Change reduce operation from thrust to cub. Fix for cuda 9.1 error (#3218)

* Change reduce operation from thrust to cub. Fix for cuda 9.1 runtime error

* Unit test sum reduce

src/common/device_helpers.cuh

@@ -797,6 +797,29 @@ void sumReduction(dh::CubMemory &tmp_mem, dh::dvec<T> &in, dh::dvec<T> &out,
                                        in.data(), out.data(), nVals));
 }
 
+/**
+* @brief Helper function to perform device-wide sum-reduction, returns to the
+* host
+* @param tmp_mem cub temporary memory info
+* @param in the input array to be reduced
+* @param nVals number of elements in the input array
+*/
+template <typename T>
+T sumReduction(dh::CubMemory &tmp_mem, T *in, int nVals) {
+  size_t tmpSize;
+  dh::safe_cuda(cub::DeviceReduce::Sum(nullptr, tmpSize, in, in, nVals));
+  // Allocate small extra memory for the return value
+  tmp_mem.LazyAllocate(tmpSize + sizeof(T));
+  auto ptr = reinterpret_cast<T *>(tmp_mem.d_temp_storage) + 1;
+  dh::safe_cuda(cub::DeviceReduce::Sum(
+    reinterpret_cast<void *>(ptr), tmpSize, in,
+    reinterpret_cast<T *>(tmp_mem.d_temp_storage), nVals));
+  T sum;
+  dh::safe_cuda(cudaMemcpy(&sum, tmp_mem.d_temp_storage, sizeof(T),
+    cudaMemcpyDeviceToHost));
+  return sum;
+}
+
 /**
  * @brief Fill a given constant value across all elements in the buffer
  * @param out the buffer to be filled

src/tree/updater_gpu_hist.cu

@@ -217,9 +217,11 @@ struct CalcWeightTrainParam {
   float max_delta_step;
   float learning_rate;
   __host__ __device__ CalcWeightTrainParam(const TrainParam& p)
-    : min_child_weight(p.min_child_weight), reg_alpha(p.reg_alpha),
-      reg_lambda(p.reg_lambda), max_delta_step(p.max_delta_step),
-      learning_rate(p.learning_rate) {}
+      : min_child_weight(p.min_child_weight),
+        reg_alpha(p.reg_alpha),
+        reg_lambda(p.reg_lambda),
+        max_delta_step(p.max_delta_step),
+        learning_rate(p.learning_rate) {}
 };
 
 // Manage memory for a single GPU
@@ -502,10 +504,9 @@ struct DeviceShard {
   void UpdatePredictionCache(bst_float* out_preds_d) {
     dh::safe_cuda(cudaSetDevice(device_idx));
     if (!prediction_cache_initialised) {
-      dh::safe_cuda(cudaMemcpy
-                    (prediction_cache.data(), &out_preds_d[row_begin_idx],
-                     prediction_cache.size() * sizeof(bst_float),
-                     cudaMemcpyDefault));
+      dh::safe_cuda(cudaMemcpy(
+          prediction_cache.data(), &out_preds_d[row_begin_idx],
+          prediction_cache.size() * sizeof(bst_float), cudaMemcpyDefault));
     }
     prediction_cache_initialised = true;
 
@@ -518,18 +519,17 @@ struct DeviceShard {
     auto d_node_sum_gradients = node_sum_gradients_d.data();
     auto d_prediction_cache = prediction_cache.data();
 
-    dh::launch_n(device_idx, prediction_cache.size(),
-                 [=] __device__(int local_idx) {
-                   int pos = d_position[local_idx];
-                   bst_float weight = CalcWeight(param_d, d_node_sum_gradients[pos]);
-                   d_prediction_cache[d_ridx[local_idx]] +=
-                     weight * param_d.learning_rate;
-                 });
+    dh::launch_n(
+        device_idx, prediction_cache.size(), [=] __device__(int local_idx) {
+          int pos = d_position[local_idx];
+          bst_float weight = CalcWeight(param_d, d_node_sum_gradients[pos]);
+          d_prediction_cache[d_ridx[local_idx]] +=
+              weight * param_d.learning_rate;
+        });
 
-    dh::safe_cuda(cudaMemcpy
-                  (&out_preds_d[row_begin_idx], prediction_cache.data(),
-                   prediction_cache.size() * sizeof(bst_float),
-                   cudaMemcpyDefault));
+    dh::safe_cuda(cudaMemcpy(
+        &out_preds_d[row_begin_idx], prediction_cache.data(),
+        prediction_cache.size() * sizeof(bst_float), cudaMemcpyDefault));
   }
 };
 
@@ -748,11 +748,10 @@ class GPUHistMaker : public TreeUpdater {
 #pragma omp parallel
     {
       auto cpu_thread_id = omp_get_thread_num();
-      dh::safe_cuda(cudaSetDevice(shards[cpu_thread_id]->device_idx));
-      tmp_sums[cpu_thread_id] =
-          thrust::reduce(thrust::cuda::par(shards[cpu_thread_id]->temp_memory),
-                         shards[cpu_thread_id]->gpair.tbegin(),
-                         shards[cpu_thread_id]->gpair.tend());
+      auto& shard = shards[cpu_thread_id];
+      dh::safe_cuda(cudaSetDevice(shard->device_idx));
+      tmp_sums[cpu_thread_id] = dh::sumReduction(
+          shard->temp_memory, shard->gpair.data(), shard->gpair.size());
     }
     auto sum_gradient =
         std::accumulate(tmp_sums.begin(), tmp_sums.end(), bst_gpair_precise());
@@ -909,15 +908,15 @@ class GPUHistMaker : public TreeUpdater {
     omp_set_num_threads(nthread);
   }
 
-  bool UpdatePredictionCache
-  (const DMatrix* data, HostDeviceVector<bst_float>* p_out_preds) override {
+  bool UpdatePredictionCache(
+      const DMatrix* data, HostDeviceVector<bst_float>* p_out_preds) override {
     monitor.Start("UpdatePredictionCache", dList);
     if (shards.empty() || p_last_fmat_ == nullptr || p_last_fmat_ != data)
       return false;
 
-    bst_float *out_preds_d = p_out_preds->ptr_d(param.gpu_id);
+    bst_float* out_preds_d = p_out_preds->ptr_d(param.gpu_id);
 
-    #pragma omp parallel for schedule(static, 1)
+#pragma omp parallel for schedule(static, 1)
     for (int shard = 0; shard < shards.size(); ++shard) {
       shards[shard]->UpdatePredictionCache(out_preds_d);
     }

tests/cpp/common/test_device_helpers.cu

@@ -5,8 +5,8 @@
 #include <thrust/device_vector.h>
 #include <xgboost/base.h>
 #include "../../../src/common/device_helpers.cuh"
-#include "gtest/gtest.h"
 #include "../../../src/common/timer.h"
+#include "gtest/gtest.h"
 
 void CreateTestData(xgboost::bst_uint num_rows, int max_row_size,
                     thrust::host_vector<int> *row_ptr,
@@ -38,7 +38,8 @@ void SpeedTest() {
 
   xgboost::common::Timer t;
   dh::TransformLbs(
-      0, &temp_memory, h_rows.size(), dh::raw(row_ptr), row_ptr.size() - 1, false,
+      0, &temp_memory, h_rows.size(), dh::raw(row_ptr), row_ptr.size() - 1,
+      false,
       [=] __device__(size_t idx, size_t ridx) { d_output_row[idx] = ridx; });
 
   dh::safe_cuda(cudaDeviceSynchronize());
@@ -76,4 +77,12 @@ void TestLbs() {
     }
   }
 }
+
 TEST(cub_lbs, Test) { TestLbs(); }
+
+TEST(sumReduce, Test) {
+  thrust::device_vector<float> data(100, 1.0f);
+  dh::CubMemory temp;
+  auto sum = dh::sumReduction(temp, dh::raw(data), data.size());
+  ASSERT_NEAR(sum, 100.0f, 1e-5);
+}

tests/cpp/metric/test_rank_metric.cc

@@ -39,7 +39,7 @@ TEST(Metric, AUCPR) {
               0.5f, 0.001f);
   EXPECT_NEAR(
       GetMetricEval(metric,
-                    {0.4f, 0.2f, 0.9f, 0.1f, 0.2f, 0.4f, 0.1f, 0.1f, 0.2f, 0.1},
+                    {0.4f, 0.2f, 0.9f, 0.1f, 0.2f, 0.4f, 0.1f, 0.1f, 0.2f, 0.1f},
                     {0, 0, 0, 0, 0, 1, 0, 0, 1, 1}),
       0.2908445f, 0.001f);
   EXPECT_NEAR(GetMetricEval(