xgboost/tests/travis/run_test.sh
Scott Lundberg d878c36c84 Add SHAP interaction effects, fix minor bug, and add cox loss (#3043)
* Add interaction effects and cox loss

* Minimize whitespace changes

* Cox loss now no longer needs a pre-sorted dataset.

* Address code review comments

* Remove mem check, rename to pred_interactions, include bias

* Make lint happy

* More lint fixes

* Fix cox loss indexing

* Fix main effects and tests

* Fix lint

* Use half interaction values on the off-diagonals

* Fix lint again
2018-02-07 20:38:01 -06:00

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#!/bin/bash
if [ ${TASK} == "lint" ]; then
make lint || exit -1
echo "Check documentations..."
make doxygen 2>log.txt
(cat log.txt| grep -v ENABLE_PREPROCESSING |grep -v "unsupported tag") > logclean.txt
echo "---------Error Log----------"
cat logclean.txt
echo "----------------------------"
(cat logclean.txt|grep warning) && exit -1
(cat logclean.txt|grep error) && exit -1
exit 0
fi
cp make/travis.mk config.mk
make -f dmlc-core/scripts/packages.mk lz4
if [ ${TRAVIS_OS_NAME} == "osx" ]; then
echo 'USE_OPENMP=0' >> config.mk
echo 'TMPVAR := $(XGB_PLUGINS)' >> config.mk
echo 'XGB_PLUGINS = $(filter-out plugin/lz4/plugin.mk, $(TMPVAR))' >> config.mk
else
# use g++-4.8 for linux
export CXX=g++-4.8
fi
if [ ${TASK} == "python_test" ]; then
make all || exit -1
echo "-------------------------------"
source activate python3
python --version
conda install numpy scipy pandas matplotlib nose scikit-learn
python -m pip install graphviz pytest pytest-cov codecov
python -m nose tests/python || exit -1
py.test tests/python --cov=python-package/xgboost
codecov
source activate python2
echo "-------------------------------"
python --version
conda install numpy scipy pandas matplotlib nose scikit-learn
python -m pip install graphviz
python -m nose tests/python || exit -1
exit 0
fi
if [ ${TASK} == "python_lightweight_test" ]; then
make all || exit -1
echo "-------------------------------"
source activate python3
python --version
conda install numpy scipy nose
python -m pip install graphviz pytest pytest-cov codecov
python -m nose tests/python || exit -1
py.test tests/python --cov=python-package/xgboost
codecov
source activate python2
echo "-------------------------------"
python --version
conda install numpy scipy nose
python -m pip install graphviz
python -m nose tests/python || exit -1
python -m pip install flake8==3.4.1
flake8 --ignore E501 python-package || exit -1
flake8 --ignore E501 tests/python || exit -1
exit 0
fi
if [ ${TASK} == "r_test" ]; then
set -e
export _R_CHECK_TIMINGS_=0
export R_BUILD_ARGS="--no-build-vignettes --no-manual"
export R_CHECK_ARGS="--no-vignettes --no-manual"
curl -OL http://raw.github.com/craigcitro/r-travis/master/scripts/travis-tool.sh
chmod 755 ./travis-tool.sh
./travis-tool.sh bootstrap
make Rpack
cd ./xgboost
../travis-tool.sh install_deps
../travis-tool.sh run_tests
exit 0
fi
if [ ${TASK} == "java_test" ]; then
set -e
cd jvm-packages
mvn -q clean install -DskipTests -Dmaven.test.skip
mvn -q test
fi
if [ ${TASK} == "cmake_test" ]; then
set -e
# Build gtest via cmake
wget https://github.com/google/googletest/archive/release-1.7.0.zip
unzip release-1.7.0.zip
mv googletest-release-1.7.0 gtest && cd gtest
cmake . && make
mkdir lib && mv libgtest.a lib
cd ..
rm -rf release-1.7.0.zip
# Build/test without AVX
mkdir build && cd build
cmake .. -DGOOGLE_TEST=ON
make
cd ..
./testxgboost
rm -rf build
# Build/test with AVX
mkdir build && cd build
cmake .. -DGOOGLE_TEST=ON -DUSE_AVX=ON
make
cd ..
./testxgboost
fi
if [ ${TASK} == "cpp_test" ]; then
set -e
make -f dmlc-core/scripts/packages.mk gtest
echo "TEST_COVER=1" >> config.mk
echo "GTEST_PATH="${CACHE_PREFIX} >> config.mk
make cover
fi