xgboost/tests/cpp/predictor/test_gpu_predictor.cu
Jiaming Yuan 142bdc73ec
[EM] Support SHAP contribution with QDM. (#10724)
- Add GPU support.
- Add external memory support.
- Update the GPU tree shap.
2024-08-22 05:25:10 +08:00

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/**
* Copyright 2017-2024, XGBoost contributors
*/
#include <gtest/gtest.h>
#include <xgboost/c_api.h>
#include <xgboost/learner.h>
#include <xgboost/logging.h>
#include <xgboost/predictor.h>
#include <string>
#include "../../../src/data/device_adapter.cuh"
#include "../../../src/data/proxy_dmatrix.h"
#include "../../../src/gbm/gbtree_model.h"
#include "../collective/test_worker.h" // for TestDistributedGlobal, BaseMGPUTest
#include "../helpers.h"
#include "test_predictor.h"
namespace xgboost::predictor {
TEST(GPUPredictor, Basic) {
auto cpu_lparam = MakeCUDACtx(-1);
auto gpu_lparam = MakeCUDACtx(0);
std::unique_ptr<Predictor> gpu_predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", &gpu_lparam));
std::unique_ptr<Predictor> cpu_predictor =
std::unique_ptr<Predictor>(Predictor::Create("cpu_predictor", &cpu_lparam));
gpu_predictor->Configure({});
cpu_predictor->Configure({});
for (size_t i = 1; i < 33; i *= 2) {
int n_row = i, n_col = i;
auto dmat = RandomDataGenerator(n_row, n_col, 0).GenerateDMatrix();
auto ctx = MakeCUDACtx(0);
LearnerModelParam mparam{MakeMP(n_col, .5, 1, ctx.Device())};
gbm::GBTreeModel model = CreateTestModel(&mparam, &ctx);
// Test predict batch
PredictionCacheEntry gpu_out_predictions;
PredictionCacheEntry cpu_out_predictions;
gpu_predictor->InitOutPredictions(dmat->Info(), &gpu_out_predictions.predictions, model);
gpu_predictor->PredictBatch(dmat.get(), &gpu_out_predictions, model, 0);
cpu_predictor->InitOutPredictions(dmat->Info(), &cpu_out_predictions.predictions, model);
cpu_predictor->PredictBatch(dmat.get(), &cpu_out_predictions, model, 0);
std::vector<float>& gpu_out_predictions_h = gpu_out_predictions.predictions.HostVector();
std::vector<float>& cpu_out_predictions_h = cpu_out_predictions.predictions.HostVector();
float abs_tolerance = 0.001;
for (size_t j = 0; j < gpu_out_predictions.predictions.Size(); j++) {
ASSERT_NEAR(gpu_out_predictions_h[j], cpu_out_predictions_h[j], abs_tolerance);
}
}
}
namespace {
void VerifyBasicColumnSplit(std::array<std::vector<float>, 32> const& expected_result) {
auto const world_size = collective::GetWorldSize();
auto const rank = collective::GetRank();
auto ctx = MakeCUDACtx(GPUIDX);
std::unique_ptr<Predictor> predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", &ctx));
predictor->Configure({});
for (size_t i = 1; i < 33; i *= 2) {
size_t n_row = i, n_col = i;
auto dmat = RandomDataGenerator(n_row, n_col, 0).GenerateDMatrix();
std::unique_ptr<DMatrix> sliced{dmat->SliceCol(world_size, rank)};
LearnerModelParam mparam{MakeMP(n_col, .5, 1, ctx.Device())};
gbm::GBTreeModel model = CreateTestModel(&mparam, &ctx);
// Test predict batch
PredictionCacheEntry out_predictions;
predictor->InitOutPredictions(sliced->Info(), &out_predictions.predictions, model);
predictor->PredictBatch(sliced.get(), &out_predictions, model, 0);
std::vector<float>& out_predictions_h = out_predictions.predictions.HostVector();
EXPECT_EQ(out_predictions_h, expected_result[i - 1]);
}
}
} // anonymous namespace
class MGPUPredictorTest : public collective::BaseMGPUTest {};
TEST_F(MGPUPredictorTest, BasicColumnSplit) {
auto ctx = MakeCUDACtx(0);
std::unique_ptr<Predictor> predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", &ctx));
predictor->Configure({});
std::array<std::vector<float>, 32> result{};
for (size_t i = 1; i < 33; i *= 2) {
size_t n_row = i, n_col = i;
auto dmat = RandomDataGenerator(n_row, n_col, 0).GenerateDMatrix();
LearnerModelParam mparam{MakeMP(n_col, .5, 1, ctx.Device())};
gbm::GBTreeModel model = CreateTestModel(&mparam, &ctx);
// Test predict batch
PredictionCacheEntry out_predictions;
predictor->InitOutPredictions(dmat->Info(), &out_predictions.predictions, model);
predictor->PredictBatch(dmat.get(), &out_predictions, model, 0);
std::vector<float>& out_predictions_h = out_predictions.predictions.HostVector();
result[i - 1] = out_predictions_h;
}
this->DoTest([&] { VerifyBasicColumnSplit(result); }, true);
this->DoTest([&] { VerifyBasicColumnSplit(result); }, false);
}
TEST(GPUPredictor, EllpackBasic) {
size_t constexpr kCols{8};
auto ctx = MakeCUDACtx(0);
for (size_t bins = 2; bins < 258; bins += 16) {
size_t rows = bins * 16;
auto p_m = RandomDataGenerator{rows, kCols, 0.0}
.Bins(bins)
.Device(ctx.Device())
.GenerateQuantileDMatrix(false);
ASSERT_FALSE(p_m->PageExists<SparsePage>());
TestPredictionFromGradientIndex<EllpackPage>(&ctx, rows, kCols, p_m);
TestPredictionFromGradientIndex<EllpackPage>(&ctx, bins, kCols, p_m);
}
}
TEST(GPUPredictor, EllpackTraining) {
auto ctx = MakeCUDACtx(0);
size_t constexpr kRows{128}, kCols{16}, kBins{64};
auto p_ellpack = RandomDataGenerator{kRows, kCols, 0.0}
.Bins(kBins)
.Device(ctx.Device())
.GenerateQuantileDMatrix(false);
HostDeviceVector<float> storage(kRows * kCols);
auto columnar =
RandomDataGenerator{kRows, kCols, 0.0}.Device(ctx.Device()).GenerateArrayInterface(&storage);
auto adapter = data::CupyAdapter(columnar);
std::shared_ptr<DMatrix> p_full{
DMatrix::Create(&adapter, std::numeric_limits<float>::quiet_NaN(), 1)};
TestTrainingPrediction(&ctx, kRows, kBins, p_full, p_ellpack);
}
namespace {
template <typename Create>
void TestDecisionStumpExternalMemory(Context const* ctx, bst_feature_t n_features,
Create create_fn) {
std::int32_t n_classes = 3;
LearnerModelParam mparam{MakeMP(n_features, .5, n_classes, ctx->Device())};
auto model = CreateTestModel(&mparam, ctx, n_classes);
std::unique_ptr<Predictor> gpu_predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", ctx));
gpu_predictor->Configure({});
for (auto p_fmat : {create_fn(400), create_fn(800), create_fn(2048)}) {
p_fmat->Info().base_margin_ = linalg::Constant(ctx, 0.5f, p_fmat->Info().num_row_, n_classes);
PredictionCacheEntry out_predictions;
gpu_predictor->InitOutPredictions(p_fmat->Info(), &out_predictions.predictions, model);
gpu_predictor->PredictBatch(p_fmat.get(), &out_predictions, model, 0);
ASSERT_EQ(out_predictions.predictions.Size(), p_fmat->Info().num_row_ * n_classes);
auto const& h_predt = out_predictions.predictions.ConstHostVector();
for (size_t i = 0; i < h_predt.size() / n_classes; i++) {
ASSERT_EQ(h_predt[i * n_classes], 2.0);
ASSERT_EQ(h_predt[i * n_classes + 1], 0.5);
ASSERT_EQ(h_predt[i * n_classes + 2], 0.5);
}
}
}
} // namespace
TEST(GPUPredictor, ExternalMemory) {
auto ctx = MakeCUDACtx(0);
bst_bin_t max_bin = 128;
bst_feature_t n_features = 32;
TestDecisionStumpExternalMemory(&ctx, n_features, [&](bst_idx_t n_samples) {
return RandomDataGenerator{n_samples, n_features, 0.0f}
.Batches(4)
.Device(ctx.Device())
.Bins(max_bin)
.GenerateSparsePageDMatrix("temp", false);
});
TestDecisionStumpExternalMemory(&ctx, n_features, [&](bst_idx_t n_samples) {
return RandomDataGenerator{n_samples, n_features, 0.0f}
.Batches(4)
.Device(ctx.Device())
.Bins(max_bin)
.GenerateExtMemQuantileDMatrix("temp", false);
});
}
TEST(GPUPredictor, InplacePredictCupy) {
auto ctx = MakeCUDACtx(0);
size_t constexpr kRows{128}, kCols{64};
RandomDataGenerator gen(kRows, kCols, 0.5);
gen.Device(ctx.Device());
HostDeviceVector<float> data;
std::string interface_str = gen.GenerateArrayInterface(&data);
std::shared_ptr<DMatrix> p_fmat{new data::DMatrixProxy};
dynamic_cast<data::DMatrixProxy*>(p_fmat.get())->SetCUDAArray(interface_str.c_str());
TestInplacePrediction(&ctx, p_fmat, kRows, kCols);
}
TEST(GPUPredictor, InplacePredictCuDF) {
auto ctx = MakeCUDACtx(0);
size_t constexpr kRows{128}, kCols{64};
RandomDataGenerator gen(kRows, kCols, 0.5);
gen.Device(ctx.Device());
std::vector<HostDeviceVector<float>> storage(kCols);
auto interface_str = gen.GenerateColumnarArrayInterface(&storage);
std::shared_ptr<DMatrix> p_fmat{new data::DMatrixProxy};
dynamic_cast<data::DMatrixProxy*>(p_fmat.get())->SetCUDAArray(interface_str.c_str());
TestInplacePrediction(&ctx, p_fmat, kRows, kCols);
}
TEST(GpuPredictor, LesserFeatures) {
auto ctx = MakeCUDACtx(0);
TestPredictionWithLesserFeatures(&ctx);
}
TEST_F(MGPUPredictorTest, LesserFeaturesColumnSplit) {
this->DoTest([] { TestPredictionWithLesserFeaturesColumnSplit(true); }, true);
this->DoTest([] { TestPredictionWithLesserFeaturesColumnSplit(true); }, false);
}
// Very basic test of empty model
TEST(GPUPredictor, ShapStump) {
cudaSetDevice(0);
auto ctx = MakeCUDACtx(0);
LearnerModelParam mparam{MakeMP(1, .5, 1, ctx.Device())};
gbm::GBTreeModel model(&mparam, &ctx);
std::vector<std::unique_ptr<RegTree>> trees;
trees.push_back(std::make_unique<RegTree>());
model.CommitModelGroup(std::move(trees), 0);
auto gpu_lparam = MakeCUDACtx(0);
std::unique_ptr<Predictor> gpu_predictor = std::unique_ptr<Predictor>(
Predictor::Create("gpu_predictor", &gpu_lparam));
gpu_predictor->Configure({});
HostDeviceVector<float> predictions;
auto dmat = RandomDataGenerator(3, 1, 0).GenerateDMatrix();
gpu_predictor->PredictContribution(dmat.get(), &predictions, model);
auto& phis = predictions.HostVector();
auto base_score = mparam.BaseScore(DeviceOrd::CPU())(0);
EXPECT_EQ(phis[0], 0.0);
EXPECT_EQ(phis[1], base_score);
EXPECT_EQ(phis[2], 0.0);
EXPECT_EQ(phis[3], base_score);
EXPECT_EQ(phis[4], 0.0);
EXPECT_EQ(phis[5], base_score);
}
TEST(GPUPredictor, Shap) {
auto ctx = MakeCUDACtx(0);
LearnerModelParam mparam{MakeMP(1, .5, 1, ctx.Device())};
gbm::GBTreeModel model(&mparam, &ctx);
std::vector<std::unique_ptr<RegTree>> trees;
trees.push_back(std::make_unique<RegTree>());
trees[0]->ExpandNode(0, 0, 0.5, true, 1.0, -1.0, 1.0, 0.0, 5.0, 2.0, 3.0);
model.CommitModelGroup(std::move(trees), 0);
auto cpu_lparam = MakeCUDACtx(-1);
std::unique_ptr<Predictor> gpu_predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", &ctx));
std::unique_ptr<Predictor> cpu_predictor = std::unique_ptr<Predictor>(
Predictor::Create("cpu_predictor", &cpu_lparam));
gpu_predictor->Configure({});
cpu_predictor->Configure({});
HostDeviceVector<float> predictions;
HostDeviceVector<float> cpu_predictions;
auto dmat = RandomDataGenerator(3, 1, 0).GenerateDMatrix();
gpu_predictor->PredictContribution(dmat.get(), &predictions, model);
cpu_predictor->PredictContribution(dmat.get(), &cpu_predictions, model);
auto& phis = predictions.HostVector();
auto& cpu_phis = cpu_predictions.HostVector();
for (auto i = 0ull; i < phis.size(); i++) {
EXPECT_NEAR(cpu_phis[i], phis[i], 1e-3);
}
}
TEST_P(ShapExternalMemoryTest, GPUPredictor) {
auto ctx = MakeCUDACtx(0);
auto [is_qdm, is_interaction] = this->GetParam();
this->Run(&ctx, is_qdm, is_interaction);
}
TEST(GPUPredictor, IterationRange) {
auto ctx = MakeCUDACtx(0);
TestIterationRange(&ctx);
}
TEST_F(MGPUPredictorTest, IterationRangeColumnSplit) {
TestIterationRangeColumnSplit(common::AllVisibleGPUs(), true);
}
TEST(GPUPredictor, CategoricalPrediction) {
TestCategoricalPrediction(true, false);
}
TEST_F(MGPUPredictorTest, CategoricalPredictionColumnSplit) {
this->DoTest([] { TestCategoricalPrediction(true, true); }, true);
this->DoTest([] { TestCategoricalPrediction(true, true); }, false);
}
TEST(GPUPredictor, CategoricalPredictLeaf) {
auto ctx = MakeCUDACtx(common::AllVisibleGPUs() == 1 ? 0 : collective::GetRank());
TestCategoricalPredictLeaf(&ctx, false);
}
TEST_F(MGPUPredictorTest, CategoricalPredictionLeafColumnSplit) {
this->DoTest(
[&] {
auto ctx = MakeCUDACtx(collective::GetRank());
TestCategoricalPredictLeaf(&ctx, true);
},
true);
this->DoTest(
[&] {
auto ctx = MakeCUDACtx(collective::GetRank());
TestCategoricalPredictLeaf(&ctx, true);
},
false);
}
TEST(GPUPredictor, PredictLeafBasic) {
size_t constexpr kRows = 5, kCols = 5;
auto dmat = RandomDataGenerator(kRows, kCols, 0).Device(DeviceOrd::CUDA(0)).GenerateDMatrix();
auto lparam = MakeCUDACtx(GPUIDX);
std::unique_ptr<Predictor> gpu_predictor =
std::unique_ptr<Predictor>(Predictor::Create("gpu_predictor", &lparam));
gpu_predictor->Configure({});
LearnerModelParam mparam{MakeMP(kCols, .0, 1)};
Context ctx;
gbm::GBTreeModel model = CreateTestModel(&mparam, &ctx);
HostDeviceVector<float> leaf_out_predictions;
gpu_predictor->PredictLeaf(dmat.get(), &leaf_out_predictions, model);
auto const& h_leaf_out_predictions = leaf_out_predictions.ConstHostVector();
for (auto v : h_leaf_out_predictions) {
ASSERT_EQ(v, 0);
}
}
TEST(GPUPredictor, Sparse) {
auto ctx = MakeCUDACtx(0);
TestSparsePrediction(&ctx, 0.2);
TestSparsePrediction(&ctx, 0.8);
}
TEST_F(MGPUPredictorTest, SparseColumnSplit) {
TestSparsePredictionColumnSplit(common::AllVisibleGPUs(), true, 0.2);
TestSparsePredictionColumnSplit(common::AllVisibleGPUs(), true, 0.8);
}
} // namespace xgboost::predictor