70 lines
4.4 KiB
R
70 lines
4.4 KiB
R
% Generated by roxygen2 (4.1.0): do not edit by hand
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% Please edit documentation in R/xgb.importance.R
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\name{xgb.importance}
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\alias{xgb.importance}
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\title{Show importance of features in a model}
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\usage{
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xgb.importance(feature_names = NULL, filename_dump = NULL, model = NULL,
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data = NULL, label = NULL, target = function(x) ((x + label) == 2))
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}
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\arguments{
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\item{feature_names}{names of each feature as a character vector. Can be extracted from a sparse matrix (see example). If model dump already contains feature names, this argument should be \code{NULL}.}
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\item{filename_dump}{the path to the text file storing the model. Model dump must include the gain per feature and per tree (\code{with.stats = T} in function \code{xgb.dump}).}
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\item{model}{generated by the \code{xgb.train} function. Avoid the creation of a dump file.}
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\item{data}{the dataset used for the training step. Will be used with \code{label} parameter for co-occurence computation. More information in \code{Detail} part. This parameter is optional.}
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\item{label}{the label vetor used for the training step. Will be used with \code{data} parameter for co-occurence computation. More information in \code{Detail} part. This parameter is optional.}
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\item{target}{a function which returns \code{TRUE} or \code{1} when an observation should be count as a co-occurence and \code{FALSE} or \code{0} otherwise. Default function is provided for computing co-occurence between in a binary classification. The \code{target} function should have only one parameter (will be used to provide each important feature vector after applying the split condition on it). More information in \code{Detail} part. This parameter is optional.}
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}
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\value{
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A \code{data.table} of the features used in the model with their average gain (and their weight for boosted tree model) in the model.
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}
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\description{
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Read a xgboost model text dump.
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Can be tree or linear model (text dump of linear model are only supported in dev version of \code{Xgboost} for now).
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}
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\details{
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This is the function to understand the model trained (and through your model, your data).
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Results are returned for both linear and tree models.
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\code{data.table} is returned by the function.
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There are 3 columns :
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\itemize{
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\item \code{Features} name of the features as provided in \code{feature_names} or already present in the model dump.
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\item \code{Gain} contribution of each feature to the model. For boosted tree model, each gain of each feature of each tree is taken into account, then average per feature to give a vision of the entire model. Highest percentage means important feature to predict the \code{label} used for the training ;
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\item \code{Cover} metric of the number of observation related to this feature (only available for tree models) ;
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\item \code{Weight} percentage representing the relative number of times a feature have been taken into trees. \code{Gain} should be prefered to search the most important feature. For boosted linear model, this column has no meaning.
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}
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Co-occurence count
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The gain gives you indication about the information of how a feature is important in making a branch of a decision tree more pure. But, by itself, you can't know if this feature has to be present or not to get a specific classification. In the example code, you may wonder if odor=none should be \code{TRUE} to not eat a mushroom.
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Co-occurence computation is here to help in understanding this relation. It will counts how many observations have target function \code{TRUE}. In our example, there are 92 times only over the 3140 observations of the train dataset where a mushroom have no odor and can be eaten safely.
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If you need to remember one thing of all of this: until you want to leave us early, don't eat a mushroom which has no odor :-)
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}
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\examples{
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data(agaricus.train, package='xgboost')
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# Both dataset are list with two items, a sparse matrix and labels
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# (labels = outcome column which will be learned).
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# Each column of the sparse Matrix is a feature in one hot encoding format.
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train <- agaricus.train
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bst <- xgboost(data = train$data, label = train$label, max.depth = 2,
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eta = 1, nround = 2,objective = "binary:logistic")
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# train$data@Dimnames[[2]] represents the column names of the sparse matrix.
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xgb.importance(train$data@Dimnames[[2]], model = bst)
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# Same thing with co-occurence computation this time
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xgb.importance(train$data@Dimnames[[2]], model = bst, data = train$data, label = train$label)
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}
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