xgboost/src/gbm/gbtree.h
2023-03-27 18:54:41 +02:00

438 lines
16 KiB
C++

/**
* Copyright 2014-2023 by Contributors
* \file gbtree.cc
* \brief gradient boosted tree implementation.
* \author Tianqi Chen
*/
#ifndef XGBOOST_GBM_GBTREE_H_
#define XGBOOST_GBM_GBTREE_H_
#include <dmlc/omp.h>
#include <algorithm>
#include <cstdint> // std::int32_t
#include <map>
#include <memory>
#include <string>
#include <unordered_map>
#include <utility>
#include <vector>
#include "../common/common.h"
#include "../common/timer.h"
#include "../tree/param.h" // TrainParam
#include "gbtree_model.h"
#include "xgboost/base.h"
#include "xgboost/data.h"
#include "xgboost/gbm.h"
#include "xgboost/host_device_vector.h"
#include "xgboost/json.h"
#include "xgboost/logging.h"
#include "xgboost/parameter.h"
#include "xgboost/predictor.h"
#include "xgboost/tree_updater.h"
namespace xgboost {
enum class TreeMethod : int {
kAuto = 0, kApprox = 1, kExact = 2, kHist = 3,
kGPUHist = 5
};
// boosting process types
enum class TreeProcessType : int {
kDefault = 0,
kUpdate = 1
};
enum class PredictorType : int {
kAuto = 0,
kCPUPredictor,
kGPUPredictor,
kOneAPIPredictor
};
} // namespace xgboost
DECLARE_FIELD_ENUM_CLASS(xgboost::TreeMethod);
DECLARE_FIELD_ENUM_CLASS(xgboost::TreeProcessType);
DECLARE_FIELD_ENUM_CLASS(xgboost::PredictorType);
namespace xgboost {
namespace gbm {
/*! \brief training parameters */
struct GBTreeTrainParam : public XGBoostParameter<GBTreeTrainParam> {
/*! \brief tree updater sequence */
std::string updater_seq;
/*! \brief type of boosting process to run */
TreeProcessType process_type;
// predictor type
PredictorType predictor;
// tree construction method
TreeMethod tree_method;
// declare parameters
DMLC_DECLARE_PARAMETER(GBTreeTrainParam) {
DMLC_DECLARE_FIELD(updater_seq)
.set_default("grow_colmaker,prune")
.describe("Tree updater sequence.");
DMLC_DECLARE_FIELD(process_type)
.set_default(TreeProcessType::kDefault)
.add_enum("default", TreeProcessType::kDefault)
.add_enum("update", TreeProcessType::kUpdate)
.describe("Whether to run the normal boosting process that creates new trees,"\
" or to update the trees in an existing model.");
DMLC_DECLARE_ALIAS(updater_seq, updater);
DMLC_DECLARE_FIELD(predictor)
.set_default(PredictorType::kAuto)
.add_enum("auto", PredictorType::kAuto)
.add_enum("cpu_predictor", PredictorType::kCPUPredictor)
.add_enum("gpu_predictor", PredictorType::kGPUPredictor)
.add_enum("oneapi_predictor", PredictorType::kOneAPIPredictor)
.describe("Predictor algorithm type");
DMLC_DECLARE_FIELD(tree_method)
.set_default(TreeMethod::kAuto)
.add_enum("auto", TreeMethod::kAuto)
.add_enum("approx", TreeMethod::kApprox)
.add_enum("exact", TreeMethod::kExact)
.add_enum("hist", TreeMethod::kHist)
.add_enum("gpu_hist", TreeMethod::kGPUHist)
.describe("Choice of tree construction method.");
}
};
/*! \brief training parameters */
struct DartTrainParam : public XGBoostParameter<DartTrainParam> {
/*! \brief type of sampling algorithm */
int sample_type;
/*! \brief type of normalization algorithm */
int normalize_type;
/*! \brief fraction of trees to drop during the dropout */
float rate_drop;
/*! \brief whether at least one tree should always be dropped during the dropout */
bool one_drop;
/*! \brief probability of skipping the dropout during an iteration */
float skip_drop;
// declare parameters
DMLC_DECLARE_PARAMETER(DartTrainParam) {
DMLC_DECLARE_FIELD(sample_type)
.set_default(0)
.add_enum("uniform", 0)
.add_enum("weighted", 1)
.describe("Different types of sampling algorithm.");
DMLC_DECLARE_FIELD(normalize_type)
.set_default(0)
.add_enum("tree", 0)
.add_enum("forest", 1)
.describe("Different types of normalization algorithm.");
DMLC_DECLARE_FIELD(rate_drop)
.set_range(0.0f, 1.0f)
.set_default(0.0f)
.describe("Fraction of trees to drop during the dropout.");
DMLC_DECLARE_FIELD(one_drop)
.set_default(false)
.describe("Whether at least one tree should always be dropped during the dropout.");
DMLC_DECLARE_FIELD(skip_drop)
.set_range(0.0f, 1.0f)
.set_default(0.0f)
.describe("Probability of skipping the dropout during a boosting iteration.");
}
};
namespace detail {
// From here on, layer becomes concrete trees.
inline std::pair<bst_tree_t, bst_tree_t> LayerToTree(gbm::GBTreeModel const& model,
bst_layer_t begin, bst_layer_t end) {
CHECK(!model.iteration_indptr.empty());
end = end == 0 ? model.BoostedRounds() : end;
CHECK_LE(end, model.BoostedRounds()) << "Out of range for tree layers.";
bst_tree_t tree_begin = model.iteration_indptr[begin];
bst_tree_t tree_end = model.iteration_indptr[end];
if (model.trees.size() != 0) {
CHECK_LE(tree_begin, tree_end);
}
return {tree_begin, tree_end};
}
// Call fn for each pair of input output tree. Return true if index is out of bound.
template <typename Func>
bool SliceTrees(bst_layer_t begin, bst_layer_t end, bst_layer_t step, GBTreeModel const& model,
Func&& fn) {
end = end == 0 ? model.iteration_indptr.size() : end;
CHECK_GE(step, 1);
if (step > end - begin) {
return true;
}
if (end > model.BoostedRounds()) {
return true;
}
bst_layer_t n_layers = (end - begin) / step;
bst_layer_t out_l = 0;
for (bst_layer_t l = begin; l < end; l += step) {
auto [tree_begin, tree_end] = detail::LayerToTree(model, l, l + 1);
if (tree_end > static_cast<bst_tree_t>(model.trees.size())) {
return true;
}
for (bst_tree_t tree_idx = tree_begin; tree_idx < tree_end; ++tree_idx) {
fn(tree_idx, out_l);
}
++out_l;
}
CHECK_EQ(out_l, n_layers);
return false;
}
} // namespace detail
// gradient boosted trees
class GBTree : public GradientBooster {
public:
explicit GBTree(LearnerModelParam const* booster_config, Context const* ctx)
: GradientBooster{ctx}, model_(booster_config, ctx_) {}
void Configure(const Args& cfg) override;
// Revise `tree_method` and `updater` parameters after seeing the training
// data matrix, only useful when tree_method is auto.
void PerformTreeMethodHeuristic(DMatrix* fmat);
/*! \brief Map `tree_method` parameter to `updater` parameter */
void ConfigureUpdaters();
void ConfigureWithKnownData(Args const& cfg, DMatrix* fmat);
/**
* \brief Optionally update the leaf value.
*/
void UpdateTreeLeaf(DMatrix const* p_fmat, HostDeviceVector<float> const& predictions,
ObjFunction const* obj,
std::int32_t group_idx,
std::vector<HostDeviceVector<bst_node_t>> const& node_position,
std::vector<std::unique_ptr<RegTree>>* p_trees);
/*! \brief Carry out one iteration of boosting */
void DoBoost(DMatrix* p_fmat, HostDeviceVector<GradientPair>* in_gpair,
PredictionCacheEntry* predt, ObjFunction const* obj) override;
bool UseGPU() const override {
return
tparam_.predictor == PredictorType::kGPUPredictor ||
tparam_.tree_method == TreeMethod::kGPUHist;
}
GBTreeTrainParam const& GetTrainParam() const {
return tparam_;
}
void Load(dmlc::Stream* fi) override {
model_.Load(fi);
this->cfg_.clear();
}
void Save(dmlc::Stream* fo) const override {
model_.Save(fo);
}
void LoadConfig(Json const& in) override;
void SaveConfig(Json* p_out) const override;
void SaveModel(Json* p_out) const override;
void LoadModel(Json const& in) override;
// slice the trees, out must be already allocated
void Slice(bst_layer_t begin, bst_layer_t end, bst_layer_t step, GradientBooster* out,
bool* out_of_bound) const override;
[[nodiscard]] std::int32_t BoostedRounds() const override { return this->model_.BoostedRounds(); }
[[nodiscard]] bool ModelFitted() const override {
return !model_.trees.empty() || !model_.trees_to_update.empty();
}
void PredictBatch(DMatrix* p_fmat, PredictionCacheEntry* out_preds, bool training,
bst_layer_t layer_begin, bst_layer_t layer_end) override;
void InplacePredict(std::shared_ptr<DMatrix> p_m, float missing, PredictionCacheEntry* out_preds,
bst_layer_t layer_begin, bst_layer_t layer_end) const override {
CHECK(configured_);
auto [tree_begin, tree_end] = detail::LayerToTree(model_, layer_begin, layer_end);
CHECK_LE(tree_end, model_.trees.size()) << "Invalid number of trees.";
std::vector<Predictor const *> predictors{
cpu_predictor_.get(),
#if defined(XGBOOST_USE_CUDA) || defined(XGBOOST_USE_HIP)
gpu_predictor_.get()
#endif // defined(XGBOOST_USE_CUDA) || defined(XGBOOST_USE_HIP)
};
StringView msg{"Unsupported data type for inplace predict."};
if (tparam_.predictor == PredictorType::kAuto) {
// Try both predictor implementations
for (auto const &p : predictors) {
if (p && p->InplacePredict(p_m, model_, missing, out_preds, tree_begin, tree_end)) {
return;
}
}
LOG(FATAL) << msg;
} else {
bool success = this->GetPredictor()->InplacePredict(p_m, model_, missing, out_preds,
tree_begin, tree_end);
CHECK(success) << msg << std::endl
<< "Current Predictor: "
<< (tparam_.predictor == PredictorType::kCPUPredictor
? "cpu_predictor"
: "gpu_predictor");
}
}
void FeatureScore(std::string const& importance_type, common::Span<int32_t const> trees,
std::vector<bst_feature_t>* features,
std::vector<float>* scores) const override {
// Because feature with no importance doesn't appear in the return value so
// we need to set up another pair of vectors to store the values during
// computation.
std::vector<size_t> split_counts(this->model_.learner_model_param->num_feature, 0);
std::vector<float> gain_map(this->model_.learner_model_param->num_feature, 0);
std::vector<int32_t> tree_idx;
if (trees.empty()) {
tree_idx.resize(this->model_.trees.size());
std::iota(tree_idx.begin(), tree_idx.end(), 0);
trees = common::Span<int32_t const>(tree_idx);
}
auto total_n_trees = model_.trees.size();
auto add_score = [&](auto fn) {
for (auto idx : trees) {
CHECK_LE(idx, total_n_trees) << "Invalid tree index.";
auto const& p_tree = model_.trees[idx];
p_tree->WalkTree([&](bst_node_t nidx) {
auto const& node = (*p_tree)[nidx];
if (!node.IsLeaf()) {
split_counts[node.SplitIndex()]++;
fn(p_tree, nidx, node.SplitIndex());
}
return true;
});
}
};
if (importance_type == "weight") {
add_score([&](auto const&, bst_node_t, bst_feature_t split) {
gain_map[split] = split_counts[split];
});
} else if (importance_type == "gain" || importance_type == "total_gain") {
add_score([&](auto const &p_tree, bst_node_t nidx, bst_feature_t split) {
gain_map[split] += p_tree->Stat(nidx).loss_chg;
});
} else if (importance_type == "cover" || importance_type == "total_cover") {
add_score([&](auto const &p_tree, bst_node_t nidx, bst_feature_t split) {
gain_map[split] += p_tree->Stat(nidx).sum_hess;
});
} else {
LOG(FATAL)
<< "Unknown feature importance type, expected one of: "
<< R"({"weight", "total_gain", "total_cover", "gain", "cover"}, got: )"
<< importance_type;
}
if (importance_type == "gain" || importance_type == "cover") {
for (size_t i = 0; i < gain_map.size(); ++i) {
gain_map[i] /= std::max(1.0f, static_cast<float>(split_counts[i]));
}
}
features->clear();
scores->clear();
for (size_t i = 0; i < split_counts.size(); ++i) {
if (split_counts[i] != 0) {
features->push_back(i);
scores->push_back(gain_map[i]);
}
}
}
void PredictInstance(const SparsePage::Inst& inst, std::vector<bst_float>* out_preds,
uint32_t layer_begin, uint32_t layer_end) override {
CHECK(configured_);
std::uint32_t _, tree_end;
std::tie(_, tree_end) = detail::LayerToTree(model_, layer_begin, layer_end);
cpu_predictor_->PredictInstance(inst, out_preds, model_, tree_end);
}
void PredictLeaf(DMatrix* p_fmat,
HostDeviceVector<bst_float>* out_preds,
uint32_t layer_begin, uint32_t layer_end) override {
auto [tree_begin, tree_end] = detail::LayerToTree(model_, layer_begin, layer_end);
CHECK_EQ(tree_begin, 0) << "Predict leaf supports only iteration end: (0, "
"n_iteration), use model slicing instead.";
this->GetPredictor()->PredictLeaf(p_fmat, out_preds, model_, tree_end);
}
void PredictContribution(DMatrix* p_fmat,
HostDeviceVector<bst_float>* out_contribs,
uint32_t layer_begin, uint32_t layer_end, bool approximate,
int, unsigned) override {
CHECK(configured_);
auto [tree_begin, tree_end] = detail::LayerToTree(model_, layer_begin, layer_end);
CHECK_EQ(tree_begin, 0)
<< "Predict contribution supports only iteration end: (0, "
"n_iteration), using model slicing instead.";
this->GetPredictor()->PredictContribution(
p_fmat, out_contribs, model_, tree_end, nullptr, approximate);
}
void PredictInteractionContributions(
DMatrix *p_fmat, HostDeviceVector<bst_float> *out_contribs,
uint32_t layer_begin, uint32_t layer_end, bool approximate) override {
CHECK(configured_);
auto [tree_begin, tree_end] = detail::LayerToTree(model_, layer_begin, layer_end);
CHECK_EQ(tree_begin, 0)
<< "Predict interaction contribution supports only iteration end: (0, "
"n_iteration), using model slicing instead.";
this->GetPredictor()->PredictInteractionContributions(
p_fmat, out_contribs, model_, tree_end, nullptr, approximate);
}
[[nodiscard]] std::vector<std::string> DumpModel(const FeatureMap& fmap, bool with_stats,
std::string format) const override {
return model_.DumpModel(fmap, with_stats, this->ctx_->Threads(), format);
}
protected:
// initialize updater before using them
void InitUpdater(Args const& cfg);
void BoostNewTrees(HostDeviceVector<GradientPair>* gpair, DMatrix* p_fmat, int bst_group,
std::vector<HostDeviceVector<bst_node_t>>* out_position,
std::vector<std::unique_ptr<RegTree>>* ret);
std::unique_ptr<Predictor> const& GetPredictor(HostDeviceVector<float> const* out_pred = nullptr,
DMatrix* f_dmat = nullptr) const;
// commit new trees all at once
virtual void CommitModel(TreesOneIter&& new_trees);
// --- data structure ---
GBTreeModel model_;
// training parameter
GBTreeTrainParam tparam_;
// Tree training parameter
tree::TrainParam tree_param_;
// ----training fields----
bool showed_updater_warning_ {false};
bool specified_updater_ {false};
bool configured_ {false};
// configurations for tree
Args cfg_;
// the updaters that can be applied to each of tree
std::vector<std::unique_ptr<TreeUpdater>> updaters_;
// Predictors
std::unique_ptr<Predictor> cpu_predictor_;
#if defined(XGBOOST_USE_CUDA) || defined(XGBOOST_USE_HIP)
std::unique_ptr<Predictor> gpu_predictor_;
#endif // defined(XGBOOST_USE_CUDA) || defined(XGBOOST_USE_HIP)
#if defined(XGBOOST_USE_ONEAPI)
std::unique_ptr<Predictor> oneapi_predictor_;
#endif // defined(XGBOOST_USE_ONEAPI)
common::Monitor monitor_;
};
} // namespace gbm
} // namespace xgboost
#endif // XGBOOST_GBM_GBTREE_H_