xgboost/src/tree/updater_colmaker-inl.hpp
tqchen 414e7f27ff Merge branch 'master' into unity
Conflicts:
	src/learner/evaluation-inl.hpp
	wrapper/xgboost_R.cpp
	wrapper/xgboost_wrapper.cpp
	wrapper/xgboost_wrapper.h
2014-08-26 20:32:07 -07:00

387 lines
15 KiB
C++

#ifndef XGBOOST_TREE_UPDATER_COLMAKER_INL_HPP_
#define XGBOOST_TREE_UPDATER_COLMAKER_INL_HPP_
/*!
* \file updater_colmaker-inl.hpp
* \brief use columnwise update to construct a tree
* \author Tianqi Chen
*/
#include <vector>
#include <algorithm>
#include "./param.h"
#include "./updater.h"
#include "../utils/omp.h"
#include "../utils/random.h"
namespace xgboost {
namespace tree {
/*! \brief pruner that prunes a tree after growing finishs */
template<typename FMatrix, typename TStats>
class ColMaker: public IUpdater<FMatrix> {
public:
virtual ~ColMaker(void) {}
// set training parameter
virtual void SetParam(const char *name, const char *val) {
param.SetParam(name, val);
}
virtual void Update(const std::vector<bst_gpair> &gpair,
const FMatrix &fmat,
const BoosterInfo &info,
const std::vector<RegTree*> &trees) {
TStats::CheckInfo(info);
// rescale learning rate according to size of trees
float lr = param.learning_rate;
param.learning_rate = lr / trees.size();
// build tree
for (size_t i = 0; i < trees.size(); ++i) {
Builder builder(param);
builder.Update(gpair, fmat, info, trees[i]);
}
param.learning_rate = lr;
}
private:
// training parameter
TrainParam param;
// data structure
/*! \brief per thread x per node entry to store tmp data */
struct ThreadEntry {
/*! \brief statistics of data*/
TStats stats;
/*! \brief last feature value scanned */
float last_fvalue;
/*! \brief current best solution */
SplitEntry best;
// constructor
explicit ThreadEntry(const TrainParam &param)
: stats(param) {
}
};
struct NodeEntry {
/*! \brief statics for node entry */
TStats stats;
/*! \brief loss of this node, without split */
bst_float root_gain;
/*! \brief weight calculated related to current data */
float weight;
/*! \brief current best solution */
SplitEntry best;
// constructor
explicit NodeEntry(const TrainParam &param)
: stats(param), root_gain(0.0f), weight(0.0f){
}
};
// actual builder that runs the algorithm
struct Builder{
public:
// constructor
explicit Builder(const TrainParam &param) : param(param) {}
// update one tree, growing
virtual void Update(const std::vector<bst_gpair> &gpair,
const FMatrix &fmat,
const BoosterInfo &info,
RegTree *p_tree) {
this->InitData(gpair, fmat, info.root_index, *p_tree);
this->InitNewNode(qexpand, gpair, fmat, info, *p_tree);
for (int depth = 0; depth < param.max_depth; ++depth) {
this->FindSplit(depth, this->qexpand, gpair, fmat, info, p_tree);
this->ResetPosition(this->qexpand, fmat, *p_tree);
this->UpdateQueueExpand(*p_tree, &this->qexpand);
this->InitNewNode(qexpand, gpair, fmat, info, *p_tree);
// if nothing left to be expand, break
if (qexpand.size() == 0) break;
}
// set all the rest expanding nodes to leaf
for (size_t i = 0; i < qexpand.size(); ++i) {
const int nid = qexpand[i];
(*p_tree)[nid].set_leaf(snode[nid].weight * param.learning_rate);
}
// remember auxiliary statistics in the tree node
for (int nid = 0; nid < p_tree->param.num_nodes; ++nid) {
p_tree->stat(nid).loss_chg = snode[nid].best.loss_chg;
p_tree->stat(nid).base_weight = snode[nid].weight;
p_tree->stat(nid).sum_hess = static_cast<float>(snode[nid].stats.sum_hess);
snode[nid].stats.SetLeafVec(param, p_tree->leafvec(nid));
}
}
private:
// initialize temp data structure
inline void InitData(const std::vector<bst_gpair> &gpair,
const FMatrix &fmat,
const std::vector<unsigned> &root_index, const RegTree &tree) {
utils::Assert(tree.param.num_nodes == tree.param.num_roots, "ColMaker: can only grow new tree");
const std::vector<bst_uint> &rowset = fmat.buffered_rowset();
{// setup position
position.resize(gpair.size());
if (root_index.size() == 0) {
for (size_t i = 0; i < rowset.size(); ++i) {
position[rowset[i]] = 0;
}
} else {
for (size_t i = 0; i < rowset.size(); ++i) {
const bst_uint ridx = rowset[i];
position[ridx] = root_index[ridx];
utils::Assert(root_index[ridx] < (unsigned)tree.param.num_roots, "root index exceed setting");
}
}
// mark delete for the deleted datas
for (size_t i = 0; i < rowset.size(); ++i) {
const bst_uint ridx = rowset[i];
if (gpair[ridx].hess < 0.0f) position[ridx] = -1;
}
// mark subsample
if (param.subsample < 1.0f) {
for (size_t i = 0; i < rowset.size(); ++i) {
const bst_uint ridx = rowset[i];
if (gpair[ridx].hess < 0.0f) continue;
if (random::SampleBinary(param.subsample) == 0) position[ridx] = -1;
}
}
}
{
// initialize feature index
unsigned ncol = static_cast<unsigned>(fmat.NumCol());
for (unsigned i = 0; i < ncol; ++i) {
if (fmat.GetColSize(i) != 0) {
feat_index.push_back(i);
}
}
unsigned n = static_cast<unsigned>(param.colsample_bytree * feat_index.size());
random::Shuffle(feat_index);
utils::Check(n > 0, "colsample_bytree is too small that no feature can be included");
feat_index.resize(n);
}
{// setup temp space for each thread
#pragma omp parallel
{
this->nthread = omp_get_num_threads();
}
// reserve a small space
stemp.clear();
stemp.resize(this->nthread, std::vector<ThreadEntry>());
for (size_t i = 0; i < stemp.size(); ++i) {
stemp[i].clear(); stemp[i].reserve(256);
}
snode.reserve(256);
}
{// expand query
qexpand.reserve(256); qexpand.clear();
for (int i = 0; i < tree.param.num_roots; ++i) {
qexpand.push_back(i);
}
}
}
/*! \brief initialize the base_weight, root_gain, and NodeEntry for all the new nodes in qexpand */
inline void InitNewNode(const std::vector<int> &qexpand,
const std::vector<bst_gpair> &gpair,
const FMatrix &fmat,
const BoosterInfo &info,
const RegTree &tree) {
{// setup statistics space for each tree node
for (size_t i = 0; i < stemp.size(); ++i) {
stemp[i].resize(tree.param.num_nodes, ThreadEntry(param));
}
snode.resize(tree.param.num_nodes, NodeEntry(param));
}
const std::vector<bst_uint> &rowset = fmat.buffered_rowset();
// setup position
const bst_omp_uint ndata = static_cast<bst_omp_uint>(rowset.size());
#pragma omp parallel for schedule(static)
for (bst_omp_uint i = 0; i < ndata; ++i) {
const bst_uint ridx = rowset[i];
const int tid = omp_get_thread_num();
if (position[ridx] < 0) continue;
stemp[tid][position[ridx]].stats.Add(gpair, info, ridx);
}
// sum the per thread statistics together
for (size_t j = 0; j < qexpand.size(); ++j) {
const int nid = qexpand[j];
TStats stats(param);
for (size_t tid = 0; tid < stemp.size(); ++tid) {
stats.Add(stemp[tid][nid].stats);
}
// update node statistics
snode[nid].stats = stats;
snode[nid].root_gain = static_cast<float>(stats.CalcGain(param));
snode[nid].weight = static_cast<float>(stats.CalcWeight(param));
}
}
/*! \brief update queue expand add in new leaves */
inline void UpdateQueueExpand(const RegTree &tree, std::vector<int> *p_qexpand) {
std::vector<int> &qexpand = *p_qexpand;
std::vector<int> newnodes;
for (size_t i = 0; i < qexpand.size(); ++i) {
const int nid = qexpand[i];
if (!tree[ nid ].is_leaf()) {
newnodes.push_back(tree[nid].cleft());
newnodes.push_back(tree[nid].cright());
}
}
// use new nodes for qexpand
qexpand = newnodes;
}
// enumerate the split values of specific feature
template<typename Iter>
inline void EnumerateSplit(Iter it, unsigned fid,
const std::vector<bst_gpair> &gpair,
const BoosterInfo &info,
std::vector<ThreadEntry> &temp,
bool is_forward_search) {
// clear all the temp statistics
for (size_t j = 0; j < qexpand.size(); ++j) {
temp[qexpand[j]].stats.Clear();
}
// left statistics
TStats c(param);
while (it.Next()) {
const bst_uint ridx = it.rindex();
const int nid = position[ridx];
if (nid < 0) continue;
// start working
const float fvalue = it.fvalue();
// get the statistics of nid
ThreadEntry &e = temp[nid];
// test if first hit, this is fine, because we set 0 during init
if (e.stats.Empty()) {
e.stats.Add(gpair, info, ridx);
e.last_fvalue = fvalue;
} else {
// try to find a split
if (fabsf(fvalue - e.last_fvalue) > rt_2eps && e.stats.sum_hess >= param.min_child_weight) {
c.SetSubstract(snode[nid].stats, e.stats);
if (c.sum_hess >= param.min_child_weight) {
bst_float loss_chg = static_cast<bst_float>(e.stats.CalcGain(param) + c.CalcGain(param) - snode[nid].root_gain);
e.best.Update(loss_chg, fid, (fvalue + e.last_fvalue) * 0.5f, !is_forward_search);
}
}
// update the statistics
e.stats.Add(gpair, info, ridx);
e.last_fvalue = fvalue;
}
}
// finish updating all statistics, check if it is possible to include all sum statistics
for (size_t i = 0; i < qexpand.size(); ++i) {
const int nid = qexpand[i];
ThreadEntry &e = temp[nid];
c.SetSubstract(snode[nid].stats, e.stats);
if (e.stats.sum_hess >= param.min_child_weight && c.sum_hess >= param.min_child_weight) {
bst_float loss_chg = static_cast<bst_float>(e.stats.CalcGain(param) + c.CalcGain(param) - snode[nid].root_gain);
const float delta = is_forward_search ? rt_eps : -rt_eps;
e.best.Update(loss_chg, fid, e.last_fvalue + delta, !is_forward_search);
}
}
}
// find splits at current level, do split per level
inline void FindSplit(int depth, const std::vector<int> &qexpand,
const std::vector<bst_gpair> &gpair,
const FMatrix &fmat,
const BoosterInfo &info,
RegTree *p_tree) {
std::vector<unsigned> feat_set = feat_index;
if (param.colsample_bylevel != 1.0f) {
random::Shuffle(feat_set);
unsigned n = static_cast<unsigned>(param.colsample_bylevel * feat_index.size());
utils::Check(n > 0, "colsample_bylevel is too small that no feature can be included");
feat_set.resize(n);
}
// start enumeration
const bst_omp_uint nsize = static_cast<bst_omp_uint>(feat_set.size());
#if defined(_OPENMP)
const int batch_size = std::max(static_cast<int>(nsize / this->nthread / 32), 1);
#endif
#pragma omp parallel for schedule(dynamic, batch_size)
for (bst_omp_uint i = 0; i < nsize; ++i) {
const unsigned fid = feat_set[i];
const int tid = omp_get_thread_num();
if (param.need_forward_search(fmat.GetColDensity(fid))) {
this->EnumerateSplit(fmat.GetSortedCol(fid), fid, gpair, info, stemp[tid], true);
}
if (param.need_backward_search(fmat.GetColDensity(fid))) {
this->EnumerateSplit(fmat.GetReverseSortedCol(fid), fid, gpair, info, stemp[tid], false);
}
}
// after this each thread's stemp will get the best candidates, aggregate results
for (size_t i = 0; i < qexpand.size(); ++i) {
const int nid = qexpand[i];
NodeEntry &e = snode[nid];
for (int tid = 0; tid < this->nthread; ++tid) {
e.best.Update(stemp[tid][nid].best);
}
// now we know the solution in snode[nid], set split
if (e.best.loss_chg > rt_eps) {
p_tree->AddChilds(nid);
(*p_tree)[nid].set_split(e.best.split_index(), e.best.split_value, e.best.default_left());
} else {
(*p_tree)[nid].set_leaf(e.weight * param.learning_rate);
}
}
}
// reset position of each data points after split is created in the tree
inline void ResetPosition(const std::vector<int> &qexpand, const FMatrix &fmat, const RegTree &tree) {
const std::vector<bst_uint> &rowset = fmat.buffered_rowset();
// step 1, set default direct nodes to default, and leaf nodes to -1
const bst_omp_uint ndata = static_cast<bst_omp_uint>(rowset.size());
#pragma omp parallel for schedule(static)
for (bst_omp_uint i = 0; i < ndata; ++i) {
const bst_uint ridx = rowset[i];
const int nid = position[ridx];
if (nid >= 0) {
if (tree[nid].is_leaf()) {
position[ridx] = -1;
} else {
// push to default branch, correct latter
position[ridx] = tree[nid].default_left() ? tree[nid].cleft(): tree[nid].cright();
}
}
}
// step 2, classify the non-default data into right places
std::vector<unsigned> fsplits;
for (size_t i = 0; i < qexpand.size(); ++i) {
const int nid = qexpand[i];
if (!tree[nid].is_leaf()) fsplits.push_back(tree[nid].split_index());
}
std::sort(fsplits.begin(), fsplits.end());
fsplits.resize(std::unique(fsplits.begin(), fsplits.end()) - fsplits.begin());
// start put things into right place
const bst_omp_uint nfeats = static_cast<bst_omp_uint>(fsplits.size());
#pragma omp parallel for schedule(dynamic, 1)
for (bst_omp_uint i = 0; i < nfeats; ++i) {
const unsigned fid = fsplits[i];
for (typename FMatrix::ColIter it = fmat.GetSortedCol(fid); it.Next();) {
const bst_uint ridx = it.rindex();
int nid = position[ridx];
if (nid == -1) continue;
// go back to parent, correct those who are not default
nid = tree[nid].parent();
if (tree[nid].split_index() == fid) {
if (it.fvalue() < tree[nid].split_cond()) {
position[ridx] = tree[nid].cleft();
} else {
position[ridx] = tree[nid].cright();
}
}
}
}
}
//--data fields--
const TrainParam &param;
// number of omp thread used during training
int nthread;
// Per feature: shuffle index of each feature index
std::vector<unsigned> feat_index;
// Instance Data: current node position in the tree of each instance
std::vector<int> position;
// PerThread x PerTreeNode: statistics for per thread construction
std::vector< std::vector<ThreadEntry> > stemp;
/*! \brief TreeNode Data: statistics for each constructed node */
std::vector<NodeEntry> snode;
/*! \brief queue of nodes to be expanded */
std::vector<int> qexpand;
};
};
} // namespace tree
} // namespace xgboost
#endif // XGBOOST_TREE_UPDATER_COLMAKER_INL_HPP_