* oprimizations for pre-processing * code cleaning * code cleaning * code cleaning after review * Apply suggestions from code review Co-Authored-By: SmirnovEgorRu <egor.smirnov@intel.com>
922 lines
33 KiB
C++
922 lines
33 KiB
C++
/*!
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* Copyright 2017-2018 by Contributors
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* \file updater_quantile_hist.cc
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* \brief use quantized feature values to construct a tree
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* \author Philip Cho, Tianqi Checn
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*/
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#include <dmlc/timer.h>
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#include <rabit/rabit.h>
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#include <xgboost/logging.h>
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#include <xgboost/tree_updater.h>
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#include <cmath>
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#include <memory>
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#include <vector>
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#include <algorithm>
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#include <queue>
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#include <iomanip>
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#include <numeric>
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#include <string>
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#include <utility>
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#include "./param.h"
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#include "./updater_quantile_hist.h"
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#include "./split_evaluator.h"
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#include "../common/random.h"
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#include "../common/hist_util.h"
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#include "../common/row_set.h"
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#include "../common/column_matrix.h"
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namespace xgboost {
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namespace tree {
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DMLC_REGISTRY_FILE_TAG(updater_quantile_hist);
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void QuantileHistMaker::Init(const std::vector<std::pair<std::string, std::string> >& args) {
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// initialize pruner
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if (!pruner_) {
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pruner_.reset(TreeUpdater::Create("prune"));
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}
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pruner_->Init(args);
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param_.InitAllowUnknown(args);
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is_gmat_initialized_ = false;
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// initialise the split evaluator
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if (!spliteval_) {
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spliteval_.reset(SplitEvaluator::Create(param_.split_evaluator));
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}
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spliteval_->Init(args);
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}
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void QuantileHistMaker::Update(HostDeviceVector<GradientPair> *gpair,
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DMatrix *dmat,
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const std::vector<RegTree *> &trees) {
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if (is_gmat_initialized_ == false) {
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double tstart = dmlc::GetTime();
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gmat_.Init(dmat, static_cast<uint32_t>(param_.max_bin));
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column_matrix_.Init(gmat_, param_.sparse_threshold);
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if (param_.enable_feature_grouping > 0) {
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gmatb_.Init(gmat_, column_matrix_, param_);
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}
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is_gmat_initialized_ = true;
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LOG(INFO) << "Generating gmat: " << dmlc::GetTime() - tstart << " sec";
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}
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// rescale learning rate according to size of trees
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float lr = param_.learning_rate;
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param_.learning_rate = lr / trees.size();
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// build tree
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if (!builder_) {
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builder_.reset(new Builder(
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param_,
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std::move(pruner_),
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std::unique_ptr<SplitEvaluator>(spliteval_->GetHostClone())));
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}
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for (auto tree : trees) {
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builder_->Update(gmat_, gmatb_, column_matrix_, gpair, dmat, tree);
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}
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param_.learning_rate = lr;
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}
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bool QuantileHistMaker::UpdatePredictionCache(
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const DMatrix* data,
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HostDeviceVector<bst_float>* out_preds) {
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if (!builder_ || param_.subsample < 1.0f) {
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return false;
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} else {
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return builder_->UpdatePredictionCache(data, out_preds);
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}
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}
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void QuantileHistMaker::Builder::SyncHistograms(
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int starting_index,
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int sync_count,
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RegTree *p_tree) {
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builder_monitor_.Start("SyncHistograms");
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this->histred_.Allreduce(hist_[starting_index].data(), hist_builder_.GetNumBins() * sync_count);
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// use Subtraction Trick
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for (auto const& node_pair : nodes_for_subtraction_trick_) {
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hist_.AddHistRow(node_pair.first);
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SubtractionTrick(hist_[node_pair.first], hist_[node_pair.second],
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hist_[(*p_tree)[node_pair.first].Parent()]);
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}
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builder_monitor_.Stop("SyncHistograms");
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}
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void QuantileHistMaker::Builder::BuildLocalHistograms(
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int *starting_index,
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int *sync_count,
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const GHistIndexMatrix &gmat,
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const GHistIndexBlockMatrix &gmatb,
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RegTree *p_tree,
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const std::vector<GradientPair> &gpair_h) {
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builder_monitor_.Start("BuildLocalHistograms");
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for (auto const& entry : qexpand_depth_wise_) {
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int nid = entry.nid;
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RegTree::Node &node = (*p_tree)[nid];
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if (rabit::IsDistributed()) {
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if (node.IsRoot() || node.IsLeftChild()) {
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hist_.AddHistRow(nid);
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// in distributed setting, we always calculate from left child or root node
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BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
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if (!node.IsRoot()) {
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nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].RightChild()] = nid;
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}
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(*sync_count)++;
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(*starting_index) = std::min((*starting_index), nid);
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}
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} else {
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if (!node.IsRoot() && node.IsLeftChild() &&
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(row_set_collection_[nid].Size() <
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row_set_collection_[(*p_tree)[node.Parent()].RightChild()].Size())) {
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hist_.AddHistRow(nid);
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BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
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nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].RightChild()] = nid;
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(*sync_count)++;
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(*starting_index) = std::min((*starting_index), nid);
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} else if (!node.IsRoot() && !node.IsLeftChild() &&
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(row_set_collection_[nid].Size() <=
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row_set_collection_[(*p_tree)[node.Parent()].LeftChild()].Size())) {
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hist_.AddHistRow(nid);
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BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
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nodes_for_subtraction_trick_[(*p_tree)[node.Parent()].LeftChild()] = nid;
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(*sync_count)++;
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(*starting_index) = std::min((*starting_index), nid);
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} else if (node.IsRoot()) {
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hist_.AddHistRow(nid);
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BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], false);
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(*sync_count)++;
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(*starting_index) = std::min((*starting_index), nid);
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}
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}
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}
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builder_monitor_.Stop("BuildLocalHistograms");
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}
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void QuantileHistMaker::Builder::BuildNodeStats(
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const GHistIndexMatrix &gmat,
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DMatrix *p_fmat,
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RegTree *p_tree,
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const std::vector<GradientPair> &gpair_h) {
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builder_monitor_.Start("BuildNodeStats");
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for (auto const& entry : qexpand_depth_wise_) {
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int nid = entry.nid;
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this->InitNewNode(nid, gmat, gpair_h, *p_fmat, *p_tree);
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// add constraints
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if (!(*p_tree)[nid].IsLeftChild() && !(*p_tree)[nid].IsRoot()) {
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// it's a right child
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auto parent_id = (*p_tree)[nid].Parent();
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auto left_sibling_id = (*p_tree)[parent_id].LeftChild();
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auto parent_split_feature_id = snode_[parent_id].best.SplitIndex();
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spliteval_->AddSplit(parent_id, left_sibling_id, nid, parent_split_feature_id,
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snode_[left_sibling_id].weight, snode_[nid].weight);
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}
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}
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builder_monitor_.Stop("BuildNodeStats");
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}
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void QuantileHistMaker::Builder::EvaluateSplits(
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const GHistIndexMatrix &gmat,
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const ColumnMatrix &column_matrix,
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DMatrix *p_fmat,
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RegTree *p_tree,
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int *num_leaves,
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int depth,
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unsigned *timestamp,
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std::vector<ExpandEntry> *temp_qexpand_depth) {
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for (auto const& entry : qexpand_depth_wise_) {
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int nid = entry.nid;
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this->EvaluateSplit(nid, gmat, hist_, *p_fmat, *p_tree);
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if (snode_[nid].best.loss_chg < kRtEps ||
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(param_.max_depth > 0 && depth == param_.max_depth) ||
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(param_.max_leaves > 0 && (*num_leaves) == param_.max_leaves)) {
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(*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate);
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} else {
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this->ApplySplit(nid, gmat, column_matrix, hist_, *p_fmat, p_tree);
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int left_id = (*p_tree)[nid].LeftChild();
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int right_id = (*p_tree)[nid].RightChild();
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temp_qexpand_depth->push_back(ExpandEntry(left_id,
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p_tree->GetDepth(left_id), 0.0, (*timestamp)++));
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temp_qexpand_depth->push_back(ExpandEntry(right_id,
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p_tree->GetDepth(right_id), 0.0, (*timestamp)++));
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// - 1 parent + 2 new children
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(*num_leaves)++;
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}
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}
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}
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void QuantileHistMaker::Builder::ExpandWithDepthWidth(
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const GHistIndexMatrix &gmat,
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const GHistIndexBlockMatrix &gmatb,
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const ColumnMatrix &column_matrix,
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DMatrix *p_fmat,
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RegTree *p_tree,
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const std::vector<GradientPair> &gpair_h) {
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unsigned timestamp = 0;
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int num_leaves = 0;
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// in depth_wise growing, we feed loss_chg with 0.0 since it is not used anyway
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qexpand_depth_wise_.emplace_back(ExpandEntry(0, p_tree->GetDepth(0), 0.0, timestamp++));
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++num_leaves;
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for (int depth = 0; depth < param_.max_depth + 1; depth++) {
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int starting_index = std::numeric_limits<int>::max();
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int sync_count = 0;
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std::vector<ExpandEntry> temp_qexpand_depth;
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BuildLocalHistograms(&starting_index, &sync_count, gmat, gmatb, p_tree, gpair_h);
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SyncHistograms(starting_index, sync_count, p_tree);
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BuildNodeStats(gmat, p_fmat, p_tree, gpair_h);
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EvaluateSplits(gmat, column_matrix, p_fmat, p_tree, &num_leaves, depth, ×tamp,
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&temp_qexpand_depth);
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// clean up
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qexpand_depth_wise_.clear();
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nodes_for_subtraction_trick_.clear();
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if (temp_qexpand_depth.empty()) {
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break;
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} else {
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qexpand_depth_wise_ = temp_qexpand_depth;
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temp_qexpand_depth.clear();
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}
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}
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}
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void QuantileHistMaker::Builder::ExpandWithLossGuide(
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const GHistIndexMatrix& gmat,
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const GHistIndexBlockMatrix& gmatb,
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const ColumnMatrix& column_matrix,
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DMatrix* p_fmat,
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RegTree* p_tree,
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const std::vector<GradientPair>& gpair_h) {
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unsigned timestamp = 0;
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int num_leaves = 0;
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for (int nid = 0; nid < p_tree->param.num_roots; ++nid) {
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hist_.AddHistRow(nid);
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BuildHist(gpair_h, row_set_collection_[nid], gmat, gmatb, hist_[nid], true);
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this->InitNewNode(nid, gmat, gpair_h, *p_fmat, *p_tree);
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this->EvaluateSplit(nid, gmat, hist_, *p_fmat, *p_tree);
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qexpand_loss_guided_->push(ExpandEntry(nid, p_tree->GetDepth(nid),
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snode_[nid].best.loss_chg,
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timestamp++));
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++num_leaves;
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}
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while (!qexpand_loss_guided_->empty()) {
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const ExpandEntry candidate = qexpand_loss_guided_->top();
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const int nid = candidate.nid;
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qexpand_loss_guided_->pop();
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if (candidate.loss_chg <= kRtEps
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|| (param_.max_depth > 0 && candidate.depth == param_.max_depth)
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|| (param_.max_leaves > 0 && num_leaves == param_.max_leaves) ) {
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(*p_tree)[nid].SetLeaf(snode_[nid].weight * param_.learning_rate);
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} else {
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this->ApplySplit(nid, gmat, column_matrix, hist_, *p_fmat, p_tree);
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const int cleft = (*p_tree)[nid].LeftChild();
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const int cright = (*p_tree)[nid].RightChild();
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hist_.AddHistRow(cleft);
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hist_.AddHistRow(cright);
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if (rabit::IsDistributed()) {
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// in distributed mode, we need to keep consistent across workers
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BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft], true);
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SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]);
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} else {
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if (row_set_collection_[cleft].Size() < row_set_collection_[cright].Size()) {
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BuildHist(gpair_h, row_set_collection_[cleft], gmat, gmatb, hist_[cleft], true);
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SubtractionTrick(hist_[cright], hist_[cleft], hist_[nid]);
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} else {
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BuildHist(gpair_h, row_set_collection_[cright], gmat, gmatb, hist_[cright], true);
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SubtractionTrick(hist_[cleft], hist_[cright], hist_[nid]);
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}
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}
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this->InitNewNode(cleft, gmat, gpair_h, *p_fmat, *p_tree);
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this->InitNewNode(cright, gmat, gpair_h, *p_fmat, *p_tree);
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bst_uint featureid = snode_[nid].best.SplitIndex();
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spliteval_->AddSplit(nid, cleft, cright, featureid,
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snode_[cleft].weight, snode_[cright].weight);
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this->EvaluateSplit(cleft, gmat, hist_, *p_fmat, *p_tree);
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this->EvaluateSplit(cright, gmat, hist_, *p_fmat, *p_tree);
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qexpand_loss_guided_->push(ExpandEntry(cleft, p_tree->GetDepth(cleft),
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snode_[cleft].best.loss_chg,
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timestamp++));
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qexpand_loss_guided_->push(ExpandEntry(cright, p_tree->GetDepth(cright),
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snode_[cright].best.loss_chg,
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timestamp++));
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++num_leaves; // give two and take one, as parent is no longer a leaf
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}
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}
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}
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void QuantileHistMaker::Builder::Update(const GHistIndexMatrix& gmat,
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const GHistIndexBlockMatrix& gmatb,
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const ColumnMatrix& column_matrix,
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HostDeviceVector<GradientPair>* gpair,
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DMatrix* p_fmat,
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RegTree* p_tree) {
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builder_monitor_.Start("Update");
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const std::vector<GradientPair>& gpair_h = gpair->ConstHostVector();
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spliteval_->Reset();
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this->InitData(gmat, gpair_h, *p_fmat, *p_tree);
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if (param_.grow_policy == TrainParam::kLossGuide) {
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ExpandWithLossGuide(gmat, gmatb, column_matrix, p_fmat, p_tree, gpair_h);
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} else {
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ExpandWithDepthWidth(gmat, gmatb, column_matrix, p_fmat, p_tree, gpair_h);
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}
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for (int nid = 0; nid < p_tree->param.num_nodes; ++nid) {
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p_tree->Stat(nid).loss_chg = snode_[nid].best.loss_chg;
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p_tree->Stat(nid).base_weight = snode_[nid].weight;
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p_tree->Stat(nid).sum_hess = static_cast<float>(snode_[nid].stats.sum_hess);
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}
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pruner_->Update(gpair, p_fmat, std::vector<RegTree*>{p_tree});
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builder_monitor_.Stop("Update");
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}
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bool QuantileHistMaker::Builder::UpdatePredictionCache(
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const DMatrix* data,
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HostDeviceVector<bst_float>* p_out_preds) {
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std::vector<bst_float>& out_preds = p_out_preds->HostVector();
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// p_last_fmat_ is a valid pointer as long as UpdatePredictionCache() is called in
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// conjunction with Update().
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if (!p_last_fmat_ || !p_last_tree_ || data != p_last_fmat_) {
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return false;
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}
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if (leaf_value_cache_.empty()) {
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leaf_value_cache_.resize(p_last_tree_->param.num_nodes,
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std::numeric_limits<float>::infinity());
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}
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CHECK_GT(out_preds.size(), 0U);
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for (const RowSetCollection::Elem rowset : row_set_collection_) {
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if (rowset.begin != nullptr && rowset.end != nullptr) {
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int nid = rowset.node_id;
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bst_float leaf_value;
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// if a node is marked as deleted by the pruner, traverse upward to locate
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// a non-deleted leaf.
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if ((*p_last_tree_)[nid].IsDeleted()) {
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while ((*p_last_tree_)[nid].IsDeleted()) {
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nid = (*p_last_tree_)[nid].Parent();
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}
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CHECK((*p_last_tree_)[nid].IsLeaf());
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}
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leaf_value = (*p_last_tree_)[nid].LeafValue();
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for (const size_t* it = rowset.begin; it < rowset.end; ++it) {
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out_preds[*it] += leaf_value;
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}
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}
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}
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return true;
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}
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void QuantileHistMaker::Builder::InitData(const GHistIndexMatrix& gmat,
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const std::vector<GradientPair>& gpair,
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const DMatrix& fmat,
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const RegTree& tree) {
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CHECK_EQ(tree.param.num_nodes, tree.param.num_roots)
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<< "ColMakerHist: can only grow new tree";
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CHECK((param_.max_depth > 0 || param_.max_leaves > 0))
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<< "max_depth or max_leaves cannot be both 0 (unlimited); "
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<< "at least one should be a positive quantity.";
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if (param_.grow_policy == TrainParam::kDepthWise) {
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CHECK(param_.max_depth > 0) << "max_depth cannot be 0 (unlimited) "
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<< "when grow_policy is depthwise.";
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}
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builder_monitor_.Start("InitData");
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const auto& info = fmat.Info();
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{
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// initialize the row set
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row_set_collection_.Clear();
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// clear local prediction cache
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leaf_value_cache_.clear();
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// initialize histogram collection
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uint32_t nbins = gmat.cut.row_ptr.back();
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hist_.Init(nbins);
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// initialize histogram builder
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#pragma omp parallel
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{
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this->nthread_ = omp_get_num_threads();
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}
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hist_builder_.Init(this->nthread_, nbins);
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CHECK_EQ(info.root_index_.size(), 0U);
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std::vector<size_t>& row_indices = row_set_collection_.row_indices_;
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row_indices.resize(info.num_row_);
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auto* p_row_indices = row_indices.data();
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// mark subsample and build list of member rows
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if (param_.subsample < 1.0f) {
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std::bernoulli_distribution coin_flip(param_.subsample);
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auto& rnd = common::GlobalRandom();
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size_t j = 0;
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for (size_t i = 0; i < info.num_row_; ++i) {
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if (gpair[i].GetHess() >= 0.0f && coin_flip(rnd)) {
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p_row_indices[j++] = i;
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}
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}
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row_indices.resize(j);
|
|
} else {
|
|
MemStackAllocator<bool, 128> buff(this->nthread_);
|
|
bool* p_buff = buff.Get();
|
|
std::fill(p_buff, p_buff + this->nthread_, false);
|
|
|
|
const size_t block_size = info.num_row_ / this->nthread_ + !!(info.num_row_ % this->nthread_);
|
|
|
|
#pragma omp parallel num_threads(this->nthread_)
|
|
{
|
|
const size_t tid = omp_get_thread_num();
|
|
const size_t ibegin = tid * block_size;
|
|
const size_t iend = std::min(static_cast<size_t>(ibegin + block_size),
|
|
static_cast<size_t>(info.num_row_));
|
|
|
|
for (size_t i = ibegin; i < iend; ++i) {
|
|
if (gpair[i].GetHess() < 0.0f) {
|
|
p_buff[tid] = true;
|
|
break;
|
|
}
|
|
}
|
|
}
|
|
|
|
bool has_neg_hess = false;
|
|
for (size_t tid = 0; tid < this->nthread_; ++tid) {
|
|
if (p_buff[tid]) {
|
|
has_neg_hess = true;
|
|
}
|
|
}
|
|
|
|
if (has_neg_hess) {
|
|
size_t j = 0;
|
|
for (size_t i = 0; i < info.num_row_; ++i) {
|
|
if (gpair[i].GetHess() >= 0.0f) {
|
|
p_row_indices[j++] = i;
|
|
}
|
|
}
|
|
row_indices.resize(j);
|
|
} else {
|
|
#pragma omp parallel num_threads(this->nthread_)
|
|
{
|
|
const size_t tid = omp_get_thread_num();
|
|
const size_t ibegin = tid * block_size;
|
|
const size_t iend = std::min(static_cast<size_t>(ibegin + block_size),
|
|
static_cast<size_t>(info.num_row_));
|
|
for (size_t i = ibegin; i < iend; ++i) {
|
|
p_row_indices[i] = i;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
row_set_collection_.Init();
|
|
|
|
{
|
|
/* determine layout of data */
|
|
const size_t nrow = info.num_row_;
|
|
const size_t ncol = info.num_col_;
|
|
const size_t nnz = info.num_nonzero_;
|
|
// number of discrete bins for feature 0
|
|
const uint32_t nbins_f0 = gmat.cut.row_ptr[1] - gmat.cut.row_ptr[0];
|
|
if (nrow * ncol == nnz) {
|
|
// dense data with zero-based indexing
|
|
data_layout_ = kDenseDataZeroBased;
|
|
} else if (nbins_f0 == 0 && nrow * (ncol - 1) == nnz) {
|
|
// dense data with one-based indexing
|
|
data_layout_ = kDenseDataOneBased;
|
|
} else {
|
|
// sparse data
|
|
data_layout_ = kSparseData;
|
|
}
|
|
}
|
|
{
|
|
// store a pointer to the tree
|
|
p_last_tree_ = &tree;
|
|
// store a pointer to training data
|
|
p_last_fmat_ = &fmat;
|
|
}
|
|
if (data_layout_ == kDenseDataOneBased) {
|
|
column_sampler_.Init(info.num_col_, param_.colsample_bynode, param_.colsample_bylevel,
|
|
param_.colsample_bytree, true);
|
|
} else {
|
|
column_sampler_.Init(info.num_col_, param_.colsample_bynode, param_.colsample_bylevel,
|
|
param_.colsample_bytree, false);
|
|
}
|
|
if (data_layout_ == kDenseDataZeroBased || data_layout_ == kDenseDataOneBased) {
|
|
/* specialized code for dense data:
|
|
choose the column that has a least positive number of discrete bins.
|
|
For dense data (with no missing value),
|
|
the sum of gradient histogram is equal to snode[nid] */
|
|
const std::vector<uint32_t>& row_ptr = gmat.cut.row_ptr;
|
|
const auto nfeature = static_cast<bst_uint>(row_ptr.size() - 1);
|
|
uint32_t min_nbins_per_feature = 0;
|
|
for (bst_uint i = 0; i < nfeature; ++i) {
|
|
const uint32_t nbins = row_ptr[i + 1] - row_ptr[i];
|
|
if (nbins > 0) {
|
|
if (min_nbins_per_feature == 0 || min_nbins_per_feature > nbins) {
|
|
min_nbins_per_feature = nbins;
|
|
fid_least_bins_ = i;
|
|
}
|
|
}
|
|
}
|
|
CHECK_GT(min_nbins_per_feature, 0U);
|
|
}
|
|
{
|
|
snode_.reserve(256);
|
|
snode_.clear();
|
|
}
|
|
{
|
|
if (param_.grow_policy == TrainParam::kLossGuide) {
|
|
qexpand_loss_guided_.reset(new ExpandQueue(LossGuide));
|
|
} else {
|
|
qexpand_depth_wise_.clear();
|
|
}
|
|
}
|
|
builder_monitor_.Stop("InitData");
|
|
}
|
|
|
|
void QuantileHistMaker::Builder::EvaluateSplit(const int nid,
|
|
const GHistIndexMatrix& gmat,
|
|
const HistCollection& hist,
|
|
const DMatrix& fmat,
|
|
const RegTree& tree) {
|
|
builder_monitor_.Start("EvaluateSplit");
|
|
// start enumeration
|
|
const MetaInfo& info = fmat.Info();
|
|
auto p_feature_set = column_sampler_.GetFeatureSet(tree.GetDepth(nid));
|
|
const auto& feature_set = p_feature_set->HostVector();
|
|
const auto nfeature = static_cast<bst_uint>(feature_set.size());
|
|
const auto nthread = static_cast<bst_omp_uint>(this->nthread_);
|
|
best_split_tloc_.resize(nthread);
|
|
#pragma omp parallel for schedule(static) num_threads(nthread)
|
|
for (bst_omp_uint tid = 0; tid < nthread; ++tid) {
|
|
best_split_tloc_[tid] = snode_[nid].best;
|
|
}
|
|
GHistRow node_hist = hist[nid];
|
|
#pragma omp parallel for schedule(dynamic) num_threads(nthread)
|
|
for (bst_omp_uint i = 0; i < nfeature; ++i) {
|
|
const bst_uint fid = feature_set[i];
|
|
const unsigned tid = omp_get_thread_num();
|
|
this->EnumerateSplit(-1, gmat, node_hist, snode_[nid], info,
|
|
&best_split_tloc_[tid], fid, nid);
|
|
this->EnumerateSplit(+1, gmat, node_hist, snode_[nid], info,
|
|
&best_split_tloc_[tid], fid, nid);
|
|
}
|
|
for (unsigned tid = 0; tid < nthread; ++tid) {
|
|
snode_[nid].best.Update(best_split_tloc_[tid]);
|
|
}
|
|
builder_monitor_.Stop("EvaluateSplit");
|
|
}
|
|
|
|
void QuantileHistMaker::Builder::ApplySplit(int nid,
|
|
const GHistIndexMatrix& gmat,
|
|
const ColumnMatrix& column_matrix,
|
|
const HistCollection& hist,
|
|
const DMatrix& fmat,
|
|
RegTree* p_tree) {
|
|
builder_monitor_.Start("ApplySplit");
|
|
// TODO(hcho3): support feature sampling by levels
|
|
|
|
/* 1. Create child nodes */
|
|
NodeEntry& e = snode_[nid];
|
|
bst_float left_leaf_weight =
|
|
spliteval_->ComputeWeight(nid, e.best.left_sum) * param_.learning_rate;
|
|
bst_float right_leaf_weight =
|
|
spliteval_->ComputeWeight(nid, e.best.right_sum) * param_.learning_rate;
|
|
p_tree->ExpandNode(nid, e.best.SplitIndex(), e.best.split_value,
|
|
e.best.DefaultLeft(), e.weight, left_leaf_weight,
|
|
right_leaf_weight, e.best.loss_chg, e.stats.sum_hess);
|
|
|
|
/* 2. Categorize member rows */
|
|
const auto nthread = static_cast<bst_omp_uint>(this->nthread_);
|
|
row_split_tloc_.resize(nthread);
|
|
for (bst_omp_uint i = 0; i < nthread; ++i) {
|
|
row_split_tloc_[i].left.clear();
|
|
row_split_tloc_[i].right.clear();
|
|
}
|
|
const bool default_left = (*p_tree)[nid].DefaultLeft();
|
|
const bst_uint fid = (*p_tree)[nid].SplitIndex();
|
|
const bst_float split_pt = (*p_tree)[nid].SplitCond();
|
|
const uint32_t lower_bound = gmat.cut.row_ptr[fid];
|
|
const uint32_t upper_bound = gmat.cut.row_ptr[fid + 1];
|
|
int32_t split_cond = -1;
|
|
// convert floating-point split_pt into corresponding bin_id
|
|
// split_cond = -1 indicates that split_pt is less than all known cut points
|
|
CHECK_LT(upper_bound,
|
|
static_cast<uint32_t>(std::numeric_limits<int32_t>::max()));
|
|
for (uint32_t i = lower_bound; i < upper_bound; ++i) {
|
|
if (split_pt == gmat.cut.cut[i]) {
|
|
split_cond = static_cast<int32_t>(i);
|
|
}
|
|
}
|
|
|
|
const auto& rowset = row_set_collection_[nid];
|
|
|
|
Column column = column_matrix.GetColumn(fid);
|
|
if (column.GetType() == xgboost::common::kDenseColumn) {
|
|
ApplySplitDenseData(rowset, gmat, &row_split_tloc_, column, split_cond,
|
|
default_left);
|
|
} else {
|
|
ApplySplitSparseData(rowset, gmat, &row_split_tloc_, column, lower_bound,
|
|
upper_bound, split_cond, default_left);
|
|
}
|
|
|
|
row_set_collection_.AddSplit(
|
|
nid, row_split_tloc_, (*p_tree)[nid].LeftChild(), (*p_tree)[nid].RightChild());
|
|
builder_monitor_.Stop("ApplySplit");
|
|
}
|
|
|
|
void QuantileHistMaker::Builder::ApplySplitDenseData(
|
|
const RowSetCollection::Elem rowset,
|
|
const GHistIndexMatrix& gmat,
|
|
std::vector<RowSetCollection::Split>* p_row_split_tloc,
|
|
const Column& column,
|
|
bst_int split_cond,
|
|
bool default_left) {
|
|
std::vector<RowSetCollection::Split>& row_split_tloc = *p_row_split_tloc;
|
|
constexpr int kUnroll = 8; // loop unrolling factor
|
|
const size_t nrows = rowset.end - rowset.begin;
|
|
const size_t rest = nrows % kUnroll;
|
|
|
|
#pragma omp parallel for num_threads(nthread_) schedule(static)
|
|
for (bst_omp_uint i = 0; i < nrows - rest; i += kUnroll) {
|
|
const bst_uint tid = omp_get_thread_num();
|
|
auto& left = row_split_tloc[tid].left;
|
|
auto& right = row_split_tloc[tid].right;
|
|
size_t rid[kUnroll];
|
|
uint32_t rbin[kUnroll];
|
|
for (int k = 0; k < kUnroll; ++k) {
|
|
rid[k] = rowset.begin[i + k];
|
|
}
|
|
for (int k = 0; k < kUnroll; ++k) {
|
|
rbin[k] = column.GetFeatureBinIdx(rid[k]);
|
|
}
|
|
for (int k = 0; k < kUnroll; ++k) { // NOLINT
|
|
if (rbin[k] == std::numeric_limits<uint32_t>::max()) { // missing value
|
|
if (default_left) {
|
|
left.push_back(rid[k]);
|
|
} else {
|
|
right.push_back(rid[k]);
|
|
}
|
|
} else {
|
|
if (static_cast<int32_t>(rbin[k] + column.GetBaseIdx()) <= split_cond) {
|
|
left.push_back(rid[k]);
|
|
} else {
|
|
right.push_back(rid[k]);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
for (size_t i = nrows - rest; i < nrows; ++i) {
|
|
auto& left = row_split_tloc[nthread_-1].left;
|
|
auto& right = row_split_tloc[nthread_-1].right;
|
|
const size_t rid = rowset.begin[i];
|
|
const uint32_t rbin = column.GetFeatureBinIdx(rid);
|
|
if (rbin == std::numeric_limits<uint32_t>::max()) { // missing value
|
|
if (default_left) {
|
|
left.push_back(rid);
|
|
} else {
|
|
right.push_back(rid);
|
|
}
|
|
} else {
|
|
if (static_cast<int32_t>(rbin + column.GetBaseIdx()) <= split_cond) {
|
|
left.push_back(rid);
|
|
} else {
|
|
right.push_back(rid);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
void QuantileHistMaker::Builder::ApplySplitSparseData(
|
|
const RowSetCollection::Elem rowset,
|
|
const GHistIndexMatrix& gmat,
|
|
std::vector<RowSetCollection::Split>* p_row_split_tloc,
|
|
const Column& column,
|
|
bst_uint lower_bound,
|
|
bst_uint upper_bound,
|
|
bst_int split_cond,
|
|
bool default_left) {
|
|
std::vector<RowSetCollection::Split>& row_split_tloc = *p_row_split_tloc;
|
|
const size_t nrows = rowset.end - rowset.begin;
|
|
|
|
#pragma omp parallel num_threads(nthread_)
|
|
{
|
|
const auto tid = static_cast<size_t>(omp_get_thread_num());
|
|
const size_t ibegin = tid * nrows / nthread_;
|
|
const size_t iend = (tid + 1) * nrows / nthread_;
|
|
if (ibegin < iend) { // ensure that [ibegin, iend) is nonempty range
|
|
// search first nonzero row with index >= rowset[ibegin]
|
|
const size_t* p = std::lower_bound(column.GetRowData(),
|
|
column.GetRowData() + column.Size(),
|
|
rowset.begin[ibegin]);
|
|
|
|
auto& left = row_split_tloc[tid].left;
|
|
auto& right = row_split_tloc[tid].right;
|
|
if (p != column.GetRowData() + column.Size() && *p <= rowset.begin[iend - 1]) {
|
|
size_t cursor = p - column.GetRowData();
|
|
|
|
for (size_t i = ibegin; i < iend; ++i) {
|
|
const size_t rid = rowset.begin[i];
|
|
while (cursor < column.Size()
|
|
&& column.GetRowIdx(cursor) < rid
|
|
&& column.GetRowIdx(cursor) <= rowset.begin[iend - 1]) {
|
|
++cursor;
|
|
}
|
|
if (cursor < column.Size() && column.GetRowIdx(cursor) == rid) {
|
|
const uint32_t rbin = column.GetFeatureBinIdx(cursor);
|
|
if (static_cast<int32_t>(rbin + column.GetBaseIdx()) <= split_cond) {
|
|
left.push_back(rid);
|
|
} else {
|
|
right.push_back(rid);
|
|
}
|
|
++cursor;
|
|
} else {
|
|
// missing value
|
|
if (default_left) {
|
|
left.push_back(rid);
|
|
} else {
|
|
right.push_back(rid);
|
|
}
|
|
}
|
|
}
|
|
} else { // all rows in [ibegin, iend) have missing values
|
|
if (default_left) {
|
|
for (size_t i = ibegin; i < iend; ++i) {
|
|
const size_t rid = rowset.begin[i];
|
|
left.push_back(rid);
|
|
}
|
|
} else {
|
|
for (size_t i = ibegin; i < iend; ++i) {
|
|
const size_t rid = rowset.begin[i];
|
|
right.push_back(rid);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
void QuantileHistMaker::Builder::InitNewNode(int nid,
|
|
const GHistIndexMatrix& gmat,
|
|
const std::vector<GradientPair>& gpair,
|
|
const DMatrix& fmat,
|
|
const RegTree& tree) {
|
|
builder_monitor_.Start("InitNewNode");
|
|
{
|
|
snode_.resize(tree.param.num_nodes, NodeEntry(param_));
|
|
}
|
|
|
|
{
|
|
auto& stats = snode_[nid].stats;
|
|
GHistRow hist = hist_[nid];
|
|
if (tree[nid].IsRoot()) {
|
|
if (data_layout_ == kDenseDataZeroBased || data_layout_ == kDenseDataOneBased) {
|
|
const std::vector<uint32_t>& row_ptr = gmat.cut.row_ptr;
|
|
const uint32_t ibegin = row_ptr[fid_least_bins_];
|
|
const uint32_t iend = row_ptr[fid_least_bins_ + 1];
|
|
auto begin = hist.data();
|
|
for (uint32_t i = ibegin; i < iend; ++i) {
|
|
const GradStats et = begin[i];
|
|
stats.Add(et.sum_grad, et.sum_hess);
|
|
}
|
|
} else {
|
|
const RowSetCollection::Elem e = row_set_collection_[nid];
|
|
for (const size_t* it = e.begin; it < e.end; ++it) {
|
|
stats.Add(gpair[*it]);
|
|
}
|
|
}
|
|
histred_.Allreduce(&snode_[nid].stats, 1);
|
|
} else {
|
|
int parent_id = tree[nid].Parent();
|
|
if (tree[nid].IsLeftChild()) {
|
|
snode_[nid].stats = snode_[parent_id].best.left_sum;
|
|
} else {
|
|
snode_[nid].stats = snode_[parent_id].best.right_sum;
|
|
}
|
|
}
|
|
}
|
|
|
|
// calculating the weights
|
|
{
|
|
bst_uint parentid = tree[nid].Parent();
|
|
snode_[nid].weight = static_cast<float>(
|
|
spliteval_->ComputeWeight(parentid, snode_[nid].stats));
|
|
snode_[nid].root_gain = static_cast<float>(
|
|
spliteval_->ComputeScore(parentid, snode_[nid].stats, snode_[nid].weight));
|
|
}
|
|
builder_monitor_.Stop("InitNewNode");
|
|
}
|
|
|
|
// enumerate the split values of specific feature
|
|
void QuantileHistMaker::Builder::EnumerateSplit(int d_step,
|
|
const GHistIndexMatrix& gmat,
|
|
const GHistRow& hist,
|
|
const NodeEntry& snode,
|
|
const MetaInfo& info,
|
|
SplitEntry* p_best,
|
|
bst_uint fid,
|
|
bst_uint nodeID) {
|
|
CHECK(d_step == +1 || d_step == -1);
|
|
|
|
// aliases
|
|
const std::vector<uint32_t>& cut_ptr = gmat.cut.row_ptr;
|
|
const std::vector<bst_float>& cut_val = gmat.cut.cut;
|
|
|
|
// statistics on both sides of split
|
|
GradStats c;
|
|
GradStats e;
|
|
// best split so far
|
|
SplitEntry best;
|
|
|
|
// bin boundaries
|
|
CHECK_LE(cut_ptr[fid],
|
|
static_cast<uint32_t>(std::numeric_limits<int32_t>::max()));
|
|
CHECK_LE(cut_ptr[fid + 1],
|
|
static_cast<uint32_t>(std::numeric_limits<int32_t>::max()));
|
|
// imin: index (offset) of the minimum value for feature fid
|
|
// need this for backward enumeration
|
|
const auto imin = static_cast<int32_t>(cut_ptr[fid]);
|
|
// ibegin, iend: smallest/largest cut points for feature fid
|
|
// use int to allow for value -1
|
|
int32_t ibegin, iend;
|
|
if (d_step > 0) {
|
|
ibegin = static_cast<int32_t>(cut_ptr[fid]);
|
|
iend = static_cast<int32_t>(cut_ptr[fid + 1]);
|
|
} else {
|
|
ibegin = static_cast<int32_t>(cut_ptr[fid + 1]) - 1;
|
|
iend = static_cast<int32_t>(cut_ptr[fid]) - 1;
|
|
}
|
|
|
|
for (int32_t i = ibegin; i != iend; i += d_step) {
|
|
// start working
|
|
// try to find a split
|
|
e.Add(hist[i].GetGrad(), hist[i].GetHess());
|
|
if (e.sum_hess >= param_.min_child_weight) {
|
|
c.SetSubstract(snode.stats, e);
|
|
if (c.sum_hess >= param_.min_child_weight) {
|
|
bst_float loss_chg;
|
|
bst_float split_pt;
|
|
if (d_step > 0) {
|
|
// forward enumeration: split at right bound of each bin
|
|
loss_chg = static_cast<bst_float>(
|
|
spliteval_->ComputeSplitScore(nodeID, fid, e, c) -
|
|
snode.root_gain);
|
|
split_pt = cut_val[i];
|
|
best.Update(loss_chg, fid, split_pt, d_step == -1, e, c);
|
|
} else {
|
|
// backward enumeration: split at left bound of each bin
|
|
loss_chg = static_cast<bst_float>(
|
|
spliteval_->ComputeSplitScore(nodeID, fid, c, e) -
|
|
snode.root_gain);
|
|
if (i == imin) {
|
|
// for leftmost bin, left bound is the smallest feature value
|
|
split_pt = gmat.cut.min_val[fid];
|
|
} else {
|
|
split_pt = cut_val[i - 1];
|
|
}
|
|
best.Update(loss_chg, fid, split_pt, d_step == -1, c, e);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
p_best->Update(best);
|
|
}
|
|
|
|
XGBOOST_REGISTER_TREE_UPDATER(FastHistMaker, "grow_fast_histmaker")
|
|
.describe("(Deprecated, use grow_quantile_histmaker instead.)"
|
|
" Grow tree using quantized histogram.")
|
|
.set_body(
|
|
[]() {
|
|
LOG(WARNING) << "grow_fast_histmaker is deprecated, "
|
|
<< "use grow_quantile_histmaker instead.";
|
|
return new QuantileHistMaker();
|
|
});
|
|
|
|
XGBOOST_REGISTER_TREE_UPDATER(QuantileHistMaker, "grow_quantile_histmaker")
|
|
.describe("Grow tree using quantized histogram.")
|
|
.set_body(
|
|
[]() {
|
|
return new QuantileHistMaker();
|
|
});
|
|
|
|
} // namespace tree
|
|
} // namespace xgboost
|