xgboost/doc/tutorials/dart.rst
Philip Hyunsu Cho 3c72654e3b
Revert "Fix #3485, #3540: Don't use dropout for predicting test sets" (#3563)
* Revert "Fix #3485, #3540: Don't use dropout for predicting test sets (#3556)"

This reverts commit 44811f233071c5805d70c287abd22b155b732727.

* Document behavior of predict() for DART booster

* Add notice to parameter.rst
2018-08-08 09:48:55 -07:00

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DART booster
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XGBoost mostly combines a huge number of regression trees with a small learning rate.
In this situation, trees added early are significant and trees added late are unimportant.
Vinayak and Gilad-Bachrach proposed a new method to add dropout techniques from the deep neural net community to boosted trees, and reported better results in some situations.
This is a instruction of new tree booster ``dart``.
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Original paper
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Rashmi Korlakai Vinayak, Ran Gilad-Bachrach. "DART: Dropouts meet Multiple Additive Regression Trees." `JMLR <http://www.jmlr.org/proceedings/papers/v38/korlakaivinayak15.pdf>`_.
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Features
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- Drop trees in order to solve the over-fitting.
- Trivial trees (to correct trivial errors) may be prevented.
Because of the randomness introduced in the training, expect the following few differences:
- Training can be slower than ``gbtree`` because the random dropout prevents usage of the prediction buffer.
- The early stop might not be stable, due to the randomness.
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How it works
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- In :math:`m`-th training round, suppose :math:`k` trees are selected to be dropped.
- Let :math:`D = \sum_{i \in \mathbf{K}} F_i` be the leaf scores of dropped trees and :math:`F_m = \eta \tilde{F}_m` be the leaf scores of a new tree.
- The objective function is as follows:
.. math::
\mathrm{Obj}
= \sum_{j=1}^n L \left( y_j, \hat{y}_j^{m-1} - D_j + \tilde{F}_m \right)
+ \Omega \left( \tilde{F}_m \right).
- :math:`D` and :math:`F_m` are overshooting, so using scale factor
.. math::
\hat{y}_j^m = \sum_{i \not\in \mathbf{K}} F_i + a \left( \sum_{i \in \mathbf{K}} F_i + b F_m \right) .
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Parameters
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The booster ``dart`` inherits ``gbtree`` booster, so it supports all parameters that ``gbtree`` does, such as ``eta``, ``gamma``, ``max_depth`` etc.
Additional parameters are noted below:
* ``sample_type``: type of sampling algorithm.
- ``uniform``: (default) dropped trees are selected uniformly.
- ``weighted``: dropped trees are selected in proportion to weight.
* ``normalize_type``: type of normalization algorithm.
- ``tree``: (default) New trees have the same weight of each of dropped trees.
.. math::
a \left( \sum_{i \in \mathbf{K}} F_i + \frac{1}{k} F_m \right)
&= a \left( \sum_{i \in \mathbf{K}} F_i + \frac{\eta}{k} \tilde{F}_m \right) \\
&\sim a \left( 1 + \frac{\eta}{k} \right) D \\
&= a \frac{k + \eta}{k} D = D , \\
&\quad a = \frac{k}{k + \eta}
- ``forest``: New trees have the same weight of sum of dropped trees (forest).
.. math::
a \left( \sum_{i \in \mathbf{K}} F_i + F_m \right)
&= a \left( \sum_{i \in \mathbf{K}} F_i + \eta \tilde{F}_m \right) \\
&\sim a \left( 1 + \eta \right) D \\
&= a (1 + \eta) D = D , \\
&\quad a = \frac{1}{1 + \eta} .
* ``rate_drop``: dropout rate.
- range: [0.0, 1.0]
* ``skip_drop``: probability of skipping dropout.
- If a dropout is skipped, new trees are added in the same manner as gbtree.
- range: [0.0, 1.0]
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Sample Script
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.. code-block:: python
import xgboost as xgb
# read in data
dtrain = xgb.DMatrix('demo/data/agaricus.txt.train')
dtest = xgb.DMatrix('demo/data/agaricus.txt.test')
# specify parameters via map
param = {'booster': 'dart',
'max_depth': 5, 'learning_rate': 0.1,
'objective': 'binary:logistic', 'silent': True,
'sample_type': 'uniform',
'normalize_type': 'tree',
'rate_drop': 0.1,
'skip_drop': 0.5}
num_round = 50
bst = xgb.train(param, dtrain, num_round)
# make prediction
# ntree_limit must not be 0
preds = bst.predict(dtest, ntree_limit=num_round)
.. note:: Specify ``ntree_limit`` when predicting with test sets
By default, ``bst.predict()`` will perform dropouts on trees. To obtain
correct results on test sets, disable dropouts by specifying
a nonzero value for ``ntree_limit``.