xgboost/src/data/gradient_index_format.cc
Jiaming Yuan 4d81c741e9
External memory support for hist (#7531)
* Generate column matrix from gHistIndex.
* Avoid synchronization with the sparse page once the cache is written.
* Cleanups: Remove member variables/functions, change the update routine to look like approx and gpu_hist.
* Remove pruner.
2022-03-22 00:13:20 +08:00

99 lines
2.8 KiB
C++

/*!
* Copyright 2021-2022 XGBoost contributors
*/
#include "sparse_page_writer.h"
#include "gradient_index.h"
#include "histogram_cut_format.h"
namespace xgboost {
namespace data {
class GHistIndexRawFormat : public SparsePageFormat<GHistIndexMatrix> {
public:
bool Read(GHistIndexMatrix* page, dmlc::SeekStream* fi) override {
if (!ReadHistogramCuts(&page->cut, fi)) {
return false;
}
// indptr
fi->Read(&page->row_ptr);
// data
std::vector<uint8_t> data;
if (!fi->Read(&data)) {
return false;
}
page->index.Resize(data.size());
std::copy(data.cbegin(), data.cend(), page->index.begin());
// bin type
// Old gcc doesn't support reading from enum.
std::underlying_type_t<common::BinTypeSize> uint_bin_type{0};
if (!fi->Read(&uint_bin_type)) {
return false;
}
common::BinTypeSize size_type =
static_cast<common::BinTypeSize>(uint_bin_type);
page->index.SetBinTypeSize(size_type);
// hit count
if (!fi->Read(&page->hit_count)) {
return false;
}
if (!fi->Read(&page->max_num_bins)) {
return false;
}
if (!fi->Read(&page->base_rowid)) {
return false;
}
bool is_dense = false;
if (!fi->Read(&is_dense)) {
return false;
}
page->SetDense(is_dense);
if (is_dense) {
page->index.SetBinOffset(page->cut.Ptrs());
}
page->ReadColumnPage(fi);
return true;
}
size_t Write(GHistIndexMatrix const &page, dmlc::Stream *fo) override {
size_t bytes = 0;
bytes += WriteHistogramCuts(page.cut, fo);
// indptr
fo->Write(page.row_ptr);
bytes += page.row_ptr.size() * sizeof(decltype(page.row_ptr)::value_type) +
sizeof(uint64_t);
// data
std::vector<uint8_t> data(page.index.begin(), page.index.end());
fo->Write(data);
bytes += data.size() * sizeof(decltype(data)::value_type) + sizeof(uint64_t);
// bin type
std::underlying_type_t<common::BinTypeSize> uint_bin_type =
page.index.GetBinTypeSize();
fo->Write(uint_bin_type);
bytes += sizeof(page.index.GetBinTypeSize());
// hit count
fo->Write(page.hit_count);
bytes +=
page.hit_count.size() * sizeof(decltype(page.hit_count)::value_type) +
sizeof(uint64_t);
// max_bins, base row, is_dense
fo->Write(page.max_num_bins);
bytes += sizeof(page.max_num_bins);
fo->Write(page.base_rowid);
bytes += sizeof(page.base_rowid);
fo->Write(page.IsDense());
bytes += sizeof(page.IsDense());
bytes += page.WriteColumnPage(fo);
return bytes;
}
};
DMLC_REGISTRY_FILE_TAG(gradient_index_format);
XGBOOST_REGISTER_GHIST_INDEX_PAGE_FORMAT(raw)
.describe("Raw GHistIndex binary data format.")
.set_body([]() { return new GHistIndexRawFormat(); });
} // namespace data
} // namespace xgboost