45 lines
1.6 KiB
Docker
45 lines
1.6 KiB
Docker
FROM ubuntu:18.04
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ARG USE_R35=0
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# Environment
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ENV DEBIAN_FRONTEND noninteractive
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# Install all basic requirements
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RUN \
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apt-get update && \
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apt-get install -y software-properties-common tar unzip wget git build-essential doxygen graphviz libcurl4-openssl-dev libssl-dev libxml2-dev && \
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if [ $USE_R35 -eq 1 ]; then \
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apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
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add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && \
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apt-get update; \
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fi && \
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apt-get install -y r-base r-base-core r-recommended && \
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# CMake
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wget -nv -nc https://cmake.org/files/v3.12/cmake-3.12.0-Linux-x86_64.sh --no-check-certificate && \
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bash cmake-3.12.0-Linux-x86_64.sh --skip-license --prefix=/usr
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# Use 16 workers to compile R packages
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ENV MAKE 'make -j16'
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# Install R packages
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RUN Rscript -e "install.packages( \
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c('devtools', 'testthat', 'lintr', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'data.table', 'stringi'), \
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repos = 'http://cloud.r-project.org', \
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dependencies = c('Depends', 'Imports', 'LinkingTo') \
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)"
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ENV GOSU_VERSION 1.10
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# Install lightweight sudo (not bound to TTY)
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RUN set -ex; \
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wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-amd64" && \
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chmod +x /usr/local/bin/gosu && \
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gosu nobody true
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# Default entry-point to use if running locally
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# It will preserve attributes of created files
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COPY entrypoint.sh /scripts/
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WORKDIR /workspace
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ENTRYPOINT ["/scripts/entrypoint.sh"]
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