336af4f974
* Work around a segfault observed in SparsePage::Push() * Revert "Work around a segfault observed in SparsePage::Push()" This reverts commit 30934844d00908750a5442082eb4769b1489f6a9. * Don't call vector::resize() inside OpenMP block * Set GITHUB_PAT env var to fix R tests * Use built-in GITHUB_TOKEN
139 lines
4.5 KiB
YAML
139 lines
4.5 KiB
YAML
name: XGBoost-R-Tests
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on: [push, pull_request]
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env:
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R_PACKAGES: c('XML', 'igraph', 'data.table', 'ggplot2', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'testthat', 'lintr', 'knitr', 'rmarkdown', 'e1071', 'cplm', 'devtools', 'float', 'titanic')
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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jobs:
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lintr:
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runs-on: ${{ matrix.config.os }}
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name: Run R linters on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }}
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strategy:
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matrix:
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config:
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- {os: windows-latest, r: 'release', compiler: 'mingw', build: 'autotools'}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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steps:
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- uses: actions/checkout@v2
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with:
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submodules: 'true'
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- uses: r-lib/actions/setup-r@master
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with:
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r-version: ${{ matrix.config.r }}
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- name: Cache R packages
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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- name: Install dependencies
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shell: Rscript {0}
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run: |
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install.packages(${{ env.R_PACKAGES }},
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repos = 'http://cloud.r-project.org',
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dependencies = c('Depends', 'Imports', 'LinkingTo'))
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- name: Run lintr
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run: |
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cd R-package
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R.exe CMD INSTALL .
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Rscript.exe tests/helper_scripts/run_lint.R
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test-with-R:
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runs-on: ${{ matrix.config.os }}
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name: Test R on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }}
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: windows-2016, r: 'release', compiler: 'mingw', build: 'autotools'}
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- {os: windows-2016, r: 'release', compiler: 'msvc', build: 'cmake'}
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- {os: windows-2016, r: 'release', compiler: 'mingw', build: 'cmake'}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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steps:
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- uses: actions/checkout@v2
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with:
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submodules: 'true'
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- uses: r-lib/actions/setup-r@master
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with:
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r-version: ${{ matrix.config.r }}
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- name: Cache R packages
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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- name: Install dependencies
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shell: Rscript {0}
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run: |
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install.packages(${{ env.R_PACKAGES }},
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repos = 'http://cloud.r-project.org',
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dependencies = c('Depends', 'Imports', 'LinkingTo'))
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- uses: actions/setup-python@v2
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with:
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python-version: '3.7'
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architecture: 'x64'
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- name: Test R
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run: |
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python tests/ci_build/test_r_package.py --compiler="${{ matrix.config.compiler }}" --build-tool="${{ matrix.config.build }}"
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test-R-CRAN:
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runs-on: ubuntu-latest
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strategy:
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fail-fast: false
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matrix:
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config:
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- {r: 'release'}
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steps:
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- uses: actions/checkout@v2
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with:
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submodules: 'true'
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- uses: r-lib/actions/setup-r@master
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with:
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r-version: ${{ matrix.config.r }}
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- uses: r-lib/actions/setup-tinytex@master
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- name: Install system packages
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run: |
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sudo apt-get update && sudo apt-get install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev pandoc pandoc-citeproc
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- name: Cache R packages
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-2-${{ hashFiles('R-package/DESCRIPTION') }}
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- name: Install dependencies
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shell: Rscript {0}
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run: |
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install.packages(${{ env.R_PACKAGES }},
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repos = 'http://cloud.r-project.org',
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dependencies = c('Depends', 'Imports', 'LinkingTo'))
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- name: Check R Package
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run: |
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# Print stacktrace upon success of failure
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make Rcheck || tests/ci_build/print_r_stacktrace.sh fail
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tests/ci_build/print_r_stacktrace.sh success
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