75bf97b575
59e63bc minor 6233050 ok 14477f9 add namenode 75a6d34 add libhdfs opts e3c76bf minmum fix 8b3c435 chg 2035799 test code 7751b2b add debug 7690313 ok bd346b4 ok faba1dc add testload 6f7783e add testload e5f0340 ok 3ed9ec8 chg e552ac4 ask for more ram in am b2505e3 only stop nm when sucess bc696c9 add queue info f3e867e add option queue 5dc843c refactor fileio cd9c81b quick fix 1e23af2 add virtual destructor to iseekstream f165ffb fix hdfs 8cc6508 allow demo to pass in env fad4d69 ok 0fd6197 fix more 7423837 fix more d25de54 add temporal solution, run_yarn_prog.py e5a9e31 final attempt ed3bee8 add command back 0774000 add hdfs to resource 9b66e7e fix hadoop 6812f14 ok 08e1c16 change hadoop prefix back to hadoop home d6b6828 Update build.sh 146e069 bugfix: logical boundary for ring buffer 19cb685 ok 4cf3c13 Merge branch 'master' of ssh://github.com/tqchen/rabit 20daddb add tracker c57dad8 add ringbased passing and batch schedule 295d8a1 update 994cb02 add sge 014c866 OK git-subtree-dir: subtree/rabit git-subtree-split: 59e63bc1354c9ff516d72d9a6468f6c431627202
70 lines
3.0 KiB
Python
Executable File
70 lines
3.0 KiB
Python
Executable File
#!/usr/bin/env python
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"""
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Submit rabit jobs to Sun Grid Engine
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"""
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import argparse
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import sys
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import os
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import subprocess
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import rabit_tracker as tracker
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parser = argparse.ArgumentParser(description='Rabit script to submit rabit job using MPI')
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parser.add_argument('-n', '--nworker', required=True, type=int,
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help = 'number of worker proccess to be launched')
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parser.add_argument('-q', '--queue', default='default', type=str,
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help = 'the queue we want to submit the job to')
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parser.add_argument('-hip', '--host_ip', default='auto', type=str,
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help = 'host IP address if cannot be automatically guessed, specify the IP of submission machine')
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parser.add_argument('--vcores', default = 1, type=int,
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help = 'number of vcpores to request in each mapper, set it if each rabit job is multi-threaded')
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parser.add_argument('--jobname', default='auto', help = 'customize jobname in tracker')
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parser.add_argument('--logdir', default='auto', help = 'customize the directory to place the logs')
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parser.add_argument('-v', '--verbose', default=0, choices=[0, 1], type=int,
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help = 'print more messages into the console')
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parser.add_argument('command', nargs='+',
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help = 'command for rabit program')
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args = parser.parse_args()
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if args.jobname == 'auto':
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args.jobname = ('rabit%d.' % args.nworker) + args.command[0].split('/')[-1];
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if args.logdir == 'auto':
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args.logdir = args.jobname + '.log'
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if os.path.exists(args.logdir):
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if not os.path.isdir(args.logdir):
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raise RuntimeError('specified logdir %s is a file instead of directory' % args.logdir)
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else:
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os.mkdir(args.logdir)
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runscript = '%s/runrabit.sh' % args.logdir
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fo = open(runscript, 'w')
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fo.write('\"$@\"\n')
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fo.close()
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#
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# submission script using MPI
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#
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def sge_submit(nslave, worker_args, worker_envs):
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"""
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customized submit script, that submit nslave jobs, each must contain args as parameter
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note this can be a lambda function containing additional parameters in input
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Parameters
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nslave number of slave process to start up
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args arguments to launch each job
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this usually includes the parameters of master_uri and parameters passed into submit
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"""
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env_arg = ','.join(['%s=\"%s\"' % (k, str(v)) for k, v in worker_envs.items()])
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cmd = 'qsub -cwd -t 1-%d -S /bin/bash' % nslave
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if args.queue != 'default':
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cmd += '-q %s' % args.queue
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cmd += ' -N %s ' % args.jobname
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cmd += ' -e %s -o %s' % (args.logdir, args.logdir)
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cmd += ' -pe orte %d' % (args.vcores)
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cmd += ' -v %s,PATH=${PATH}:.' % env_arg
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cmd += ' %s %s' % (runscript, ' '.join(args.command + worker_args))
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print cmd
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subprocess.check_call(cmd, shell = True)
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print 'Waiting for the jobs to get up...'
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# call submit, with nslave, the commands to run each job and submit function
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tracker.submit(args.nworker, [], fun_submit = sge_submit, verbose = args.verbose)
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