FROM ubuntu:18.04
ARG USE_R35=0

# Environment
ENV DEBIAN_FRONTEND noninteractive

# Install all basic requirements
RUN \
    apt-get update && \
    apt-get install -y software-properties-common tar unzip wget git build-essential doxygen graphviz libcurl4-openssl-dev libssl-dev libxml2-dev && \
    if [ $USE_R35 -eq 1 ]; then \
      apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
      add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' && \
      apt-get update; \
    fi && \
    apt-get install -y r-base r-base-core r-recommended && \
    # CMake
    wget -nv -nc https://cmake.org/files/v3.13/cmake-3.13.0-Linux-x86_64.sh --no-check-certificate && \
    bash cmake-3.13.0-Linux-x86_64.sh --skip-license --prefix=/usr

# Use 16 workers to compile R packages
ENV MAKE 'make -j16'

# Install R packages
RUN Rscript -e "install.packages( \
        c('devtools', 'testthat', 'lintr', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'data.table', 'stringi'), \
        repos = 'http://cloud.r-project.org', \
        dependencies = c('Depends', 'Imports', 'LinkingTo') \
    )"

ENV GOSU_VERSION 1.10

# Install lightweight sudo (not bound to TTY)
RUN set -ex; \
    wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-amd64" && \
    chmod +x /usr/local/bin/gosu && \
    gosu nobody true

# Default entry-point to use if running locally
# It will preserve attributes of created files
COPY entrypoint.sh /scripts/

WORKDIR /workspace
ENTRYPOINT ["/scripts/entrypoint.sh"]