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Fix CRAN check warnings/notes (#3988)

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* fix

* reorder declaration to match initialization
This commit is contained in:
Tong He
2018-12-12 06:23:20 -08:00
committed by Vadim Khotilovich
parent 4be5edaf92
commit 84a3af8dc0
8 changed files with 13 additions and 12 deletions
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2
R-package/R/xgb.plot.deepness.R
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@@ -27,7 +27,7 @@
#' a tree's median absolute leaf weight changes through the iterations.
#'
#' This function was inspired by the blog post
#' \url{http://aysent.github.io/2015/11/08/random-forest-leaf-visualization.html}.
#' \url{https://github.com/aysent/random-forest-leaf-visualization}.
#'
#' @return
#'

4
R-package/configure vendored
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@@ -1667,12 +1667,12 @@ OPENMP_CXXFLAGS=""
if test `uname -s` = "Linux"
then
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CFLAGS)"
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CXXFLAGS)"
fi
if test `uname -s` = "Darwin"
then
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CFLAGS)"
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CXXFLAGS)"
ac_pkg_openmp=no
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether OpenMP will work in a package" >&5
$as_echo_n "checking whether OpenMP will work in a package... " >&6; }

4
R-package/configure.ac
View File

@@ -8,12 +8,12 @@ OPENMP_CXXFLAGS=""
if test `uname -s` = "Linux"
then
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CFLAGS)"
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CXXFLAGS)"
fi
if test `uname -s` = "Darwin"
then
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CFLAGS)"
OPENMP_CXXFLAGS="\$(SHLIB_OPENMP_CXXFLAGS)"
ac_pkg_openmp=no
AC_MSG_CHECKING([whether OpenMP will work in a package])
AC_LANG_CONFTEST(

2
R-package/man/xgb.plot.deepness.Rd
View File

@@ -50,7 +50,7 @@ per tree with respect to tree number are created. And \code{which="med.weight"}
a tree's median absolute leaf weight changes through the iterations.
This function was inspired by the blog post
\url{http://aysent.github.io/2015/11/08/random-forest-leaf-visualization.html}.
\url{https://github.com/aysent/random-forest-leaf-visualization}.
}
\examples{

4
R-package/src/Makevars.in
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@@ -17,8 +17,8 @@ endif
$(foreach v, $(XGB_RFLAGS), $(warning $(v)))
PKG_CPPFLAGS= -I$(PKGROOT)/include -I$(PKGROOT)/dmlc-core/include -I$(PKGROOT)/rabit/include -I$(PKGROOT) $(XGB_RFLAGS)
PKG_CXXFLAGS= @OPENMP_CXXFLAGS@ $(SHLIB_PTHREAD_FLAGS)
PKG_LIBS = @OPENMP_CXXFLAGS@ $(SHLIB_PTHREAD_FLAGS)
PKG_CXXFLAGS= @OPENMP_CXXFLAGS@ -pthread
PKG_LIBS = @OPENMP_CXXFLAGS@ -pthread
OBJECTS= ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o\
$(PKGROOT)/amalgamation/xgboost-all0.o $(PKGROOT)/amalgamation/dmlc-minimum0.o\
$(PKGROOT)/rabit/src/engine_empty.o $(PKGROOT)/rabit/src/c_api.o

4
R-package/src/Makevars.win
View File

@@ -29,8 +29,8 @@ endif
$(foreach v, $(XGB_RFLAGS), $(warning $(v)))
PKG_CPPFLAGS= -I$(PKGROOT)/include -I$(PKGROOT)/dmlc-core/include -I$(PKGROOT)/rabit/include -I$(PKGROOT) $(XGB_RFLAGS)
PKG_CXXFLAGS= $(SHLIB_OPENMP_CFLAGS) $(SHLIB_PTHREAD_FLAGS)
PKG_LIBS = $(SHLIB_OPENMP_CFLAGS) $(SHLIB_PTHREAD_FLAGS)
PKG_CXXFLAGS= $(SHLIB_OPENMP_CXXFLAGS) $(SHLIB_PTHREAD_FLAGS)
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(SHLIB_PTHREAD_FLAGS)
OBJECTS= ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./init.o\
$(PKGROOT)/amalgamation/xgboost-all0.o $(PKGROOT)/amalgamation/dmlc-minimum0.o\
$(PKGROOT)/rabit/src/engine_empty.o $(PKGROOT)/rabit/src/c_api.o