,7 @@ class XGBoostGeneralSuite extends FunSuite with PerTest {
assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(0)) assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(0))
assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(1)) assert(model1.summary.trainObjectiveHistory !== model1.summary.validationObjectiveHistory(1))
val paramMap2 = Map("eta" -> "1", "max_depth" -> "6", "silent" -> "1", val paramMap2 = Map("eta" -> "1", "max_depth" -> "6",
"objective" -> "rank:pairwise", "objective" -> "rank:pairwise",
"num_round" -> 5, "num_workers" -> numWorkers, "group_col" -> "group", "num_round" -> 5, "num_workers" -> numWorkers, "group_col" -> "group",
"eval_sets" -> Map("eval1" -> eval1, "eval2" -> eval2)) "eval_sets" -> Map("eval1" -> eval1, "eval2" -> eval2))

31
jvm-packages/xgboost4j/src/test/java/ml/dmlc/xgboost4j/java/BoosterImplTest.java
View File

@ -342,7 +342,6 @@ public class BoosterImplTest {
public void testBoosterEarlyStop() throws XGBoostError, IOException { public void testBoosterEarlyStop() throws XGBoostError, IOException {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test"); DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 3); put("max_depth", 3);
@ -375,7 +374,7 @@ public class BoosterImplTest {
} }
} }
private void testWithFastHisto(DMatrix trainingSet, Map<String, DMatrix> watches, int round, private void testWithQuantileHisto(DMatrix trainingSet, Map<String, DMatrix> watches, int round,
Map<String, Object> paramMap, float threshold) throws XGBoostError { Map<String, Object> paramMap, float threshold) throws XGBoostError {
float[][] metrics = new float[watches.size()][round]; float[][] metrics = new float[watches.size()][round];
Booster booster = XGBoost.train(trainingSet, paramMap, round, watches, Booster booster = XGBoost.train(trainingSet, paramMap, round, watches,
@ -393,10 +392,9 @@ public class BoosterImplTest {
} }
@Test @Test
public void testFastHistoDepthWise() throws XGBoostError { public void testQuantileHistoDepthWise() throws XGBoostError {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test"); DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 3); put("max_depth", 3);
@ -410,14 +408,13 @@ public class BoosterImplTest {
Map<String, DMatrix> watches = new HashMap<>(); Map<String, DMatrix> watches = new HashMap<>();
watches.put("training", trainMat); watches.put("training", trainMat);
watches.put("test", testMat); watches.put("test", testMat);
testWithFastHisto(trainMat, watches, 10, paramMap, 0.0f); testWithQuantileHisto(trainMat, watches, 10, paramMap, 0.95f);
} }
@Test @Test
public void testFastHistoLossGuide() throws XGBoostError { public void testQuantileHistoLossGuide() throws XGBoostError {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test"); DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 0); put("max_depth", 0);
@ -432,14 +429,13 @@ public class BoosterImplTest {
Map<String, DMatrix> watches = new HashMap<>(); Map<String, DMatrix> watches = new HashMap<>();
watches.put("training", trainMat); watches.put("training", trainMat);
watches.put("test", testMat); watches.put("test", testMat);
testWithFastHisto(trainMat, watches, 10, paramMap, 0.0f); testWithQuantileHisto(trainMat, watches, 10, paramMap, 0.95f);
} }
@Test @Test
public void testFastHistoLossGuideMaxBin() throws XGBoostError { public void testQuantileHistoLossGuideMaxBin() throws XGBoostError {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test"); DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 0); put("max_depth", 0);
@ -454,7 +450,7 @@ public class BoosterImplTest {
}; };
Map<String, DMatrix> watches = new HashMap<>(); Map<String, DMatrix> watches = new HashMap<>();
watches.put("training", trainMat); watches.put("training", trainMat);
testWithFastHisto(trainMat, watches, 10, paramMap, 0.0f); testWithQuantileHisto(trainMat, watches, 10, paramMap, 0.95f);
} }
@Test @Test
@ -534,38 +530,33 @@ public class BoosterImplTest {
} }
@Test @Test
public void testFastHistoDepthwiseMaxDepth() throws XGBoostError { public void testQuantileHistoDepthwiseMaxDepth() throws XGBoostError {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 3); put("max_depth", 3);
put("silent", 1); put("silent", 1);
put("objective", "binary:logistic"); put("objective", "binary:logistic");
put("tree_method", "hist"); put("tree_method", "hist");
put("max_depth", 2);
put("grow_policy", "depthwise"); put("grow_policy", "depthwise");
put("eval_metric", "auc"); put("eval_metric", "auc");
} }
}; };
Map<String, DMatrix> watches = new HashMap<>(); Map<String, DMatrix> watches = new HashMap<>();
watches.put("training", trainMat); watches.put("training", trainMat);
testWithFastHisto(trainMat, watches, 10, paramMap, 0.85f); testWithQuantileHisto(trainMat, watches, 10, paramMap, 0.95f);
} }
@Test @Test
public void testFastHistoDepthwiseMaxDepthMaxBin() throws XGBoostError { public void testQuantileHistoDepthwiseMaxDepthMaxBin() throws XGBoostError {
DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train"); DMatrix trainMat = new DMatrix("../../demo/data/agaricus.txt.train");
DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test"); DMatrix testMat = new DMatrix("../../demo/data/agaricus.txt.test");
// testBoosterWithFastHistogram(trainMat, testMat);
Map<String, Object> paramMap = new HashMap<String, Object>() { Map<String, Object> paramMap = new HashMap<String, Object>() {
{ {
put("max_depth", 3); put("max_depth", 3);
put("silent", 1); put("silent", 1);
put("objective", "binary:logistic"); put("objective", "binary:logistic");
put("tree_method", "hist"); put("tree_method", "hist");
put("max_depth", 2);
put("max_bin", 2); put("max_bin", 2);
put("grow_policy", "depthwise"); put("grow_policy", "depthwise");
put("eval_metric", "auc"); put("eval_metric", "auc");
@ -573,7 +564,7 @@ public class BoosterImplTest {
}; };
Map<String, DMatrix> watches = new HashMap<>(); Map<String, DMatrix> watches = new HashMap<>();
watches.put("training", trainMat); watches.put("training", trainMat);
testWithFastHisto(trainMat, watches, 10, paramMap, 0.85f); testWithQuantileHisto(trainMat, watches, 10, paramMap, 0.95f);
} }
/** /**

32
jvm-packages/xgboost4j/src/test/scala/ml/dmlc/xgboost4j/scala/ScalaBoosterImplSuite.scala
View File

@ -77,7 +77,7 @@ class ScalaBoosterImplSuite extends FunSuite {
XGBoost.train(trainMat, paramMap, round, watches) XGBoost.train(trainMat, paramMap, round, watches)
} }
private def trainBoosterWithFastHisto( private def trainBoosterWithQuantileHisto(
trainMat: DMatrix, trainMat: DMatrix,
watches: Map[String, DMatrix], watches: Map[String, DMatrix],
round: Int, round: Int,
@ -146,57 +146,57 @@ class ScalaBoosterImplSuite extends FunSuite {
XGBoost.crossValidation(trainMat, params, round, nfold) XGBoost.crossValidation(trainMat, params, round, nfold)
} }
test("test with fast histo depthwise") { test("test with quantile histo depthwise") {
val trainMat = new DMatrix("../../demo/data/agaricus.txt.train") val trainMat = new DMatrix("../../demo/data/agaricus.txt.train")
val testMat = new DMatrix("../../demo/data/agaricus.txt.test") val testMat = new DMatrix("../../demo/data/agaricus.txt.test")
val paramMap = List("max_depth" -> "3", "silent" -> "0", val paramMap = List("max_depth" -> "3", "silent" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "depthwise", "eval_metric" -> "auc").toMap "grow_policy" -> "depthwise", "eval_metric" -> "auc").toMap
trainBoosterWithFastHisto(trainMat, Map("training" -> trainMat, "test" -> testMat), trainBoosterWithQuantileHisto(trainMat, Map("training" -> trainMat, "test" -> testMat),
round = 10, paramMap, 0.0f) round = 10, paramMap, 0.95f)
} }
test("test with fast histo lossguide") { test("test with quantile histo lossguide") {
val trainMat = new DMatrix("../../demo/data/agaricus.txt.train") val trainMat = new DMatrix("../../demo/data/agaricus.txt.train")
val testMat = new DMatrix("../../demo/data/agaricus.txt.test") val testMat = new DMatrix("../../demo/data/agaricus.txt.test")
val paramMap = List("max_depth" -> "0", "silent" -> "0", val paramMap = List("max_depth" -> "0", "silent" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "lossguide", "max_leaves" -> "8", "eval_metric" -> "auc").toMap "grow_policy" -> "lossguide", "max_leaves" -> "8", "eval_metric" -> "auc").toMap
trainBoosterWithFastHisto(trainMat, Map("training" -> trainMat, "test" -> testMat), trainBoosterWithQuantileHisto(trainMat, Map("training" -> trainMat, "test" -> testMat),
round = 10, paramMap, 0.0f) round = 10, paramMap, 0.95f)
} }
test("test with fast histo lossguide with max bin") { test("test with quantile histo lossguide with max bin") {
val trainMat = new DMatrix("../../demo/data/agaricus.txt.train") val trainMat = new DMatrix("../../demo/data/agaricus.txt.train")
val testMat = new DMatrix("../../demo/data/agaricus.txt.test") val testMat = new DMatrix("../../demo/data/agaricus.txt.test")
val paramMap = List("max_depth" -> "0", "silent" -> "0", val paramMap = List("max_depth" -> "0", "silent" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "lossguide", "max_leaves" -> "8", "max_bin" -> "16", "grow_policy" -> "lossguide", "max_leaves" -> "8", "max_bin" -> "16",
"eval_metric" -> "auc").toMap "eval_metric" -> "auc").toMap
trainBoosterWithFastHisto(trainMat, Map("training" -> trainMat), trainBoosterWithQuantileHisto(trainMat, Map("training" -> trainMat),
round = 10, paramMap, 0.0f) round = 10, paramMap, 0.95f)
} }
test("test with fast histo depthwidth with max depth") { test("test with quantile histo depthwidth with max depth") {
val trainMat = new DMatrix("../../demo/data/agaricus.txt.train") val trainMat = new DMatrix("../../demo/data/agaricus.txt.train")
val testMat = new DMatrix("../../demo/data/agaricus.txt.test") val testMat = new DMatrix("../../demo/data/agaricus.txt.test")
val paramMap = List("max_depth" -> "0", "silent" -> "0", val paramMap = List("max_depth" -> "0", "silent" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "depthwise", "max_leaves" -> "8", "max_depth" -> "2", "grow_policy" -> "depthwise", "max_leaves" -> "8", "max_depth" -> "2",
"eval_metric" -> "auc").toMap "eval_metric" -> "auc").toMap
trainBoosterWithFastHisto(trainMat, Map("training" -> trainMat), trainBoosterWithQuantileHisto(trainMat, Map("training" -> trainMat),
round = 10, paramMap, 0.85f) round = 10, paramMap, 0.95f)
} }
test("test with fast histo depthwidth with max depth and max bin") { test("test with quantile histo depthwidth with max depth and max bin") {
val trainMat = new DMatrix("../../demo/data/agaricus.txt.train") val trainMat = new DMatrix("../../demo/data/agaricus.txt.train")
val testMat = new DMatrix("../../demo/data/agaricus.txt.test") val testMat = new DMatrix("../../demo/data/agaricus.txt.test")
val paramMap = List("max_depth" -> "0", "silent" -> "0", val paramMap = List("max_depth" -> "0", "silent" -> "0",
"objective" -> "binary:logistic", "tree_method" -> "hist", "objective" -> "binary:logistic", "tree_method" -> "hist",
"grow_policy" -> "depthwise", "max_depth" -> "2", "max_bin" -> "2", "grow_policy" -> "depthwise", "max_depth" -> "2", "max_bin" -> "2",
"eval_metric" -> "auc").toMap "eval_metric" -> "auc").toMap
trainBoosterWithFastHisto(trainMat, Map("training" -> trainMat), trainBoosterWithQuantileHisto(trainMat, Map("training" -> trainMat),
round = 10, paramMap, 0.85f) round = 10, paramMap, 0.95f)
} }
test("test training from existing model in scala") { test("test training from existing model in scala") {

5
src/common/hist_util.cc
View File

@ -1,8 +1,6 @@
/*! /*!
* Copyright 2017-2018 by Contributors * Copyright 2017-2019 by Contributors
* \file hist_util.h * \file hist_util.h
* \brief Utilities to store histograms
* \author Philip Cho, Tianqi Chen
*/ */
#include <rabit/rabit.h> #include <rabit/rabit.h>
#include <dmlc/omp.h> #include <dmlc/omp.h>
@ -161,6 +159,7 @@ void GHistIndexMatrix::Init(DMatrix* p_fmat, int max_num_bins) {
SparsePage::Inst inst = batch[i]; SparsePage::Inst inst = batch[i];
CHECK_EQ(ibegin + inst.size(), iend); CHECK_EQ(ibegin + inst.size(), iend);
for (bst_uint j = 0; j < inst.size(); ++j) { for (bst_uint j = 0; j < inst.size(); ++j) {
uint32_t idx = cut.GetBinIdx(inst[j]); uint32_t idx = cut.GetBinIdx(inst[j]);

310
src/tree/updater_quantile_hist.cc
View File

@ -73,8 +73,7 @@ void QuantileHistMaker::Update(HostDeviceVector<GradientPair> *gpair,
std::unique_ptr<SplitEvaluator>(spliteval_->GetHostClone()))); std::unique_ptr<SplitEvaluator>(spliteval_->GetHostClone())));
} }
for (auto tree : trees) { for (auto tree : trees) {
builder_->Update builder_->Update(gmat_, gmatb_, column_matrix_, gpair, dmat, tree);
(gmat_, gmatb_, column_matrix_, gpair, dmat, tree);
} }
param_.learning_rate = lr; param_.learning_rate = lr;
} }
@ -89,120 +88,275 @@ bool QuantileHistMaker::UpdatePredictionCache(
} }
} }
void QuantileHistMaker::Builder::Update(const GHistIndexMatrix& gmat, void QuantileHistMaker::Builder::SyncHistograms(
int starting_index,
int sync_count,
RegTree *p_tree) {
perf_monitor.TickStart();
this->histred_.Allreduce(hist_[starting_index].data(), hist_builder_.GetNumBins() * sync_count);
// use Subtraction Trick
for (auto local_it = nodes_for_subtraction_trick_.begin();
local_it != nodes_for_subtraction_trick_.end(); local_it++) {
hist_.AddHistRow(local_it->first);
SubtractionTrick(hist_[local_it->first], hist_[local_it->second],
hist_[(*p_tree)[local_it->first].Parent()]);
}
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::BUILD_HIST);
}
void QuantileHistMaker::Builder::BuildLocalHistograms(
int *starting_index,
int *sync_count,
const GHistIndexMatrix &gmat,
const GHistIndexBlockMatrix &gmatb,
RegTree *p_tree,
const std::vector<GradientPair> &gpair_h) {
perf_monitor.TickStart();
for (size_t k = 0; k < qexpand_depth_wise_.size(); k++) {
int nid = qexpand_depth_wise_[k].nid;
RegTree::Node &node = (*p_tree)[nid];
if (rabit::IsDistributed()) {
if (node.IsRoot() || node.IsLeftChild()) {
// in distributed setting, we always calcuate from left child or root node
hist_.AddHistRow(nid);
BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
if (!node.IsRoot()) {
nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].RightChild()] = nid;
}
(*sync_count)++;
(*starting_index) = std::min((*starting_index), nid);
}
} else {
if (!node.IsRoot() && node.IsLeftChild() &&
(row_set_collection_[nid].Size() <
row_set_collection_[(*p_tree)[node.Parent()].RightChild()].Size())) {
hist_.AddHistRow(nid);
BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].RightChild()] = nid;
(*sync_count)++;
(*starting_index) = std::min((*starting_index), nid);
} else if (!node.IsRoot() && !node.IsLeftChild() &&
(row_set_collection_[nid].Size() <=
row_set_collection_[(*p_tree)[node.Parent()].LeftChild()].Size())) {
hist_.AddHistRow(nid);
BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].LeftChild()] = nid;
(*sync_count)++;
(*starting_index) = std::min((*starting_index), nid);
} else if (node.IsRoot()) {
// root node
hist_.AddHistRow(nid);
BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
(*sync_count)++;
(*starting_index) = std::min((*starting_index), nid);
}
}
}
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::BUILD_HIST);
}
void QuantileHistMaker::Builder::BuildNodeStats(
const GHistIndexMatrix &gmat,
DMatrix *p_fmat,
RegTree *p_tree,
const std::vector<GradientPair> &gpair_h) {
perf_monitor.TickStart();
for (size_t k = 0; k < qexpand_depth_wise_.size(); k++) {
int nid = qexpand_depth_wise_[k].nid;
this->InitNewNode(nid, gmat, gpair_h, *p_fmat, *p_tree);
// add constraints
if (!(*p_tree)[nid].IsLeftChild() && !(*p_tree)[nid].IsRoot()) {
// it's a right child
auto parent_id = (*p_tree)[nid].Parent();
auto left_sibling_id = (*p_tree)[parent_id].LeftChild();
auto parent_split_feature_id = snode_[parent_id].best.SplitIndex();
spliteval_->AddSplit(parent_id, left_sibling_id, nid, parent_split_feature_id,
snode_[left_sibling_id].weight, snode_[nid].weight);
}
}
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::INIT_NEW_NODE);
}
void QuantileHistMaker::Builder::EvaluateSplits(
const GHistIndexMatrix &gmat,
const ColumnMatrix &column_matrix,
DMatrix *p_fmat,
RegTree *p_tree,
int *num_leaves,
int depth,
unsigned *timestamp,
std::vector<ExpandEntry> *temp_qexpand_depth) {
for (size_t k = 0; k < qexpand_depth_wise_.size(); k++) {
int nid = qexpand_depth_wise_[k].nid;
perf_monitor.TickStart();
this->EvaluateSplit(nid, gmat, hist_, *p_fmat, *p_tree);
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::EVALUATE_SPLIT);
if (snode_[nid].best.loss_chg < kRtEps ||
(param_.max_depth > 0 && depth == param_.max_depth) ||
(param_.max_leaves > 0 && (*num_leaves) == param_.max_leaves)) {
(*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate);
} else {
perf_monitor.TickStart();
this->ApplySplit(nid, gmat, column_matrix, hist_, *p_fmat, p_tree);
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::APPLY_SPLIT);
int left_id = (*p_tree)[nid].LeftChild();
int right_id = (*p_tree)[nid].RightChild();
temp_qexpand_depth->push_back(ExpandEntry(left_id,
p_tree->GetDepth(left_id), 0.0, (*timestamp)++));
temp_qexpand_depth->push_back(ExpandEntry(right_id,
p_tree->GetDepth(right_id), 0.0, (*timestamp)++));
// - 1 parent + 2 new children
(*num_leaves)++;
}
}
}
void QuantileHistMaker::Builder::ExpandWithDepthWidth(
const GHistIndexMatrix &gmat,
const GHistIndexBlockMatrix &gmatb,
const ColumnMatrix &column_matrix,
DMatrix *p_fmat,
RegTree *p_tree,
const std::vector<GradientPair> &gpair_h) {
unsigned timestamp = 0;
int num_leaves = 0;
// in depth_wise growing, we feed loss_chg with 0.0 since it is not used anyway
qexpand_depth_wise_.push_back(ExpandEntry(0, p_tree->GetDepth(0), 0.0, timestamp++));
++num_leaves;
for (int depth = 0; depth < param_.max_depth + 1; depth++) {
int starting_index = std::numeric_limits<int>::max();
int sync_count = 0;
std::vector<ExpandEntry> temp_qexpand_depth;
BuildLocalHistograms(&starting_index, &sync_count, gmat, gmatb, p_tree, gpair_h);
SyncHistograms(starting_index, sync_count, p_tree);
BuildNodeStats(gmat, p_fmat, p_tree, gpair_h);
EvaluateSplits(gmat, column_matrix, p_fmat, p_tree, &num_leaves, depth, &timestamp,
&temp_qexpand_depth);
// clean up
qexpand_depth_wise_.clear();
nodes_for_subtraction_trick_.clear();
if (temp_qexpand_depth.empty()) {
break;
} else {
qexpand_depth_wise_ = temp_qexpand_depth;
temp_qexpand_depth.clear();
}
}
}
void QuantileHistMaker::Builder::ExpandWithLossGuide(
const GHistIndexMatrix& gmat,
const GHistIndexBlockMatrix& gmatb, const GHistIndexBlockMatrix& gmatb,
const ColumnMatrix& column_matrix, const ColumnMatrix& column_matrix,
HostDeviceVector<GradientPair>* gpair,
DMatrix* p_fmat, DMatrix* p_fmat,
RegTree* p_tree) { RegTree* p_tree,
double gstart = dmlc::GetTime(); const std::vector<GradientPair>& gpair_h) {
int num_leaves = 0;
unsigned timestamp = 0; unsigned timestamp = 0;
int num_leaves = 0;
double tstart;
double time_init_data = 0;
double time_init_new_node = 0;
double time_build_hist = 0;
double time_evaluate_split = 0;
double time_apply_split = 0;
const std::vector<GradientPair>& gpair_h = gpair->ConstHostVector();
spliteval_->Reset();
tstart = dmlc::GetTime();
this->InitData(gmat, gpair_h, *p_fmat, *p_tree);
time_init_data = dmlc::GetTime() - tstart;
// FIXME(hcho3): this code is broken when param.num_roots > 1. Please fix it
CHECK_EQ(p_tree->param.num_roots, 1)
<< "tree_method=hist does not support multiple roots at this moment";
for (int nid = 0; nid < p_tree->param.num_roots; ++nid) { for (int nid = 0; nid < p_tree->param.num_roots; ++nid) {
tstart = dmlc::GetTime(); perf_monitor.TickStart();
hist_.AddHistRow(nid); hist_.AddHistRow(nid);
BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid]); BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], true);
time_build_hist += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::BUILD_HIST);
tstart = dmlc::GetTime(); perf_monitor.TickStart();
this->InitNewNode(nid, gmat, gpair_h, *p_fmat, *p_tree); this->InitNewNode(nid, gmat, gpair_h, *p_fmat, *p_tree);
time_init_new_node += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::INIT_NEW_NODE);
tstart = dmlc::GetTime(); perf_monitor.TickStart();
this->EvaluateSplit(nid, gmat, hist_, *p_fmat, *p_tree); this->EvaluateSplit(nid, gmat, hist_, *p_fmat, *p_tree);
time_evaluate_split += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::EVALUATE_SPLIT);
qexpand_->push(ExpandEntry(nid, p_tree->GetDepth(nid), qexpand_loss_guided_->push(ExpandEntry(nid, p_tree->GetDepth(nid),
snode_[nid].best.loss_chg, snode_[nid].best.loss_chg,
timestamp++)); timestamp++));
++num_leaves; ++num_leaves;
} }
while (!qexpand_->empty()) { while (!qexpand_loss_guided_->empty()) {
const ExpandEntry candidate = qexpand_->top(); const ExpandEntry candidate = qexpand_loss_guided_->top();
const int nid = candidate.nid; const int nid = candidate.nid;
qexpand_->pop(); qexpand_loss_guided_->pop();
if (candidate.loss_chg <= kRtEps if (candidate.loss_chg <= kRtEps
|| (param_.max_depth > 0 && candidate.depth == param_.max_depth) || (param_.max_depth > 0 && candidate.depth == param_.max_depth)
|| (param_.max_leaves > 0 && num_leaves == param_.max_leaves) ) { || (param_.max_leaves > 0 && num_leaves == param_.max_leaves) ) {
(*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate); (*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate);
} else { } else {
tstart = dmlc::GetTime(); perf_monitor.TickStart();
this->ApplySplit(nid, gmat, column_matrix, hist_, *p_fmat, p_tree); this->ApplySplit(nid, gmat, column_matrix, hist_, *p_fmat, p_tree);
time_apply_split += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::APPLY_SPLIT);
tstart = dmlc::GetTime(); perf_monitor.TickStart();
const int cleft = (*p_tree)[nid].LeftChild(); const int cleft = (*p_tree)[nid].LeftChild();
const int cright = (*p_tree)[nid].RightChild(); const int cright = (*p_tree)[nid].RightChild();
hist_.AddHistRow(cleft); hist_.AddHistRow(cleft);
hist_.AddHistRow(cright); hist_.AddHistRow(cright);
if (rabit::IsDistributed()) { if (rabit::IsDistributed()) {
// in distributed mode, we need to keep consistent across workers // in distributed mode, we need to keep consistent across workers
BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft]); BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft], true);
SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]); SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]);
} else { } else {
if (row_set_collection_[cleft].Size() < row_set_collection_[cright].Size()) { if (row_set_collection_[cleft].Size() < row_set_collection_[cright].Size()) {
BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft]); BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft], true);
SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]); SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]);
} else { } else {
BuildHist(gpair_h, row_set_collection_[cright], gmat, gmatb, hist_[cright]); BuildHist(gpair_h, row_set_collection_[cright], gmat, gmatb, hist_[cright], true);
SubtractionTrick(hist_[cleft], hist_[cright], hist_[nid]); SubtractionTrick(hist_[cleft], hist_[cright], hist_[nid]);
} }
} }
time_build_hist += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::BUILD_HIST);
tstart = dmlc::GetTime(); perf_monitor.TickStart();
this->InitNewNode(cleft, gmat, gpair_h, *p_fmat, *p_tree); this->InitNewNode(cleft, gmat, gpair_h, *p_fmat, *p_tree);
this->InitNewNode(cright, gmat, gpair_h, *p_fmat, *p_tree); this->InitNewNode(cright, gmat, gpair_h, *p_fmat, *p_tree);
bst_uint featureid = snode_[nid].best.SplitIndex(); bst_uint featureid = snode_[nid].best.SplitIndex();
spliteval_->AddSplit(nid, cleft, cright, featureid, spliteval_->AddSplit(nid, cleft, cright, featureid,
snode_[cleft].weight, snode_[cright].weight); snode_[cleft].weight, snode_[cright].weight);
time_init_new_node += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::APPLY_SPLIT);
tstart = dmlc::GetTime(); perf_monitor.TickStart();
this->EvaluateSplit(cleft, gmat, hist_, *p_fmat, *p_tree); this->EvaluateSplit(cleft, gmat, hist_, *p_fmat, *p_tree);
this->EvaluateSplit(cright, gmat, hist_, *p_fmat, *p_tree); this->EvaluateSplit(cright, gmat, hist_, *p_fmat, *p_tree);
time_evaluate_split += dmlc::GetTime() - tstart; perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::EVALUATE_SPLIT);
qexpand_->push(ExpandEntry(cleft, p_tree->GetDepth(cleft), qexpand_loss_guided_->push(ExpandEntry(cleft, p_tree->GetDepth(cleft),
snode_[cleft].best.loss_chg, snode_[cleft].best.loss_chg,
timestamp++)); timestamp++));
qexpand_->push(ExpandEntry(cright, p_tree->GetDepth(cright), qexpand_loss_guided_->push(ExpandEntry(cright, p_tree->GetDepth(cright),
snode_[cright].best.loss_chg, snode_[cright].best.loss_chg,
timestamp++)); timestamp++));
++num_leaves; // give two and take one, as parent is no longer a leaf ++num_leaves; // give two and take one, as parent is no longer a leaf
} }
} }
}
// set all the rest expanding nodes to leaf void QuantileHistMaker::Builder::Update(const GHistIndexMatrix& gmat,
// This post condition is not needed in current code, but may be necessary const GHistIndexBlockMatrix& gmatb,
// when there are stopping rule that leaves qexpand non-empty const ColumnMatrix& column_matrix,
while (!qexpand_->empty()) { HostDeviceVector<GradientPair>* gpair,
const int nid = qexpand_->top().nid; DMatrix* p_fmat,
qexpand_->pop(); RegTree* p_tree) {
(*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate); perf_monitor.StartPerfMonitor();
const std::vector<GradientPair>& gpair_h = gpair->ConstHostVector();
spliteval_->Reset();
perf_monitor.TickStart();
this->InitData(gmat, gpair_h, *p_fmat, *p_tree);
perf_monitor.UpdatePerfTimer(TreeGrowingPerfMonitor::timer_name::INIT_DATA);
if (param_.grow_policy == TrainParam::kLossGuide) {
ExpandWithLossGuide(gmat, gmatb, column_matrix, p_fmat, p_tree, gpair_h);
} else {
ExpandWithDepthWidth(gmat, gmatb, column_matrix, p_fmat, p_tree, gpair_h);
} }
// remember auxiliary statistics in the tree node
for (int nid = 0; nid < p_tree->param.num_nodes; ++nid) { for (int nid = 0; nid < p_tree->param.num_nodes; ++nid) {
p_tree->Stat(nid).loss_chg = snode_[nid].best.loss_chg; p_tree->Stat(nid).loss_chg = snode_[nid].best.loss_chg;
p_tree->Stat(nid).base_weight = snode_[nid].weight; p_tree->Stat(nid).base_weight = snode_[nid].weight;
@ -211,30 +365,7 @@ void QuantileHistMaker::Builder::Update(const GHistIndexMatrix& gmat,
pruner_->Update(gpair, p_fmat, std::vector<RegTree*>{p_tree}); pruner_->Update(gpair, p_fmat, std::vector<RegTree*>{p_tree});
double total_time = dmlc::GetTime() - gstart; perf_monitor.EndPerfMonitor();
LOG(INFO) << "\nInitData: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_init_data
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_init_data / total_time * 100 << "%)\n"
<< "InitNewNode: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_init_new_node
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_init_new_node / total_time * 100 << "%)\n"
<< "BuildHist: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_build_hist
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_build_hist / total_time * 100 << "%)\n"
<< "EvaluateSplit: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_evaluate_split
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_evaluate_split / total_time * 100 << "%)\n"
<< "ApplySplit: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_apply_split
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_apply_split / total_time * 100 << "%)\n"
<< "========================================\n"
<< "Total: "
<< std::fixed << std::setw(6) << std::setprecision(4) << total_time;
} }
bool QuantileHistMaker::Builder::UpdatePredictionCache( bool QuantileHistMaker::Builder::UpdatePredictionCache(
@ -353,14 +484,13 @@ void QuantileHistMaker::Builder::InitData(const GHistIndexMatrix& gmat,
p_last_tree_ = &tree; p_last_tree_ = &tree;
// store a pointer to training data // store a pointer to training data
p_last_fmat_ = &fmat; p_last_fmat_ = &fmat;
// initialize feature index
if (data_layout_ == kDenseDataOneBased) {
column_sampler_.Init(info.num_col_, param_.colsample_bynode,
param_.colsample_bylevel, param_.colsample_bytree, true);
} else {
column_sampler_.Init(info.num_col_, param_.colsample_bynode,
param_.colsample_bylevel, param_.colsample_bytree, false);
} }
if (data_layout_ == kDenseDataOneBased) {
column_sampler_.Init(info.num_col_, param_.colsample_bynode, param_.colsample_bylevel,
param_.colsample_bytree, true);
} else {
column_sampler_.Init(info.num_col_, param_.colsample_bynode, param_.colsample_bylevel,
param_.colsample_bytree, false);
} }
if (data_layout_ == kDenseDataZeroBased || data_layout_ == kDenseDataOneBased) { if (data_layout_ == kDenseDataZeroBased || data_layout_ == kDenseDataOneBased) {
/* specialized code for dense data: /* specialized code for dense data:
@ -387,9 +517,9 @@ void QuantileHistMaker::Builder::InitData(const GHistIndexMatrix& gmat,
} }
{ {
if (param_.grow_policy == TrainParam::kLossGuide) { if (param_.grow_policy == TrainParam::kLossGuide) {
qexpand_.reset(new ExpandQueue(LossGuide)); qexpand_loss_guided_.reset(new ExpandQueue(LossGuide));
} else { } else {
qexpand_.reset(new ExpandQueue(DepthWise)); qexpand_depth_wise_.clear();
} }
} }
} }

159
src/tree/updater_quantile_hist.h
View File

@ -7,6 +7,7 @@
#ifndef XGBOOST_TREE_UPDATER_QUANTILE_HIST_H_ #ifndef XGBOOST_TREE_UPDATER_QUANTILE_HIST_H_
#define XGBOOST_TREE_UPDATER_QUANTILE_HIST_H_ #define XGBOOST_TREE_UPDATER_QUANTILE_HIST_H_
#include <dmlc/timer.h>
#include <rabit/rabit.h> #include <rabit/rabit.h>
#include <xgboost/tree_updater.h> #include <xgboost/tree_updater.h>
@ -14,6 +15,7 @@
#include <vector> #include <vector>
#include <string> #include <string>
#include <queue> #include <queue>
#include <iomanip>
#include <utility> #include <utility>
#include "./param.h" #include "./param.h"
@ -97,14 +99,17 @@ class QuantileHistMaker: public TreeUpdater {
const RowSetCollection::Elem row_indices, const RowSetCollection::Elem row_indices,
const GHistIndexMatrix& gmat, const GHistIndexMatrix& gmat,
const GHistIndexBlockMatrix& gmatb, const GHistIndexBlockMatrix& gmatb,
GHistRow hist) { GHistRow hist,
bool sync_hist) {
if (param_.enable_feature_grouping > 0) { if (param_.enable_feature_grouping > 0) {
hist_builder_.BuildBlockHist(gpair, row_indices, gmatb, hist); hist_builder_.BuildBlockHist(gpair, row_indices, gmatb, hist);
} else { } else {
hist_builder_.BuildHist(gpair, row_indices, gmat, hist); hist_builder_.BuildHist(gpair, row_indices, gmat, hist);
} }
if (sync_hist) {
this->histred_.Allreduce(hist.data(), hist_builder_.GetNumBins()); this->histred_.Allreduce(hist.data(), hist_builder_.GetNumBins());
} }
}
inline void SubtractionTrick(GHistRow self, GHistRow sibling, GHistRow parent) { inline void SubtractionTrick(GHistRow self, GHistRow sibling, GHistRow parent) {
hist_builder_.SubtractionTrick(self, sibling, parent); hist_builder_.SubtractionTrick(self, sibling, parent);
@ -114,6 +119,94 @@ class QuantileHistMaker: public TreeUpdater {
HostDeviceVector<bst_float>* p_out_preds); HostDeviceVector<bst_float>* p_out_preds);
protected: protected:
/* tree growing policies */
struct ExpandEntry {
int nid;
int depth;
bst_float loss_chg;
unsigned timestamp;
ExpandEntry(int nid, int depth, bst_float loss_chg, unsigned tstmp)
: nid(nid), depth(depth), loss_chg(loss_chg), timestamp(tstmp) {}
};
struct TreeGrowingPerfMonitor {
enum timer_name {INIT_DATA, INIT_NEW_NODE, BUILD_HIST, EVALUATE_SPLIT, APPLY_SPLIT};
double global_start;
// performance counters
double tstart;
double time_init_data = 0;
double time_init_new_node = 0;
double time_build_hist = 0;
double time_evaluate_split = 0;
double time_apply_split = 0;
inline void StartPerfMonitor() {
global_start = dmlc::GetTime();
}
inline void EndPerfMonitor() {
CHECK_GT(global_start, 0);
double total_time = dmlc::GetTime() - global_start;
LOG(INFO) << "\nInitData: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_init_data
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_init_data / total_time * 100 << "%)\n"
<< "InitNewNode: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_init_new_node
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_init_new_node / total_time * 100 << "%)\n"
<< "BuildHist: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_build_hist
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_build_hist / total_time * 100 << "%)\n"
<< "EvaluateSplit: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_evaluate_split
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_evaluate_split / total_time * 100 << "%)\n"
<< "ApplySplit: "
<< std::fixed << std::setw(6) << std::setprecision(4) << time_apply_split
<< " (" << std::fixed << std::setw(5) << std::setprecision(2)
<< time_apply_split / total_time * 100 << "%)\n"
<< "========================================\n"
<< "Total: "
<< std::fixed << std::setw(6) << std::setprecision(4) << total_time;
// clear performance counters
time_init_data = 0;
time_init_new_node = 0;
time_build_hist = 0;
time_evaluate_split = 0;
time_apply_split = 0;
}
inline void TickStart() {
tstart = dmlc::GetTime();
}
inline void UpdatePerfTimer(const timer_name &timer_name) {
CHECK_GT(tstart, 0);
switch (timer_name) {
case INIT_DATA:
time_init_data += dmlc::GetTime() - tstart;
break;
case INIT_NEW_NODE:
time_init_new_node += dmlc::GetTime() - tstart;
break;
case BUILD_HIST:
time_build_hist += dmlc::GetTime() - tstart;
break;
case EVALUATE_SPLIT:
time_evaluate_split += dmlc::GetTime() - tstart;
break;
case APPLY_SPLIT:
time_apply_split += dmlc::GetTime() - tstart;
break;
}
tstart = -1;
}
};
// initialize temp data structure // initialize temp data structure
void InitData(const GHistIndexMatrix& gmat, void InitData(const GHistIndexMatrix& gmat,
const std::vector<GradientPair>& gpair, const std::vector<GradientPair>& gpair,
@ -165,22 +258,45 @@ class QuantileHistMaker: public TreeUpdater {
bst_uint fid, bst_uint fid,
bst_uint nodeID); bst_uint nodeID);
/* tree growing policies */ void ExpandWithDepthWidth(const GHistIndexMatrix &gmat,
struct ExpandEntry { const GHistIndexBlockMatrix &gmatb,
int nid; const ColumnMatrix &column_matrix,
int depth; DMatrix *p_fmat,
bst_float loss_chg; RegTree *p_tree,
unsigned timestamp; const std::vector<GradientPair> &gpair_h);
ExpandEntry(int nid, int depth, bst_float loss_chg, unsigned tstmp)
: nid(nid), depth(depth), loss_chg(loss_chg), timestamp(tstmp) {} void BuildLocalHistograms(int *starting_index,
}; int *sync_count,
inline static bool DepthWise(ExpandEntry lhs, ExpandEntry rhs) { const GHistIndexMatrix &gmat,
if (lhs.depth == rhs.depth) { const GHistIndexBlockMatrix &gmatb,
return lhs.timestamp > rhs.timestamp; // favor small timestamp RegTree *p_tree,
} else { const std::vector<GradientPair> &gpair_h);
return lhs.depth > rhs.depth; // favor small depth
} void SyncHistograms(int starting_index,
} int sync_count,
RegTree *p_tree);
void BuildNodeStats(const GHistIndexMatrix &gmat,
DMatrix *p_fmat,
RegTree *p_tree,
const std::vector<GradientPair> &gpair_h);
void EvaluateSplits(const GHistIndexMatrix &gmat,
const ColumnMatrix &column_matrix,
DMatrix *p_fmat,
RegTree *p_tree,
int *num_leaves,
int depth,
unsigned *timestamp,
std::vector<ExpandEntry> *temp_qexpand_depth);
void ExpandWithLossGuide(const GHistIndexMatrix& gmat,
const GHistIndexBlockMatrix& gmatb,
const ColumnMatrix& column_matrix,
DMatrix* p_fmat,
RegTree* p_tree,
const std::vector<GradientPair>& gpair_h);
inline static bool LossGuide(ExpandEntry lhs, ExpandEntry rhs) { inline static bool LossGuide(ExpandEntry lhs, ExpandEntry rhs) {
if (lhs.loss_chg == rhs.loss_chg) { if (lhs.loss_chg == rhs.loss_chg) {
return lhs.timestamp > rhs.timestamp; // favor small timestamp return lhs.timestamp > rhs.timestamp; // favor small timestamp
@ -220,11 +336,18 @@ class QuantileHistMaker: public TreeUpdater {
using ExpandQueue = using ExpandQueue =
std::priority_queue<ExpandEntry, std::vector<ExpandEntry>, std::priority_queue<ExpandEntry, std::vector<ExpandEntry>,
std::function<bool(ExpandEntry, ExpandEntry)>>; std::function<bool(ExpandEntry, ExpandEntry)>>;
std::unique_ptr<ExpandQueue> qexpand_;
std::unique_ptr<ExpandQueue> qexpand_loss_guided_;
std::vector<ExpandEntry> qexpand_depth_wise_;
// key is the node id which should be calculated by Subtraction Trick, value is the node which
// provides the evidence for substracts
std::unordered_map<int, int> nodes_for_subtraction_trick_;
enum DataLayout { kDenseDataZeroBased, kDenseDataOneBased, kSparseData }; enum DataLayout { kDenseDataZeroBased, kDenseDataOneBased, kSparseData };
DataLayout data_layout_; DataLayout data_layout_;
TreeGrowingPerfMonitor perf_monitor;
rabit::Reducer<GradStats, GradStats::Reduce> histred_; rabit::Reducer<GradStats, GradStats::Reduce> histred_;
}; };

4
tests/cpp/tree/test_quantile_hist.cc
View File

@ -46,7 +46,7 @@ class QuantileHistMock : public QuantileHistMaker {
GHistIndexBlockMatrix quantile_index_block; GHistIndexBlockMatrix quantile_index_block;
hist_.AddHistRow(nid); hist_.AddHistRow(nid);
BuildHist(gpair, row_set_collection_[nid], BuildHist(gpair, row_set_collection_[nid],
gmat, quantile_index_block, hist_[nid]); gmat, quantile_index_block, hist_[nid], false);
std::vector<GradientPairPrecise> solution { std::vector<GradientPairPrecise> solution {
{0.27f, 0.29f}, {0.27f, 0.29f}, {0.47f, 0.49f}, {0.27f, 0.29f}, {0.27f, 0.29f}, {0.47f, 0.49f},
{0.27f, 0.29f}, {0.57f, 0.59f}, {0.26f, 0.27f}, {0.27f, 0.29f}, {0.57f, 0.59f}, {0.26f, 0.27f},
@ -79,7 +79,7 @@ class QuantileHistMock : public QuantileHistMaker {
hist_.AddHistRow(0); hist_.AddHistRow(0);
BuildHist(row_gpairs, row_set_collection_[0], BuildHist(row_gpairs, row_set_collection_[0],
gmat, quantile_index_block, hist_[0]); gmat, quantile_index_block, hist_[0], false);
RealImpl::InitNewNode(0, gmat, row_gpairs, *(*dmat), tree); RealImpl::InitNewNode(0, gmat, row_gpairs, *(*dmat), tree);
// Manipulate the root_gain so that I don't have to invent an actual // Manipulate the root_gain so that I don't have to invent an actual