c75a3bc0a9
- Add `numBoostedRound` to jvm packages - Remove rabit checkpoint version. - Change the starting version of training continuation in JVM [breaking]. - Redefine the checkpoint version policy in jvm package. [breaking] - Rename the Python check point callback parameter. [breaking] - Unifies the checkpoint policy between Python and JVM.
607 lines
19 KiB
Python
607 lines
19 KiB
Python
"""Callback library containing training routines. See :doc:`Callback Functions
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</python/callbacks>` for a quick introduction.
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"""
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import collections
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import os
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import pickle
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from abc import ABC
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from typing import (
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Any,
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Callable,
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Dict,
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List,
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Optional,
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Sequence,
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Tuple,
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TypeVar,
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Union,
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cast,
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)
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import numpy
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from . import collective
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from .core import Booster, DMatrix, XGBoostError, _parse_eval_str
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__all__ = [
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"TrainingCallback",
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"LearningRateScheduler",
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"EarlyStopping",
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"EvaluationMonitor",
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"TrainingCheckPoint",
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"CallbackContainer",
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]
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_Score = Union[float, Tuple[float, float]]
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_ScoreList = Union[List[float], List[Tuple[float, float]]]
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_Model = Any # real type is Union[Booster, CVPack]; need more work
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# pylint: disable=unused-argument
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class TrainingCallback(ABC):
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"""Interface for training callback.
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.. versionadded:: 1.3.0
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"""
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EvalsLog = Dict[str, Dict[str, _ScoreList]] # pylint: disable=invalid-name
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def __init__(self) -> None:
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pass
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def before_training(self, model: _Model) -> _Model:
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"""Run before training starts."""
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return model
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def after_training(self, model: _Model) -> _Model:
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"""Run after training is finished."""
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return model
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def before_iteration(self, model: _Model, epoch: int, evals_log: EvalsLog) -> bool:
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"""Run before each iteration. Return True when training should stop."""
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return False
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def after_iteration(self, model: _Model, epoch: int, evals_log: EvalsLog) -> bool:
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"""Run after each iteration. Return True when training should stop."""
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return False
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def _aggcv(rlist: List[str]) -> List[Tuple[str, float, float]]:
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# pylint: disable=invalid-name, too-many-locals
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"""Aggregate cross-validation results."""
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cvmap: Dict[Tuple[int, str], List[float]] = {}
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idx = rlist[0].split()[0]
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for line in rlist:
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arr: List[str] = line.split()
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assert idx == arr[0]
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for metric_idx, it in enumerate(arr[1:]):
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if not isinstance(it, str):
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it = it.decode()
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k, v = it.split(":")
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if (metric_idx, k) not in cvmap:
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cvmap[(metric_idx, k)] = []
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cvmap[(metric_idx, k)].append(float(v))
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msg = idx
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results = []
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for (_, name), s in sorted(cvmap.items(), key=lambda x: x[0][0]):
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as_arr = numpy.array(s)
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if not isinstance(msg, str):
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msg = msg.decode()
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mean, std = numpy.mean(as_arr), numpy.std(as_arr)
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results.extend([(name, mean, std)])
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return results
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# allreduce type
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_ART = TypeVar("_ART")
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def _allreduce_metric(score: _ART) -> _ART:
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"""Helper function for computing customized metric in distributed
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environment. Not strictly correct as many functions don't use mean value
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as final result.
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"""
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world = collective.get_world_size()
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assert world != 0
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if world == 1:
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return score
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if isinstance(score, tuple): # has mean and stdv
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raise ValueError(
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"xgboost.cv function should not be used in distributed environment."
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)
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arr = numpy.array([score])
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arr = collective.allreduce(arr, collective.Op.SUM) / world
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return arr[0]
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class CallbackContainer:
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"""A special internal callback for invoking a list of other callbacks.
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.. versionadded:: 1.3.0
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"""
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def __init__(
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self,
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callbacks: Sequence[TrainingCallback],
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metric: Optional[Callable] = None,
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output_margin: bool = True,
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is_cv: bool = False,
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) -> None:
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self.callbacks = set(callbacks)
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for cb in callbacks:
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if not isinstance(cb, TrainingCallback):
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raise TypeError("callback must be an instance of `TrainingCallback`.")
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msg = (
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"metric must be callable object for monitoring. For builtin metrics"
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", passing them in training parameter invokes monitor automatically."
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)
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if metric is not None and not callable(metric):
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raise TypeError(msg)
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self.metric = metric
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self.history: TrainingCallback.EvalsLog = collections.OrderedDict()
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self._output_margin = output_margin
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self.is_cv = is_cv
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if self.is_cv:
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self.aggregated_cv = None
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def before_training(self, model: _Model) -> _Model:
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"""Function called before training."""
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for c in self.callbacks:
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model = c.before_training(model=model)
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msg = "before_training should return the model"
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if self.is_cv:
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assert isinstance(model.cvfolds, list), msg
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else:
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assert isinstance(model, Booster), msg
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return model
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def after_training(self, model: _Model) -> _Model:
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"""Function called after training."""
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for c in self.callbacks:
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model = c.after_training(model=model)
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msg = "after_training should return the model"
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if self.is_cv:
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assert isinstance(model.cvfolds, list), msg
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else:
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assert isinstance(model, Booster), msg
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return model
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def before_iteration(
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self,
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model: _Model,
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epoch: int,
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dtrain: DMatrix,
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evals: Optional[List[Tuple[DMatrix, str]]],
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) -> bool:
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"""Function called before training iteration."""
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return any(
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c.before_iteration(model, epoch, self.history) for c in self.callbacks
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)
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def _update_history(
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self,
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score: Union[List[Tuple[str, float]], List[Tuple[str, float, float]]],
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epoch: int,
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) -> None:
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for d in score:
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name: str = d[0]
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s: float = d[1]
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if self.is_cv:
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std = float(cast(Tuple[str, float, float], d)[2])
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x: _Score = (s, std)
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else:
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x = s
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splited_names = name.split("-")
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data_name = splited_names[0]
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metric_name = "-".join(splited_names[1:])
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x = _allreduce_metric(x)
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if data_name not in self.history:
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self.history[data_name] = collections.OrderedDict()
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data_history = self.history[data_name]
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if metric_name not in data_history:
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data_history[metric_name] = cast(_ScoreList, [])
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metric_history = data_history[metric_name]
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if self.is_cv:
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cast(List[Tuple[float, float]], metric_history).append(
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cast(Tuple[float, float], x)
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)
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else:
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cast(List[float], metric_history).append(cast(float, x))
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def after_iteration(
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self,
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model: _Model,
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epoch: int,
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dtrain: DMatrix,
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evals: Optional[List[Tuple[DMatrix, str]]],
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) -> bool:
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"""Function called after training iteration."""
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if self.is_cv:
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scores = model.eval(epoch, self.metric, self._output_margin)
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scores = _aggcv(scores)
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self.aggregated_cv = scores
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self._update_history(scores, epoch)
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else:
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evals = [] if evals is None else evals
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for _, name in evals:
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assert name.find("-") == -1, "Dataset name should not contain `-`"
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score: str = model.eval_set(evals, epoch, self.metric, self._output_margin)
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metric_score = _parse_eval_str(score)
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self._update_history(metric_score, epoch)
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ret = any(c.after_iteration(model, epoch, self.history) for c in self.callbacks)
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return ret
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class LearningRateScheduler(TrainingCallback):
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"""Callback function for scheduling learning rate.
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.. versionadded:: 1.3.0
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Parameters
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----------
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learning_rates :
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If it's a callable object, then it should accept an integer parameter
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`epoch` and returns the corresponding learning rate. Otherwise it
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should be a sequence like list or tuple with the same size of boosting
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rounds.
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"""
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def __init__(
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self, learning_rates: Union[Callable[[int], float], Sequence[float]]
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) -> None:
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if not callable(learning_rates) and not isinstance(
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learning_rates, collections.abc.Sequence
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):
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raise TypeError(
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"Invalid learning rates, expecting callable or sequence, got: "
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f"{type(learning_rates)}"
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)
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if callable(learning_rates):
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self.learning_rates = learning_rates
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else:
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self.learning_rates = lambda epoch: cast(Sequence, learning_rates)[epoch]
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super().__init__()
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def after_iteration(
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self, model: _Model, epoch: int, evals_log: TrainingCallback.EvalsLog
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) -> bool:
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model.set_param("learning_rate", self.learning_rates(epoch))
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return False
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# pylint: disable=too-many-instance-attributes
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class EarlyStopping(TrainingCallback):
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"""Callback function for early stopping
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.. versionadded:: 1.3.0
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Parameters
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----------
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rounds :
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Early stopping rounds.
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metric_name :
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Name of metric that is used for early stopping.
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data_name :
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Name of dataset that is used for early stopping.
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maximize :
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Whether to maximize evaluation metric. None means auto (discouraged).
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save_best :
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Whether training should return the best model or the last model.
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min_delta :
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.. versionadded:: 1.5.0
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Minimum absolute change in score to be qualified as an improvement.
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Examples
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--------
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.. code-block:: python
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es = xgboost.callback.EarlyStopping(
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rounds=2,
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min_delta=1e-3,
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save_best=True,
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maximize=False,
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data_name="validation_0",
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metric_name="mlogloss",
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)
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clf = xgboost.XGBClassifier(tree_method="hist", device="cuda", callbacks=[es])
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X, y = load_digits(return_X_y=True)
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clf.fit(X, y, eval_set=[(X, y)])
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"""
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# pylint: disable=too-many-arguments
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def __init__(
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self,
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rounds: int,
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metric_name: Optional[str] = None,
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data_name: Optional[str] = None,
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maximize: Optional[bool] = None,
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save_best: Optional[bool] = False,
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min_delta: float = 0.0,
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) -> None:
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self.data = data_name
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self.metric_name = metric_name
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self.rounds = rounds
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self.save_best = save_best
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self.maximize = maximize
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self.stopping_history: TrainingCallback.EvalsLog = {}
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self._min_delta = min_delta
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if self._min_delta < 0:
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raise ValueError("min_delta must be greater or equal to 0.")
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self.current_rounds: int = 0
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self.best_scores: dict = {}
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self.starting_round: int = 0
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super().__init__()
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def before_training(self, model: _Model) -> _Model:
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self.starting_round = model.num_boosted_rounds()
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return model
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def _update_rounds(
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self, score: _Score, name: str, metric: str, model: _Model, epoch: int
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) -> bool:
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def get_s(value: _Score) -> float:
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"""get score if it's cross validation history."""
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return value[0] if isinstance(value, tuple) else value
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def maximize(new: _Score, best: _Score) -> bool:
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"""New score should be greater than the old one."""
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return numpy.greater(get_s(new) - self._min_delta, get_s(best))
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def minimize(new: _Score, best: _Score) -> bool:
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"""New score should be lesser than the old one."""
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return numpy.greater(get_s(best) - self._min_delta, get_s(new))
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if self.maximize is None:
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# Just to be compatibility with old behavior before 1.3. We should let
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# user to decide.
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maximize_metrics = (
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"auc",
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"aucpr",
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"pre",
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"pre@",
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"map",
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"ndcg",
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"auc@",
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"aucpr@",
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"map@",
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"ndcg@",
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)
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if metric != "mape" and any(metric.startswith(x) for x in maximize_metrics):
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self.maximize = True
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else:
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self.maximize = False
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if self.maximize:
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improve_op = maximize
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else:
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improve_op = minimize
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if not self.stopping_history: # First round
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self.current_rounds = 0
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self.stopping_history[name] = {}
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self.stopping_history[name][metric] = cast(_ScoreList, [score])
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self.best_scores[name] = {}
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self.best_scores[name][metric] = [score]
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model.set_attr(best_score=str(score), best_iteration=str(epoch))
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elif not improve_op(score, self.best_scores[name][metric][-1]):
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# Not improved
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self.stopping_history[name][metric].append(score) # type: ignore
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self.current_rounds += 1
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else: # Improved
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self.stopping_history[name][metric].append(score) # type: ignore
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self.best_scores[name][metric].append(score)
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record = self.stopping_history[name][metric][-1]
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model.set_attr(best_score=str(record), best_iteration=str(epoch))
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self.current_rounds = 0 # reset
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if self.current_rounds >= self.rounds:
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# Should stop
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return True
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return False
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def after_iteration(
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self, model: _Model, epoch: int, evals_log: TrainingCallback.EvalsLog
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) -> bool:
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epoch += self.starting_round # training continuation
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msg = "Must have at least 1 validation dataset for early stopping."
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if len(evals_log.keys()) < 1:
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raise ValueError(msg)
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# Get data name
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if self.data:
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data_name = self.data
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else:
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# Use the last one as default.
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data_name = list(evals_log.keys())[-1]
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if data_name not in evals_log:
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raise ValueError(f"No dataset named: {data_name}")
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if not isinstance(data_name, str):
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raise TypeError(
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f"The name of the dataset should be a string. Got: {type(data_name)}"
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)
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data_log = evals_log[data_name]
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# Get metric name
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if self.metric_name:
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metric_name = self.metric_name
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else:
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# Use last metric by default.
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metric_name = list(data_log.keys())[-1]
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if metric_name not in data_log:
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raise ValueError(f"No metric named: {metric_name}")
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# The latest score
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score = data_log[metric_name][-1]
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return self._update_rounds(score, data_name, metric_name, model, epoch)
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def after_training(self, model: _Model) -> _Model:
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if not self.save_best:
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return model
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try:
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best_iteration = model.best_iteration
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best_score = model.best_score
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assert best_iteration is not None and best_score is not None
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model = model[: best_iteration + 1]
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model.best_iteration = best_iteration
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model.best_score = best_score
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except XGBoostError as e:
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raise XGBoostError(
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"`save_best` is not applicable to the current booster"
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) from e
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return model
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class EvaluationMonitor(TrainingCallback):
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"""Print the evaluation result at each iteration.
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.. versionadded:: 1.3.0
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Parameters
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----------
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rank :
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Which worker should be used for printing the result.
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period :
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How many epoches between printing.
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show_stdv :
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Used in cv to show standard deviation. Users should not specify it.
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"""
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def __init__(self, rank: int = 0, period: int = 1, show_stdv: bool = False) -> None:
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self.printer_rank = rank
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self.show_stdv = show_stdv
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self.period = period
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assert period > 0
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# last error message, useful when early stopping and period are used together.
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self._latest: Optional[str] = None
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super().__init__()
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def _fmt_metric(
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self, data: str, metric: str, score: float, std: Optional[float]
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) -> str:
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if std is not None and self.show_stdv:
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msg = f"\t{data + '-' + metric}:{score:.5f}+{std:.5f}"
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else:
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msg = f"\t{data + '-' + metric}:{score:.5f}"
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return msg
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def after_iteration(
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self, model: _Model, epoch: int, evals_log: TrainingCallback.EvalsLog
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) -> bool:
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if not evals_log:
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return False
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msg: str = f"[{epoch}]"
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if collective.get_rank() == self.printer_rank:
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for data, metric in evals_log.items():
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for metric_name, log in metric.items():
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stdv: Optional[float] = None
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if isinstance(log[-1], tuple):
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score = log[-1][0]
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stdv = log[-1][1]
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else:
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score = log[-1]
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msg += self._fmt_metric(data, metric_name, score, stdv)
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msg += "\n"
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if (epoch % self.period) == 0 or self.period == 1:
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collective.communicator_print(msg)
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self._latest = None
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else:
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# There is skipped message
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self._latest = msg
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return False
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def after_training(self, model: _Model) -> _Model:
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if collective.get_rank() == self.printer_rank and self._latest is not None:
|
|
collective.communicator_print(self._latest)
|
|
return model
|
|
|
|
|
|
class TrainingCheckPoint(TrainingCallback):
|
|
"""Checkpointing operation. Users are encouraged to create their own callbacks for
|
|
checkpoint as XGBoost doesn't handle distributed file systems. When checkpointing on
|
|
distributed systems, be sure to know the rank of the worker to avoid multiple
|
|
workers checkpointing to the same place.
|
|
|
|
.. versionadded:: 1.3.0
|
|
|
|
Parameters
|
|
----------
|
|
|
|
directory :
|
|
Output model directory.
|
|
name :
|
|
pattern of output model file. Models will be saved as name_0.json, name_1.json,
|
|
name_2.json ....
|
|
as_pickle :
|
|
When set to True, all training parameters will be saved in pickle format,
|
|
instead of saving only the model.
|
|
interval :
|
|
Interval of checkpointing. Checkpointing is slow so setting a larger number can
|
|
reduce performance hit.
|
|
|
|
"""
|
|
|
|
def __init__(
|
|
self,
|
|
directory: Union[str, os.PathLike],
|
|
name: str = "model",
|
|
as_pickle: bool = False,
|
|
interval: int = 100,
|
|
) -> None:
|
|
self._path = os.fspath(directory)
|
|
self._name = name
|
|
self._as_pickle = as_pickle
|
|
self._iterations = interval
|
|
self._epoch = 0 # counter for iterval
|
|
self._start = 0 # beginning iteration
|
|
super().__init__()
|
|
|
|
def before_training(self, model: _Model) -> _Model:
|
|
self._start = model.num_boosted_rounds()
|
|
return model
|
|
|
|
def after_iteration(
|
|
self, model: _Model, epoch: int, evals_log: TrainingCallback.EvalsLog
|
|
) -> bool:
|
|
if self._epoch == self._iterations:
|
|
path = os.path.join(
|
|
self._path,
|
|
self._name
|
|
+ "_"
|
|
+ (str(epoch + self._start))
|
|
+ (".pkl" if self._as_pickle else ".json"),
|
|
)
|
|
self._epoch = 0 # reset counter
|
|
if collective.get_rank() == 0:
|
|
# checkpoint using the first worker
|
|
if self._as_pickle:
|
|
with open(path, "wb") as fd:
|
|
pickle.dump(model, fd)
|
|
else:
|
|
model.save_model(path)
|
|
self._epoch += 1
|
|
return False
|